Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013442

Physical Location & Seq

Genomic Coordinates Reverse (-)

50926883 .. 50929511

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG285100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGAACTCCTCCACCATCTACAACCCCACAACTCCTCACCCATCTTCACAATTCCCACAAATCAAAACGTGCAAAACCTTGAAAGACTTGCAACAAGTGCATGCCCACTTCATCAAAACCCGCCAAATCCACGACCCTCTTGCCGCGGCCGAAATCCTCCGATTCTACGCCCTCTCAAATCACCGCAACATTGAGTATGCTCGTGCCGTGTTCAACCAAATTCAGACACCCAATTGCTTCTCCTGGAACACCATCGTCAGAGCTCTTGCCGAGAGCTCTGTTTCCGAGCACCCACTTGAGGCTCTGTTCTTGTTTTATCGAATGGTTTGCGATGGTTTGGTGGCGCCAAATAAGTTCACATTTCCTTCTGTGTTGAAGGCCTGTTCTAGGATAGGGAATGCTCAGGCTGGCAGAAGTGTTCACGGGATGGTTGTGAAGTATGGGTTGGATGATGATGAGTTTGTTGTGAGTAGTCTTGTGAGGATGTATGTAATGTGTGGGGTTATGGAGGATGCACATTCATTGTTTTCTACGAGTGTAGCTGACTGTGGTGATTTGAATGAGAAGAAGCAAGAGGGTAATGTGGTTTTGTGGAATTTGATAGTTGATGGCCATGTGAGACTCGGGGAGTTTGGAGCTGCACGGGAGCTGTTCGACAAAATGCCTCAAAGAAGTGTTGTTTCATGGAATGCGATGATATCCGCGTATGCGCAAAATGGGTTCTTTGGGGAAGCCGTAGAAATGTTCCGTGATATGCAGATTGGGGATGTATGCCCAAATTATGTGACTTTGGTTAGCGCCTTGCCTGCGATAGCACGACTTGGTGTGCTTGAATTGGGGAAATGGGTGCATTTGTATGCCGGGAAGCATAAGATTGGGATCGATGATGTGCTTGGTTCTGCTTTGGTTGATATGTATTCCAAGTGTGGCGACATTGAGAAGGCGCTTCTAGTTTTTGAGCAACTGCCTAAAAAGAATGTGATCACTTGGAATGCCATAATCAGTGGGCTTGCTATGCATGGTAGAGGAAAGGATGCACTAGATTATTTTTCAAAGATGGAAAGAGCTGGTGTGGTGCCTAGTGATGTAACATATATTGGTCTCTTGAGTGCTTGTAGCCATGGAGGTATGGTGGAGCAGGGCAGATCATTCTTCAACCACATGATTAATGTAGTTGGCTTAGAACCTAGAATCGAGCATTATGGGTGTATGGTCGATTTATTAGGCCGTGCTGGACTGTTAGAAGAAGCTGAAGAGCTTATACTAAATATGCCAATTCAGCCGGATGATGTTATATGGAAGGCATTGCTTGGTGCTTGCAAGGTACAAGGGAATATTGAGATGGGAGAACGTGTCGCAAAGATTTTGATGGACTTGGCTCCCCATGATAGTGGATCATATGTTGCTCTATCGAACATGTATGCATCTTTGGGAAATTGGGAGGCAGTTTCAAATGTGAGATTGTTGATGAAGGATATGGACATTAGGAAAGACCCCGGTGGTAGTTGGATTGAGCTTGATGGAGTGCTTCATGAATTTCTGGTTGAAGATCAATCGCATTCTAGAGCAGAAGAAATCCATTCAATGCTGGAAGAAATTTCCAACAAGTTAAGGTTAGAAGGATATAAGCCTAACACCACACAAGTATTGCTCAACGTGGCTGAAGAAGAAAAACAAAGTGCTTTACATTATCACAGTGAGAAAATTGCAGTTGCCTTTGGCTTAATCAGTACAGCCCCTCAATCGCCACTTCAAATTGTTAAGAACCTACGCATATGCGAGGATTGTCACTCCTCTATAAAGTTAATCTCAAAAATTTACAAACGAAAGATCATTGTTCGGGACCGTAAGCGCTTCCACCACTTTGAGCATGGGTTGTGCTCTTGCATGGACTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

633

Amino Acids

70.84

Weight (kDa)

6.15

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	225 - 264	8.6e-08	PPR repeat family
PPR	PF01535	227 - 253	2.1e-08	PPR repeat
