RLG00000012653

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013442
Physical Location & Seq
Forward (+)
20939200 .. 20941098
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012653

Sequence Viewer

Length: 1899 bp
ATGAACTCCACCATCTACAACCCCACAACTCCTCACCCATCTTCGCAATTCCCACAAATCAAAACATGCAAAACCTTGAAAGACTTGCAACAAGTGCATGCCCACTTCATCAAAACCCGCCAAATCCACGACCCTCTTGCCGCGGCCGAAATCCTCCGATTCTACGCCCTCTCAAATCACCGCAACATTGAGCATGCTCGTGCCGTATTCAACCAAATTCAGACACCCAATTGCTTCTCCTGGAACACCATCATCAGAGCTCTTGCCGAGAGCTCTGTTTCCGAGCACCCACTTGAGGCTCTGTTTTTGTTTTATCGAATGGTTTGCGATGGTTTGGTGGCACCAAATAAGTTCACGTTTCCTTCTGTGTTGAAGGCCTGTTCTAGAATAGGGAATGCTCAGGTTGGCAAAAGTGTGCATGGGATGGTTGTGAAGTTTGGGTTGGATGATGATGAGTTTGTTGTGAGTAGTCTTGTGAGGATGTATGTAATGTGTGGGGTTATGGAGGATGCACATTCATTGTTTTCTAGGAGTGTAGCTGATTGTGGTGATTTGAATGAGAAGAAGCAAGAGGGTAATGTGGTTTTGTGGAATTTGATAGTTGATGGGCATGTGAGGCTCGGGGAGTTTGGAGCTGCACGGGAGCTGTTCGACAAAATGCCTCAAAGAAGTGTTGTTTCGTGGAATGCGATGATATCTGCGTATGCGCAAAATGGGTTCTTTAGGGAAGCTGTAGAAATGTTCCGTGATATGCAGATTGGGGATGTATGCCCAAATTATGTGACTTTGGTTAGCGTCTTGCCTGCGATAGCACGACTTGGTGTGCTTGAATTGGGGAAATGGGTGCATTTGTATGCCGGGAAGCATAAGATTGGGATCGATGATGTGCTTGGTTCTGCTTTGGTTGATATGTATTCCAAGTGTGGCGACATTGAGAAGGCGCTTCTAGTTTTTGAGCAACTGCCTAAAAAGAATGTGATCACTTGGAATGCCATAATCAGTGGGCTTGCTATGCATGGTAGAGGAAAGGATGCACTAGATTATTTTTCAAAGATGGAAAGAGCTGGTGTGGTGCCTAGTGATGTAACATATATTGGTCTCTTGAGTGCTTGTAGCCATGGAGGTATGGTGGAGCAGGGCAGATCACTCTTCAACCACATGATTAATGTAGTTGGTTTAGAACCTAGAATCGAGCATTATGGGTGTATGGTCGATTTATTAGGCCGTGCTGGACTGTTAGAAGAAGCTGAAGAGCTTATACTAAATATGCCAATTCAGCCGGATGATGTTATATGGAAGGCATTGCTTGGTGCTTGCAAGGTACAAGGGGATATTGAGATGGGAGAACGTGTCGCAAAGATTTTGATGGACTTGGCTCCCCATGATAGTGGATCATACATTGCTCTATCAAACATGTATGCATTTTTGGGAAATTGGGAGGCAGTTTCAAATGTGAGATTGTTAATGAAGGATATGGACATTAGGAAAGACCCTGGTGGTAGTTGGATTGAGCTTGACGGAGTGCTTCATGAATTTCTGGTTGAAGATCAATCACATTCTAGAGCAGGAGAAATCCGTTCAATGCTGGAAGAAATTTCCAACAAGTTAAGGTTAGAAGGATATAAGCCTAACACCACACAAGTATTGCTCAACGTGGCTGAAGAAGAAAAACAAAGTGCTTTACATTATCACAGTGAGAAAATTGCAGTTGCCTTTGGCTTAATCAGTACAGCCCCTCAATCGCCACTTCGAATTGTTAAGAACCTACGCATATGCGAGGATTGTCACTCCTCTATAAAGCTAATCTCAAAAATTTACAAACGAAAGATCATTGTTCGGGACCGTAAGCGCTTCCACCACTTTGAGCATGGGTTGTGCTCTTGCATGGACTACTGGTAA

Protein Analysis

633

Amino Acids

70.92

Weight (kDa)

6.42

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 224 - 267 1.3e-08 PPR repeat family
PPR PF01535 226 - 252 6.5e-09 PPR repeat
PPR_2 PF13041 324 - 372 2.9e-12 PPR repeat family
PPR PF01535 327 - 357 5.2e-07 PPR repeat
