Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0013442

Physical Location & Seq

Genomic Coordinates Reverse (-)

47555918 .. 47557496

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGATTTGCGATGGTTTGGTGGCGCCAAATAAGTTCACATTTCCTTCTGTGTTGAAGGCCTGTTCTAGAATAGGGAATGCTCAGGCTGGCAGAAGTGTTCACGGGATGGTTGTGAAGTTTGGGTTGGATGATGATGAGTTTGTTGTGAGTAGTCTTGTGAGGATGTATGTAATGTGTGGGGTTATGGAGGATGCACATTCATTGTTTTCTAGGAGTGTAGCTGACTGTGGTGATTTGAATGAGAAGAAGCAAGAGGGTAATGTGGTTTTGTGGAATTTGATAGTTGATGGCAATGTGAGACTCGGGGAGTTTGGAGCTGCACGGGAGCTGTTCGACAAAATGCCTCAAAGAAGTGTTGTTTCGTGGAATGCGATGATATCCGCGTATGCGCAAAATGGGTTCTTTAGGGAAGCCGTAGAAATGTTCCGTGATATGCAGATTGGGGATGTATGCCCAAATTATGTGACTTTGGTTAGCGCCTTGCCTGCGATAGCACGACTTGGTGTGCTTGAATTGGGGAAATGGGTGCATTTGTATGCCGGGAAGCATAAGATTGGGATCGATGATGTGCTTGGTTCTGCTTTGGTTGATATGTATTCCAATGGGCTTGCTATGCATGGTAGAGGAAAGGATGCACTAGATTATTTTTCAAAGATGGAAAGAGCTGGTGTGGTGCCTAGTGATGTACATATATTGCAGGGCAGATCATTCTTCAACCACATGATTAATGTAGTTGGCTTAGAACCTAGAATCGAGCATTATGGGTGTATGGTCGATTTATTAGGCCGTGCTGGACTGTTAGAAGAAGCTGAAGAGCTTATACTAAATATGCCAATTCAGCCGGATGATGTTATATGGAAGGCATTGCTTGGTGCTTGCAAGGTTCGAGGGAATATTGAGATGGGAGAACGTGTCGCAAAGACTTTGATGGACTTGGCTCCCCATGATAGTGGATCATATGTTGCTCTATCGAACATGTATGCATCTTTGGGAAATTGGGAGGCAGTTTCAAATGTGAGATTGTTGATGAAGGATATGGACATTAGGAAAGACCCCGGTGGTAGTTGGATTGAGCTTGATGGAGTGCTTCATGAATTTCTGGTTGAAGATCAATCGCATACTAGAGCAGAAGAAATCCATTCAATGCTGGAAGAAATTTCCAACAAGTTAAGGTTAGAAGGATATAAGCCTAACACCACACAAGTATTGCTCAACGTGGCTGAAGAAGAAAAACAAAGTGCTTTACATTATCACAGTGAGAAAATTGCAGTTGCCTTTGGCTTAATCAGTACAGCCCCTCAATCGCCACTTCGAATTGTTAAGAACCTACGCATATGCGAGGATTGTCACTCCTCTATAAAGTTAATCTCAAAAATTTACAAACGAAAGATCATTGTTCGGGATCGTAAGCGCTTCCACCACTTTGAGCATGGGTTGTGCTCTTGCATGGACTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

486

Amino Acids

54.37

Weight (kDa)