PPR_2	PF13041	325 - 373	2.9e-12	PPR repeat family
PPR	PF01535	328 - 358	5.2e-07	PPR repeat
E_motif	PF20431	445 - 505	4.2e-17	E motif
DYW_deaminase	PF14432	541 - 633	1.3e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48910
fragaria_vesca	FvH4_2g19560 FvH4_2g19570
malus_domestica	MD05G1179700.v1.1 MD10G1169300.v1.1
prunus_persica	Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1
pyrus_communis	pycom05g16620 pycom10g14610
rosa_chinensis	RchiOBHm_Chr6g0285331
rosa_laevigata	RLG00000012653
rosa_multiflora	Rmu_sc0011958.1_g000003
rosa_roxburghii	Rroxscaffold_7G00183350
rosa_rugosa	Rorug06G0173600
rosa_samantha	Rh6AG284300 Rh6BG285100 Rh6DG279600
rosa_wichuraiana	Rw6G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	711
AccB1I	GGYRCC	2 cut(s)	343, 1075
AccII	CGCG	2 cut(s)	146, 704
AciI	CCGC	5 cut(s)	121, 144, 146, 184, 702
AclWI	GGATC	2 cut(s)	887, 1402
AcoI	YGGCCR	2 cut(s)	147, 610
AcsI	RAATTY	5 cut(s)	219, 595, 1535, 1596, 1815
AcuI	CTGAAG	2 cut(s)	1272, 1683
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	2 cut(s)	1326, 1732
AfeI	AGCGCT	1 cut(s)	1853
AfiI	CCNNNNNNNGG	2 cut(s)	298, 387
AflIII	ACRYGT	2 cut(s)	1351, 1416
AjnI	CCWGG	1 cut(s)	242
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	9 cut(s)	263, 276, 542, 638, 649, 1067, 1250, 1258, 1516
AluI	AGCT	9 cut(s)	263, 276, 542, 638, 649, 1067, 1250, 1258, 1516
Alw21I	GWGCWC	4 cut(s)	265, 278, 291, 1883
Alw26I	GTCTC	2 cut(s)	613, 1106
AlwI	GGATC	2 cut(s)	887, 1402
Ama87I	CYCGRG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	1853
AoxI	GGCC	4 cut(s)	147, 378, 610, 1225
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	5 cut(s)	219, 595, 1535, 1596, 1815
AseI	ATTAAT	1 cut(s)	1167
AspLEI	GCGC	5 cut(s)	346, 712, 800, 946, 1854
AspS9I	GGNCC	1 cut(s)	1843
AsuC2I	CCSGG	2 cut(s)	862, 1497
AsuHPI	GGTGA	3 cut(s)	29, 173, 563
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	1843
BalI	TGGCCA	1 cut(s)	612
BanI	GGYRCC	2 cut(s)	343, 1075
BanII	GRGCYC	2 cut(s)	265, 278
BarI	GAAGNNNNNNTAC	2 cut(s)	1245, 1277
BauI	CACGAG	1 cut(s)	201
Bbv12I	GWGCWC	4 cut(s)	265, 278, 291, 1883
BbvI	GCAGC	1 cut(s)	625
BceAI	ACGGC	3 cut(s)	191, 719, 1212
BcgI	CGANNNNNNTGC	4 cut(s)	122, 156, 309, 343
BciT130I	CCWGG	1 cut(s)	244
BclI	TGATCA	1 cut(s)	981
BcnI	CCSGG	2 cut(s)	862, 1497
BcoDI	GTCTC	2 cut(s)	613, 1106
BfaI	CTAG	6 cut(s)	387, 950, 1040, 1080, 1188, 1563
BfoI	RGCGCY	4 cut(s)	347, 801, 947, 1855