E_motif PF20431 444 - 504 1.1e-16 E motif
DYW_deaminase PF14432 540 - 632 6.5e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013442)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48910
fragaria_vesca FvH4_2g19560 FvH4_2g19570
malus_domestica MD05G1179700.v1.1 MD10G1169300.v1.1
prunus_persica Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1
pyrus_communis pycom05g16620 pycom10g14610
rosa_chinensis RchiOBHm_Chr6g0285331
rosa_laevigata RLG00000012653
rosa_multiflora Rmu_sc0011958.1_g000003
rosa_roxburghii Rroxscaffold_7G00183350
rosa_rugosa Rorug06G0173600
rosa_samantha Rh6AG284300 Rh6BG285100 Rh6DG279600
rosa_wichuraiana Rw6G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 708
AccB1I GGYRCC 2 cut(s) 340, 1072
AccII CGCG 1 cut(s) 143
AciI CCGC 4 cut(s) 118, 141, 143, 181
AclWI GGATC 2 cut(s) 884, 1399
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 5 cut(s) 216, 592, 1532, 1593, 1812
AcuI CTGAAG 2 cut(s) 1269, 1680
AfaI GTAC 2 cut(s) 1323, 1729
AfeI AGCGCT 1 cut(s) 1850
AfiI CCNNNNNNNGG 1 cut(s) 295
AflIII ACRYGT 2 cut(s) 1348, 1413
AjnI CCWGG 2 cut(s) 239, 1492
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
Alw21I GWGCWC 4 cut(s) 262, 275, 288, 1880
Alw26I GTCTC 1 cut(s) 1103
AlwI GGATC 2 cut(s) 884, 1399
Ama87I CYCGRG 1 cut(s) 620
Aor51HI AGCGCT 1 cut(s) 1850
AoxI GGCC 3 cut(s) 144, 375, 1222
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 5 cut(s) 216, 592, 1532, 1593, 1812
AseI ATTAAT 1 cut(s) 1164
AspLEI GCGC 3 cut(s) 709, 943, 1851
AspS9I GGNCC 1 cut(s) 1840
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 3 cut(s) 26, 170, 560
AsuII TTCGAA 1 cut(s) 1750
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 1 cut(s) 1840
BanI GGYRCC 2 cut(s) 340, 1072
BanII GRGCYC 2 cut(s) 262, 275
BarI GAAGNNNNNNTAC 2 cut(s) 1242, 1274
BauI CACGAG 1 cut(s) 198
Bbv12I GWGCWC 4 cut(s) 262, 275, 288, 1880
BbvI GCAGC 1 cut(s) 622
BccI CCATC 9 cut(s) 20, 46, 257, 323, 418, 599, 1048, 1333, 1360
BceAI ACGGC 2 cut(s) 188, 1209
BcgI CGANNNNNNTGC 4 cut(s) 119, 153, 306, 340
BciT130I CCWGG 2 cut(s) 241, 1494
BclI TGATCA 1 cut(s) 978
BcnI CCSGG 1 cut(s) 859
BcoDI GTCTC 1 cut(s) 1103
BfaI CTAG 7 cut(s) 384, 528, 947, 1037, 1077, 1185, 1560
BfmI CTRYAG 1 cut(s) 732
BfoI RGCGCY 2 cut(s) 944, 1852
BisI GCNGC 3 cut(s) 141, 144, 636
BlsI GCNGC 3 cut(s) 142, 145, 637
Bme1390I CCNGG 3 cut(s) 241, 859, 1494
Bme18I GGWCC 1 cut(s) 1840
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 1840