5.99

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	118 - 157	1.9e-08	PPR repeat family
PPR	PF01535	120 - 146	4.7e-09	PPR repeat
E_motif	PF20431	298 - 358	5.9e-17	E motif
DYW_deaminase	PF14432	394 - 486	4.3e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48910
fragaria_vesca	FvH4_2g19560 FvH4_2g19570
malus_domestica	MD05G1179700.v1.1 MD10G1169300.v1.1
prunus_persica	Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1
pyrus_communis	pycom05g16620 pycom10g14610
rosa_chinensis	RchiOBHm_Chr6g0285331
rosa_laevigata	RLG00000012653
rosa_multiflora	Rmu_sc0011958.1_g000003
rosa_roxburghii	Rroxscaffold_7G00183350
rosa_rugosa	Rorug06G0173600
rosa_samantha	Rh6AG284300 Rh6BG285100 Rh6DG279600
rosa_wichuraiana	Rw6G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	390
AccB1I	GGYRCC	2 cut(s)	22, 673
AccII	CGCG	1 cut(s)	383
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	3 cut(s)	566, 961, 1410
AcsI	RAATTY	4 cut(s)	274, 1094, 1155, 1374
AcuI	CTGAAG	2 cut(s)	831, 1242
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	2 cut(s)	687, 1291
AfeI	AGCGCT	1 cut(s)	1412
AflIII	ACRYGT	2 cut(s)	910, 975
AgsI	TTSAA	8 cut(s)	55, 238, 512, 651, 715, 1011, 1106, 1143
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	7 cut(s)	221, 317, 328, 665, 809, 817, 1075
AluI	AGCT	7 cut(s)	221, 317, 328, 665, 809, 817, 1075
Alw21I	GWGCWC	1 cut(s)	1442
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	3 cut(s)	566, 961, 1410
Ama87I	CYCGRG	1 cut(s)	302
Aor51HI	AGCGCT	1 cut(s)	1412
AoxI	GGCC	2 cut(s)	57, 784
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	4 cut(s)	274, 1094, 1155, 1374
AseI	ATTAAT	1 cut(s)	726
AspLEI	GCGC	4 cut(s)	25, 391, 479, 1413
AsuC2I	CCSGG	2 cut(s)	541, 1056
AsuHPI	GGTGA	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	1312
AvaI	CYCGRG	1 cut(s)	302
BanI	GGYRCC	2 cut(s)	22, 673
BarI	GAAGNNNNNNTAC	2 cut(s)	804, 836
Bbv12I	GWGCWC	1 cut(s)	1442
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	7 cut(s)	5, 100, 281, 649, 895, 922, 1073
BceAI	ACGGC	2 cut(s)	398, 771
BcnI	CCSGG	2 cut(s)	541, 1056
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	6 cut(s)	66, 210, 638, 678, 747, 1122
BfoI	RGCGCY	3 cut(s)	26, 480, 1414
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	2 cut(s)	541, 1056
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	3 cut(s)	24, 675, 939
BmrFI	CCNGG	2 cut(s)	541, 1056
BmsI	GCATC	3 cut(s)	181, 622, 992
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	1312
BpuMI	CCSGG	2 cut(s)	541, 1056
Bsa29I	ATCGAT	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	1054
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bse1I	ACTGG	1 cut(s)	1460
Bse3DI	GCAATG	2 cut(s)	298, 863
Bse8I	GATNNNNATC	1 cut(s)	557
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	1054
BseGI	GGATG	7 cut(s)	111, 133, 168, 196, 451, 637, 850
BseJI	GATNNNNATC	1 cut(s)	557
BseMI	GCAATG	2 cut(s)	298, 863
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	1460
BseRI	GAGGAG	1 cut(s)	1342
BseXI	GCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	2 cut(s)	59, 786
BshNI	GGYRCC	2 cut(s)	22, 673
BshVI	ATCGAT	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	1442
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	540, 842, 1056
BsmAI	GTCTC	1 cut(s)	292
BsmI	GAATGC	2 cut(s)	82, 373
BsnI	GGCC	2 cut(s)	59, 786
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	1312
Bsp1286I	GDGCHC	1 cut(s)	1442
Bsp1407I	TGTACA	1 cut(s)	685