BisI	GCNGC	3 cut(s)	144, 147, 639
BlsI	GCNGC	3 cut(s)	145, 148, 640
Bme1390I	CCNGG	3 cut(s)	244, 862, 1497
Bme18I	GGWCC	1 cut(s)	1843
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	1843
BmiI	GGNNCC	4 cut(s)	345, 1077, 1380, 1844
BmrFI	CCNGG	3 cut(s)	244, 862, 1497
BmsI	GCATC	3 cut(s)	502, 1024, 1433
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	317, 1126
BpuMI	CCSGG	2 cut(s)	862, 1497
Bsa29I	ATCGAT	1 cut(s)	882
BsaBI	GATNNNNATC	1 cut(s)	878
BsaHI	GRCGYC	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	1106
BsaJI	CCNNGG	3 cut(s)	144, 1120, 1495
BsaXI	ACNNNNNCTCC	4 cut(s)	1116, 1146, 1338, 1368
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 387
Bse1I	ACTGG	1 cut(s)	1901
Bse3DI	GCAATG	1 cut(s)	1304
Bse8I	GATNNNNATC	1 cut(s)	878
BseBI	CCWGG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	882
BseDI	CCNNGG	3 cut(s)	144, 1120, 1495
BseGI	GGATG	7 cut(s)	432, 454, 489, 517, 772, 1039, 1291
BseJI	GATNNNNATC	1 cut(s)	878
BseLI	CCNNNNNNNGG	2 cut(s)	298, 387
BseMI	GCAATG	1 cut(s)	1304
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	1 cut(s)	1901
BseRI	GAGGAG	2 cut(s)	24, 1783
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	2 cut(s)	146, 704
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	4 cut(s)	149, 380, 612, 1227
BshNI	GGYRCC	2 cut(s)	343, 1075
BshVI	ATCGAT	1 cut(s)	882
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	4 cut(s)	265, 278, 291, 1883
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	3 cut(s)	861, 1283, 1497
BslFI	GGGAC	1 cut(s)	1856
BslI	CCNNNNNNNGG	2 cut(s)	298, 387
BsmAI	GTCTC	2 cut(s)	613, 1106
BsmFI	GGGAC	1 cut(s)	1856
BsmI	GAATGC	4 cut(s)	403, 694, 997, 1558
BsnI	GGCC	4 cut(s)	149, 380, 612, 1227
Bso31I	GGTCTC	1 cut(s)	1106
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	4 cut(s)	265, 278, 291, 1883
Bsp143I	GATC	6 cut(s)	879, 981, 1145, 1394, 1549, 1830
Bsp19I	CCATGG	1 cut(s)	1120
BspACI	CCGC	5 cut(s)	121, 144, 146, 184, 702
BspANI	GGCC	4 cut(s)	149, 380, 612, 1227
BspCNI	CTCAG	1 cut(s)	415
BspDI	ATCGAT	1 cut(s)	882
BspFNI	CGCG	2 cut(s)	146, 704
BspHI	TCATGA	1 cut(s)	1531
BspLI	GGNNCC	4 cut(s)	345, 1077, 1380, 1844
BspPI	GGATC	2 cut(s)	887, 1402
BspQI	GCTCTTC	1 cut(s)	1248
BspT107I	GGYRCC	2 cut(s)	343, 1075
BspTNI	GGTCTC	1 cut(s)	1106
BsrDI	GCAATG	1 cut(s)	1304
BsrI	ACTGG	1 cut(s)	1901
BssECI	CCNNGG	3 cut(s)	144, 1120, 1495
BssMI	GATC	6 cut(s)	879, 981, 1145, 1394, 1549, 1830