BmiI GGNNCC 4 cut(s) 342, 1074, 1377, 1841
BmrFI CCNGG 3 cut(s) 241, 859, 1494
BmsI GCATC 2 cut(s) 499, 1021
Bpu10I CCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 1750
BpuEI CTTGAG 2 cut(s) 314, 1123
BpuMI CCSGG 1 cut(s) 859
Bsa29I ATCGAT 1 cut(s) 879
BsaBI GATNNNNATC 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 1103
BsaJI CCNNGG 3 cut(s) 141, 1117, 1492
BsaXI ACNNNNNCTCC 4 cut(s) 1113, 1143, 1335, 1365
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 1898
Bse3DI GCAATG 2 cut(s) 1301, 1398
Bse8I GATNNNNATC 1 cut(s) 875
BseBI CCWGG 2 cut(s) 241, 1494
BseCI ATCGAT 1 cut(s) 879
BseDI CCNNGG 3 cut(s) 141, 1117, 1492
BseGI GGATG 7 cut(s) 429, 451, 486, 514, 769, 1036, 1288
BseJI GATNNNNATC 1 cut(s) 875
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 2 cut(s) 1301, 1398
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 1898
BseRI GAGGAG 2 cut(s) 21, 1780
BseX3I CGGCCG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 622
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 146, 377, 1224
BshNI GGYRCC 2 cut(s) 340, 1072
BshVI ATCGAT 1 cut(s) 879
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 4 cut(s) 262, 275, 288, 1880
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 2 cut(s) 858, 1280
BslFI GGGAC 1 cut(s) 1853
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 1103
BsmFI GGGAC 1 cut(s) 1853
BsmI GAATGC 3 cut(s) 400, 691, 994
BsnI GGCC 3 cut(s) 146, 377, 1224
Bso31I GGTCTC 1 cut(s) 1103
BsoBI CYCGRG 1 cut(s) 620
Bsp119I TTCGAA 1 cut(s) 1750
Bsp1286I GDGCHC 4 cut(s) 262, 275, 288, 1880
Bsp143I GATC 6 cut(s) 876, 978, 1142, 1391, 1546, 1827
Bsp19I CCATGG 1 cut(s) 1117
BspACI CCGC 4 cut(s) 118, 141, 143, 181
BspANI GGCC 3 cut(s) 146, 377, 1224
BspCNI CTCAG 1 cut(s) 412
BspDI ATCGAT 1 cut(s) 879
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 1528
BspLI GGNNCC 4 cut(s) 342, 1074, 1377, 1841
BspPI GGATC 2 cut(s) 884, 1399
BspQI GCTCTTC 1 cut(s) 1245
BspT104I TTCGAA 1 cut(s) 1750
BspT107I GGYRCC 2 cut(s) 340, 1072
BspTNI GGTCTC 1 cut(s) 1103
BsrDI GCAATG 2 cut(s) 1301, 1398
BsrI ACTGG 1 cut(s) 1898
BssECI CCNNGG 3 cut(s) 141, 1117, 1492
BssMI GATC 6 cut(s) 876, 978, 1142, 1391, 1546, 1827
BssSI CACGAG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 1117
Bst2BI CACGAG 1 cut(s) 198
Bst2UI CCWGG 2 cut(s) 241, 1494
Bst4CI ACNGT 3 cut(s) 1236, 1694, 1844
Bst6I CTCTTC 2 cut(s) 1154, 1245
BstAPI GCANNNNNTGC 1 cut(s) 94