Bsp143I	GATC	6 cut(s)	558, 704, 953, 1108, 1389, 1402
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	59, 786
BspCNI	CTCAG	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	383
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	3 cut(s)	24, 675, 939
BspPI	GGATC	3 cut(s)	566, 961, 1410
BspQI	GCTCTTC	1 cut(s)	807
BspT104I	TTCGAA	1 cut(s)	1312
BspT107I	GGYRCC	2 cut(s)	22, 673
BsrDI	GCAATG	2 cut(s)	298, 863
BsrGI	TGTACA	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	1460
BssECI	CCNNGG	1 cut(s)	1054
BssMI	GATC	6 cut(s)	558, 704, 953, 1108, 1389, 1402
BssNI	GRCGYC	1 cut(s)	23
Bst4CI	ACNGT	3 cut(s)	227, 798, 1256
Bst6I	CTCTTC	1 cut(s)	807
BstACI	GRCGYC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	685
BstBI	TTCGAA	1 cut(s)	1312
BstC8I	GCNNGC	4 cut(s)	88, 486, 609, 877
BstDEI	CTNAG	2 cut(s)	81, 739
BstF5I	GGATG	7 cut(s)	111, 133, 168, 196, 451, 637, 850
BstFNI	CGCG	1 cut(s)	383
BstH2I	RGCGCY	3 cut(s)	26, 480, 1414
BstHHI	GCGC	4 cut(s)	25, 391, 479, 1413
BstKTI	GATC	6 cut(s)	561, 707, 956, 1111, 1392, 1405
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	6 cut(s)	558, 704, 953, 1108, 1389, 1402
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 613, 838
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	2 cut(s)	539, 1054
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	950
Bsu15I	ATCGAT	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	59, 786
BsuTUI	ATCGAT	1 cut(s)	561
BtgZI	GCGATG	2 cut(s)	24, 386
BtsCI	GGATG	7 cut(s)	111, 133, 168, 196, 451, 637, 850
BtsIMutI	CAGTG	1 cut(s)	1261
Cac8I	GCNNGC	4 cut(s)	88, 486, 609, 877
CciI	TCATGA	1 cut(s)	1090
CfoI	GCGC	4 cut(s)	25, 391, 479, 1413
ClaI	ATCGAT	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	686, 1290
CviAII	CATG	7 cut(s)	617, 721, 944, 976, 1091, 1430, 1447
CviQI	GTAC	2 cut(s)	686, 1290
DdeI	CTNAG	2 cut(s)	81, 739
DinI	GGCGCC	1 cut(s)	24
DpnI	GATC	6 cut(s)	560, 706, 955, 1110, 1391, 1404
DpnII	GATC	6 cut(s)	558, 704, 953, 1108, 1389, 1402
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco147I	AGGCCT	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	378
Eco47III	AGCGCT	1 cut(s)	1412
Eco57I	CTGAAG	2 cut(s)	831, 1242
Eco88I	CYCGRG	1 cut(s)	302
EcoRV	GATATC	1 cut(s)	378
EcoT22I	ATGCAT	2 cut(s)	618, 985
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
FaeI	CATG	7 cut(s)	620, 724, 947, 979, 1094, 1433, 1450
FatI	CATG	7 cut(s)	616, 720, 943, 975, 1090, 1429, 1446
FauNDI	CATATG	2 cut(s)	958, 1334
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	7 cut(s)	118, 140, 175, 203, 458, 644, 857
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	6 cut(s)	66, 210, 638, 678, 747, 1122
FspI	TGCGCA	1 cut(s)	390
GlaI	GCGC	4 cut(s)	24, 390, 478, 1412
GluI	GCNGC	1 cut(s)	318
HaeII	RGCGCY	3 cut(s)	26, 480, 1414
HaeIII	GGCC	2 cut(s)	59, 786
HapII	CCGG	3 cut(s)	540, 842, 1056
HhaI	GCGC	4 cut(s)	25, 391, 479, 1413
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	7 cut(s)	620, 724, 947, 979, 1094, 1433, 1450
Hin6I	GCGC	4 cut(s)	23, 389, 477, 1411
HinP1I	GCGC	4 cut(s)	23, 389, 477, 1411
HinfI	GANTC	2 cut(s)	300, 750
HpaII	CCGG	3 cut(s)	540, 842, 1056
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	36, 100
Hpy188III	TCNNGA	3 cut(s)	66, 1091, 1400
Hpy8I	GTNNAC	2 cut(s)	36, 100
HpyAV	CCTTC	5 cut(s)	49, 54, 853, 1024, 1172
HpyCH4III	ACNGT	3 cut(s)	227, 798, 1256
HpyCH4IV	ACGT	2 cut(s)	910, 1215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 613, 838