BssNI	GRCGYC	1 cut(s)	344
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	1120
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	4 cut(s)	548, 1239, 1697, 1847
Bst6I	CTCTTC	1 cut(s)	1248
BstACI	GRCGYC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstC8I	GCNNGC	5 cut(s)	102, 409, 807, 1011, 1318
BstDEI	CTNAG	2 cut(s)	402, 1180
BstDSI	CCRYGG	2 cut(s)	144, 1120
BstENI	CCTNNNNNAGG	1 cut(s)	385
BstF5I	GGATG	7 cut(s)	432, 454, 489, 517, 772, 1039, 1291
BstFNI	CGCG	2 cut(s)	146, 704
BstH2I	RGCGCY	4 cut(s)	347, 801, 947, 1855
BstHHI	GCGC	5 cut(s)	346, 712, 800, 946, 1854
BstKTI	GATC	6 cut(s)	882, 984, 1148, 1397, 1552, 1833
BstMAI	GTCTC	2 cut(s)	613, 1106
BstMBI	GATC	6 cut(s)	879, 981, 1145, 1394, 1549, 1830
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 806, 1015, 1279
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	2 cut(s)	104, 1420
BstSCI	CCNGG	3 cut(s)	242, 860, 1495
BstUI	CGCG	2 cut(s)	146, 704
BstV1I	GCAGC	1 cut(s)	625
BstXI	CCANNNNNNTGG	1 cut(s)	1391
BstZI	CGGCCG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	882
BsuRI	GGCC	4 cut(s)	149, 380, 612, 1227
BsuTUI	ATCGAT	1 cut(s)	882
BtgI	CCRYGG	2 cut(s)	144, 1120
BtgZI	GCGATG	2 cut(s)	345, 707
BtsCI	GGATG	7 cut(s)	432, 454, 489, 517, 772, 1039, 1291
BtsIMutI	CAGTG	2 cut(s)	1009, 1702
Cac8I	GCNNGC	5 cut(s)	102, 409, 807, 1011, 1318
CciI	TCATGA	1 cut(s)	1531
CfoI	GCGC	5 cut(s)	346, 712, 800, 946, 1854
Cfr13I	GGNCC	1 cut(s)	1843
Cfr42I	CCGCGG	1 cut(s)	147
ClaI	ATCGAT	1 cut(s)	882
Csp6I	GTAC	2 cut(s)	1325, 1731
CviQI	GTAC	2 cut(s)	1325, 1731
DdeI	CTNAG	2 cut(s)	402, 1180
DinI	GGCGCC	1 cut(s)	345
DpnI	GATC	6 cut(s)	881, 983, 1147, 1396, 1551, 1832
DpnII	GATC	6 cut(s)	879, 981, 1145, 1394, 1549, 1830
EaeI	YGGCCR	2 cut(s)	147, 610
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	1248
EarI	CTCTTC	1 cut(s)	1248
Ecl136II	GAGCTC	2 cut(s)	263, 276
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	1120
Eco147I	AGGCCT	1 cut(s)	380
Eco24I	GRGCYC	2 cut(s)	265, 278
Eco31I	GGTCTC	1 cut(s)	1106
Eco32I	GATATC	1 cut(s)	699
Eco47I	GGWCC	1 cut(s)	1843
Eco47III	AGCGCT	1 cut(s)	1853
Eco52I	CGGCCG	1 cut(s)	147
Eco53kI	GAGCTC	2 cut(s)	263, 276
Eco57I	CTGAAG	2 cut(s)	1272, 1683
Eco88I	CYCGRG	1 cut(s)	623
EcoICRI	GAGCTC	2 cut(s)	263, 276
EcoNI	CCTNNNNNAGG	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	1120
EcoT22I	ATGCAT	2 cut(s)	1020, 1426
EcoT38I	GRGCYC	2 cut(s)	265, 278