BstBI TTCGAA 1 cut(s) 1750
BstC8I GCNNGC 5 cut(s) 99, 195, 804, 1008, 1315
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 2 cut(s) 141, 1117
BstF5I GGATG 7 cut(s) 429, 451, 486, 514, 769, 1036, 1288
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 2 cut(s) 944, 1852
BstHHI GCGC 3 cut(s) 709, 943, 1851
BstKTI GATC 6 cut(s) 879, 981, 1145, 1394, 1549, 1830
BstMAI GTCTC 1 cut(s) 1103
BstMBI GATC 6 cut(s) 876, 978, 1142, 1391, 1546, 1827
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 94, 616, 1012, 1276
BstNI CCWGG 2 cut(s) 241, 1494
BstNSI RCATGY 5 cut(s) 69, 101, 197, 614, 1417
BstSCI CCNGG 3 cut(s) 239, 857, 1492
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 622
BstXI CCANNNNNNTGG 1 cut(s) 1388
BstZI CGGCCG 1 cut(s) 144
Bsu15I ATCGAT 1 cut(s) 879
BsuRI GGCC 3 cut(s) 146, 377, 1224
BsuTUI ATCGAT 1 cut(s) 879
BtgI CCRYGG 2 cut(s) 141, 1117
BtgZI GCGATG 2 cut(s) 342, 704
BtsCI GGATG 7 cut(s) 429, 451, 486, 514, 769, 1036, 1288
BtsIMutI CAGTG 2 cut(s) 1006, 1699
Cac8I GCNNGC 5 cut(s) 99, 195, 804, 1008, 1315
CciI TCATGA 1 cut(s) 1528
CfoI GCGC 3 cut(s) 709, 943, 1851
Cfr13I GGNCC 1 cut(s) 1840
Cfr42I CCGCGG 1 cut(s) 144
ClaI ATCGAT 1 cut(s) 879
CseI GACGC 1 cut(s) 784
Csp6I GTAC 2 cut(s) 1322, 1728
CviQI GTAC 2 cut(s) 1322, 1728
DdeI CTNAG 1 cut(s) 399
DpnI GATC 6 cut(s) 878, 980, 1144, 1393, 1548, 1829
DpnII GATC 6 cut(s) 876, 978, 1142, 1391, 1546, 1827
EaeI YGGCCR 1 cut(s) 144
EagI CGGCCG 1 cut(s) 144
Eam1104I CTCTTC 2 cut(s) 1154, 1245
EarI CTCTTC 2 cut(s) 1154, 1245
Ecl136II GAGCTC 2 cut(s) 260, 273
EclXI CGGCCG 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 1117
Eco147I AGGCCT 1 cut(s) 377
Eco24I GRGCYC 2 cut(s) 262, 275
Eco31I GGTCTC 1 cut(s) 1103
Eco32I GATATC 1 cut(s) 696
Eco47I GGWCC 1 cut(s) 1840
Eco47III AGCGCT 1 cut(s) 1850
Eco52I CGGCCG 1 cut(s) 144
Eco53kI GAGCTC 2 cut(s) 260, 273
Eco57I CTGAAG 2 cut(s) 1269, 1680
Eco88I CYCGRG 1 cut(s) 620
EcoICRI GAGCTC 2 cut(s) 260, 273
EcoRII CCWGG 2 cut(s) 239, 1492
EcoRV GATATC 1 cut(s) 696
EcoT14I CCWWGG 1 cut(s) 1117
EcoT22I ATGCAT 2 cut(s) 1017, 1423
EcoT38I GRGCYC 2 cut(s) 262, 275
ErhI CCWWGG 1 cut(s) 1117
FaqI GGGAC 1 cut(s) 1853
FauI CCCGC 1 cut(s) 125
FauNDI CATATG 1 cut(s) 1772
FbaI TGATCA 1 cut(s) 978
Fnu4HI GCNGC 3 cut(s) 141, 144, 636
FokI GGATG 7 cut(s) 436, 458, 493, 521, 776, 1043, 1295
FriOI GRGCYC 2 cut(s) 262, 275
Fsp4HI GCNGC 3 cut(s) 141, 144, 636
FspBI CTAG 7 cut(s) 384, 528, 947, 1037, 1077, 1185, 1560