HpyF3I	CTNAG	2 cut(s)	81, 739
HpySE526I	ACGT	2 cut(s)	910, 1215
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	7 cut(s)	620, 724, 947, 979, 1094, 1433, 1450
HspAI	GCGC	4 cut(s)	23, 389, 477, 1411
KasI	GGCGCC	1 cut(s)	22
Kzo9I	GATC	6 cut(s)	558, 704, 953, 1108, 1389, 1402
LguI	GCTCTTC	1 cut(s)	807
LmnI	GCTCC	3 cut(s)	314, 325, 943
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	3 cut(s)	181, 622, 992
MaeI	CTAG	6 cut(s)	66, 210, 638, 678, 747, 1122
MaeII	ACGT	2 cut(s)	910, 1215
MaeIII	GTNAC	2 cut(s)	463, 1346
MalI	GATC	6 cut(s)	560, 706, 955, 1110, 1391, 1404
MboI	GATC	6 cut(s)	558, 704, 953, 1108, 1389, 1402
MboII	GAAGA	9 cut(s)	256, 703, 815, 824, 1118, 1142, 1163, 1235, 1238
MhlI	GDGCHC	1 cut(s)	1442
Mly113I	GGCGCC	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	3 cut(s)	105, 1046, 1185
Mph1103I	ATGCAT	2 cut(s)	618, 985
MseI	TTAA	5 cut(s)	726, 1169, 1283, 1320, 1364
MslI	CAYNNNNRTG	2 cut(s)	534, 948
MspI	CCGG	3 cut(s)	540, 842, 1056
MspR9I	CCNGG	2 cut(s)	541, 1056
Mva1269I	GAATGC	2 cut(s)	82, 373
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	485, 613, 838
NarI	GGCGCC	1 cut(s)	23
NciI	CCSGG	2 cut(s)	541, 1056
NdeI	CATATG	2 cut(s)	958, 1334
NdeII	GATC	6 cut(s)	558, 704, 953, 1108, 1389, 1402
NlaIII	CATG	7 cut(s)	620, 724, 947, 979, 1094, 1433, 1450
NlaIV	GGNNCC	3 cut(s)	24, 675, 939
NmuCI	GTSAC	2 cut(s)	463, 1346
NsbI	TGCGCA	1 cut(s)	390
NsiI	ATGCAT	2 cut(s)	618, 985
NspI	RCATGY	1 cut(s)	979
NspV	TTCGAA	1 cut(s)	1312
PagI	TCATGA	1 cut(s)	1090
PceI	AGGCCT	1 cut(s)	59
PciI	ACATGT	1 cut(s)	975
PciSI	GCTCTTC	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PctI	GAATGC	2 cut(s)	82, 373
PfeI	GAWTC	1 cut(s)	750
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	294
PluTI	GGCGCC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	294
PscI	ACATGT	1 cut(s)	975
PshBI	ATTAAT	1 cut(s)	726
PspN4I	GGNNCC	3 cut(s)	24, 675, 939
RsaI	GTAC	2 cut(s)	687, 1291
RsaNI	GTAC	2 cut(s)	686, 1290
RseI	CAYNNNNRTG	2 cut(s)	534, 948
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	5 cut(s)	726, 1169, 1283, 1320, 1364
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	6 cut(s)	558, 704, 953, 1108, 1389, 1402
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	2 cut(s)	541, 1056
SduI	GDGCHC	1 cut(s)	1442
SfaNI	GCATC	3 cut(s)	181, 622, 992
SfoI	GGCGCC	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	1312
SmiMI	CAYNNNNRTG	2 cut(s)	534, 948
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	381
SspDI	GGCGCC	1 cut(s)	22
SspI	AATATT	1 cut(s)	895
SspMI	CTAG	6 cut(s)	66, 210, 638, 678, 747, 1122
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	539, 1054
TaaI	ACNGT	3 cut(s)	227, 798, 1256
TaiI	ACGT	2 cut(s)	913, 1218
TaqI	TCGA	7 cut(s)	333, 561, 753, 774, 886, 971, 1312
TatI	WGTACW	2 cut(s)	685, 1289
TfiI	GAWTC	1 cut(s)	750
Tru1I	TTAA	5 cut(s)	726, 1169, 1283, 1320, 1364
Tru9I	TTAA	5 cut(s)	726, 1169, 1283, 1320, 1364
TscAI	CASTG	1 cut(s)	1261
TseFI	GTSAC	2 cut(s)	463, 1346
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	2 cut(s)	463, 1346
TspDTI	ATGAA	4 cut(s)	189, 1043, 1079, 1107
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	1261
VspI	ATTAAT	1 cut(s)	726
XapI	RAATTY	4 cut(s)	274, 1094, 1155, 1374
XbaI	TCTAGA	1 cut(s)	65
XceI	RCATGY	1 cut(s)	979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1427
XspI	CTAG	6 cut(s)	66, 210, 638, 678, 747, 1122
Zsp2I	ATGCAT	2 cut(s)	618, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.