EgeI	GGCGCC	1 cut(s)	345
EheI	GGCGCC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	1120
FaqI	GGGAC	1 cut(s)	1856
FauI	CCCGC	1 cut(s)	128
FauNDI	CATATG	2 cut(s)	1399, 1775
FbaI	TGATCA	1 cut(s)	981
Fnu4HI	GCNGC	3 cut(s)	144, 147, 639
FokI	GGATG	7 cut(s)	439, 461, 496, 524, 779, 1046, 1298
FriOI	GRGCYC	2 cut(s)	265, 278
Fsp4HI	GCNGC	3 cut(s)	144, 147, 639
FspBI	CTAG	6 cut(s)	387, 950, 1040, 1080, 1188, 1563
FspI	TGCGCA	1 cut(s)	711
GlaI	GCGC	5 cut(s)	345, 711, 799, 945, 1853
GluI	GCNGC	3 cut(s)	144, 147, 639
HaeII	RGCGCY	4 cut(s)	347, 801, 947, 1855
HaeIII	GGCC	4 cut(s)	149, 380, 612, 1227
HapII	CCGG	3 cut(s)	861, 1283, 1497
HhaI	GCGC	5 cut(s)	346, 712, 800, 946, 1854
Hin1I	GRCGYC	1 cut(s)	344
Hin6I	GCGC	5 cut(s)	344, 710, 798, 944, 1852
HinP1I	GCGC	5 cut(s)	344, 710, 798, 944, 1852
HinfI	GANTC	3 cut(s)	162, 621, 1191
HpaII	CCGG	3 cut(s)	861, 1283, 1497
HphI	GGTGA	3 cut(s)	29, 173, 563
Hpy166II	GTNNAC	2 cut(s)	357, 421
Hpy188I	TCNGA	4 cut(s)	161, 225, 260, 286
Hpy188III	TCNNGA	4 cut(s)	1105, 1532, 1563, 1841
Hpy8I	GTNNAC	2 cut(s)	357, 421
HpyAV	CCTTC	6 cut(s)	370, 375, 934, 1294, 1465, 1613
HpyCH4III	ACNGT	4 cut(s)	548, 1239, 1697, 1847
HpyCH4IV	ACGT	3 cut(s)	68, 1351, 1656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 806, 1015, 1279
HpyF3I	CTNAG	2 cut(s)	402, 1180
HpySE526I	ACGT	3 cut(s)	68, 1351, 1656
Hsp92I	GRCGYC	1 cut(s)	344
HspAI	GCGC	5 cut(s)	344, 710, 798, 944, 1852
KasI	GGCGCC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	981
KspI	CCGCGG	1 cut(s)	147
Kzo9I	GATC	6 cut(s)	879, 981, 1145, 1394, 1549, 1830
LguI	GCTCTTC	1 cut(s)	1248
LmnI	GCTCC	4 cut(s)	635, 646, 1135, 1384
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	3 cut(s)	502, 1024, 1433
MaeI	CTAG	6 cut(s)	387, 950, 1040, 1080, 1188, 1563
MaeII	ACGT	3 cut(s)	68, 1351, 1656
MaeIII	GTNAC	3 cut(s)	784, 1087, 1787
MalI	GATC	6 cut(s)	881, 983, 1147, 1396, 1551, 1832
MboI	GATC	6 cut(s)	879, 981, 1145, 1394, 1549, 1830
MfeI	CAATTG	1 cut(s)	232
MhlI	GDGCHC	4 cut(s)	265, 278, 291, 1883
MlsI	TGGCCA	1 cut(s)	612
MluNI	TGGCCA	1 cut(s)	612
Mly113I	GGCGCC	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	615
MmeI	TCCRAC	3 cut(s)	426, 1487, 1626
Mox20I	TGGCCA	1 cut(s)	612
Mph1103I	ATGCAT	2 cut(s)	1020, 1426
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	5 cut(s)	1167, 1610, 1724, 1761, 1805
MslI	CAYNNNNRTG	2 cut(s)	855, 1389