FspI TGCGCA 1 cut(s) 708
GlaI GCGC 3 cut(s) 708, 942, 1850
GluI GCNGC 3 cut(s) 141, 144, 636
HaeII RGCGCY 2 cut(s) 944, 1852
HaeIII GGCC 3 cut(s) 146, 377, 1224
HapII CCGG 2 cut(s) 858, 1280
HgaI GACGC 1 cut(s) 784
HhaI GCGC 3 cut(s) 709, 943, 1851
Hin6I GCGC 3 cut(s) 707, 941, 1849
HinP1I GCGC 3 cut(s) 707, 941, 1849
HinfI GANTC 2 cut(s) 159, 1188
HpaII CCGG 2 cut(s) 858, 1280
HphI GGTGA 3 cut(s) 26, 170, 560
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 4 cut(s) 158, 222, 257, 283
Hpy188III TCNNGA 5 cut(s) 384, 1102, 1529, 1560, 1838
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 6 cut(s) 367, 372, 931, 1291, 1462, 1610
HpyCH4III ACNGT 3 cut(s) 1236, 1694, 1844
HpyCH4IV ACGT 3 cut(s) 356, 1348, 1653
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 616, 1012, 1276
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 3 cut(s) 356, 1348, 1653
HspAI GCGC 3 cut(s) 707, 941, 1849
Ksp22I TGATCA 1 cut(s) 978
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 6 cut(s) 876, 978, 1142, 1391, 1546, 1827
LguI GCTCTTC 1 cut(s) 1245
LmnI GCTCC 4 cut(s) 632, 643, 1132, 1381
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 2 cut(s) 499, 1021
MaeI CTAG 7 cut(s) 384, 528, 947, 1037, 1077, 1185, 1560
MaeII ACGT 3 cut(s) 356, 1348, 1653
MaeIII GTNAC 3 cut(s) 781, 1084, 1784
MalI GATC 6 cut(s) 878, 980, 1144, 1393, 1548, 1829
MboI GATC 6 cut(s) 876, 978, 1142, 1391, 1546, 1827
MboII GAAGA 9 cut(s) 33, 574, 1141, 1253, 1262, 1556, 1601, 1673, 1676
MfeI CAATTG 1 cut(s) 229
MhlI GDGCHC 4 cut(s) 262, 275, 288, 1880
MmeI TCCRAC 3 cut(s) 423, 1484, 1623
Mph1103I ATGCAT 2 cut(s) 1017, 1423
MseI TTAA 5 cut(s) 1164, 1463, 1607, 1721, 1758
MslI CAYNNNNRTG 3 cut(s) 198, 852, 1386
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 858, 1280
MspR9I CCNGG 3 cut(s) 241, 859, 1494
MunI CAATTG 1 cut(s) 229
Mva1269I GAATGC 3 cut(s) 400, 691, 994
MvaI CCWGG 2 cut(s) 241, 1494
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 94, 616, 1012, 1276
NciI CCSGG 1 cut(s) 859
NcoI CCATGG 1 cut(s) 1117
NdeI CATATG 1 cut(s) 1772
NdeII GATC 6 cut(s) 876, 978, 1142, 1391, 1546, 1827
NlaIV GGNNCC 4 cut(s) 342, 1074, 1377, 1841
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 781, 1784
NsbI TGCGCA 1 cut(s) 708
NsiI ATGCAT 2 cut(s) 1017, 1423
NspI RCATGY 5 cut(s) 69, 101, 197, 614, 1417
NspV TTCGAA 1 cut(s) 1750
PaeI GCATGC 2 cut(s) 101, 197
PagI TCATGA 1 cut(s) 1528
PceI AGGCCT 1 cut(s) 377
PciI ACATGT 1 cut(s) 1413
PciSI GCTCTTC 1 cut(s) 1245
PcsI WCGNNNNNNNCGW 1 cut(s) 686
PctI GAATGC 3 cut(s) 400, 691, 994
PfeI GAWTC 2 cut(s) 159, 1188
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 3 cut(s) 142, 145, 637
PscI ACATGT 1 cut(s) 1413
PshBI ATTAAT 1 cut(s) 1164
Psp124BI GAGCTC 2 cut(s) 262, 275
Psp6I CCWGG 2 cut(s) 239, 1492
PspGI CCWGG 2 cut(s) 239, 1492
PspN4I GGNNCC 4 cut(s) 342, 1074, 1377, 1841
PspPI GGNCC 1 cut(s) 1840
RsaI GTAC 2 cut(s) 1323, 1729
RsaNI GTAC 2 cut(s) 1322, 1728
RseI CAYNNNNRTG 3 cut(s) 198, 852, 1386
SacI GAGCTC 2 cut(s) 262, 275
SacII CCGCGG 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 1245
SaqAI TTAA 5 cut(s) 1164, 1463, 1607, 1721, 1758
SatI GCNGC 3 cut(s) 141, 144, 636
Sau3AI GATC 6 cut(s) 876, 978, 1142, 1391, 1546, 1827
Sau96I GGNCC 1 cut(s) 1840
ScrFI CCNGG 3 cut(s) 241, 859, 1494
SduI GDGCHC 4 cut(s) 262, 275, 288, 1880
SfaNI GCATC 2 cut(s) 499, 1021
SfcI CTRYAG 1 cut(s) 732
Sfr303I CCGCGG 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 1750
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 1 cut(s) 1840
SmiMI CAYNNNNRTG 3 cut(s) 198, 852, 1386
SmlI CTYRAG 2 cut(s) 293, 1102
SmoI CTYRAG 2 cut(s) 293, 1102
SphI GCATGC 2 cut(s) 101, 197
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 4 cut(s) 118, 141, 143, 181
SspMI CTAG 7 cut(s) 384, 528, 947, 1037, 1077, 1185, 1560
SstI GAGCTC 2 cut(s) 262, 275
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 3 cut(s) 239, 857, 1492
StyI CCWWGG 1 cut(s) 1117
TaaI ACNGT 3 cut(s) 1236, 1694, 1844
TaiI ACGT 3 cut(s) 359, 1351, 1656
TaqI TCGA 6 cut(s) 316, 651, 879, 1191, 1212, 1750
TatI WGTACW 1 cut(s) 1727
TauI GCSGC 2 cut(s) 143, 146
TfiI GAWTC 2 cut(s) 159, 1188
Tru1I TTAA 5 cut(s) 1164, 1463, 1607, 1721, 1758
Tru9I TTAA 5 cut(s) 1164, 1463, 1607, 1721, 1758
TscAI CASTG 2 cut(s) 1006, 1699
TseFI GTSAC 2 cut(s) 781, 1784
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 2 cut(s) 781, 1784
TspDTI ATGAA 6 cut(s) 17, 97, 507, 1481, 1517, 1545
TspGWI ACGGA 3 cut(s) 734, 1533, 1565
TspRI CASTG 2 cut(s) 1006, 1699
VpaK11BI GGWCC 1 cut(s) 1840
VspI ATTAAT 1 cut(s) 1164
XapI RAATTY 5 cut(s) 216, 592, 1532, 1593, 1812
XbaI TCTAGA 2 cut(s) 383, 1559
XceI RCATGY 5 cut(s) 69, 101, 197, 614, 1417
XcmI CCANNNNNNNNNTGG 1 cut(s) 1865
XspI CTAG 7 cut(s) 384, 528, 947, 1037, 1077, 1185, 1560
Zsp2I ATGCAT 2 cut(s) 1017, 1423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.