Msp20I	TGGCCA	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	3 cut(s)	861, 1283, 1497
MspR9I	CCNGG	3 cut(s)	244, 862, 1497
MunI	CAATTG	1 cut(s)	232
Mva1269I	GAATGC	4 cut(s)	403, 694, 997, 1558
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	2 cut(s)	146, 704
MwoI	GCNNNNNNNGC	4 cut(s)	97, 806, 1015, 1279
NarI	GGCGCC	1 cut(s)	344
NciI	CCSGG	2 cut(s)	862, 1497
NcoI	CCATGG	1 cut(s)	1120
NdeI	CATATG	2 cut(s)	1399, 1775
NdeII	GATC	6 cut(s)	879, 981, 1145, 1394, 1549, 1830
NlaIV	GGNNCC	4 cut(s)	345, 1077, 1380, 1844
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	784, 1787
NsbI	TGCGCA	1 cut(s)	711
NsiI	ATGCAT	2 cut(s)	1020, 1426
NspI	RCATGY	2 cut(s)	104, 1420
PaeI	GCATGC	1 cut(s)	104
PagI	TCATGA	1 cut(s)	1531
PceI	AGGCCT	1 cut(s)	380
PciI	ACATGT	1 cut(s)	1416
PciSI	GCTCTTC	1 cut(s)	1248
PctI	GAATGC	4 cut(s)	403, 694, 997, 1558
PfeI	GAWTC	2 cut(s)	162, 1191
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	145, 148, 640
PleI	GAGTC	1 cut(s)	615
PluTI	GGCGCC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	615
PscI	ACATGT	1 cut(s)	1416
PshBI	ATTAAT	1 cut(s)	1167
Psp124BI	GAGCTC	2 cut(s)	265, 278
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	4 cut(s)	345, 1077, 1380, 1844
PspPI	GGNCC	1 cut(s)	1843
RsaI	GTAC	2 cut(s)	1326, 1732
RsaNI	GTAC	2 cut(s)	1325, 1731
RseI	CAYNNNNRTG	2 cut(s)	855, 1389
SacI	GAGCTC	2 cut(s)	265, 278
SacII	CCGCGG	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	1248
SaqAI	TTAA	5 cut(s)	1167, 1610, 1724, 1761, 1805
SatI	GCNGC	3 cut(s)	144, 147, 639
Sau3AI	GATC	6 cut(s)	879, 981, 1145, 1394, 1549, 1830
Sau96I	GGNCC	1 cut(s)	1843
SchI	GAGTC	1 cut(s)	615
ScrFI	CCNGG	3 cut(s)	244, 862, 1497
SduI	GDGCHC	4 cut(s)	265, 278, 291, 1883
SfaNI	GCATC	3 cut(s)	502, 1024, 1433
SfoI	GGCGCC	1 cut(s)	345
Sfr303I	CCGCGG	1 cut(s)	147
SgrBI	CCGCGG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	1843
SmiMI	CAYNNNNRTG	2 cut(s)	855, 1389
SmlI	CTYRAG	2 cut(s)	296, 1105
SmoI	CTYRAG	2 cut(s)	296, 1105
SphI	GCATGC	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	5 cut(s)	121, 144, 146, 184, 702
SspDI	GGCGCC	1 cut(s)	343
SspI	AATATT	1 cut(s)	1336
SspMI	CTAG	6 cut(s)	387, 950, 1040, 1080, 1188, 1563
SstI	GAGCTC	2 cut(s)	265, 278
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	242, 860, 1495
StyI	CCWWGG	1 cut(s)	1120
TaaI	ACNGT	4 cut(s)	548, 1239, 1697, 1847
TaiI	ACGT	3 cut(s)	71, 1354, 1659
TaqI	TCGA	6 cut(s)	319, 654, 882, 1194, 1215, 1412
TatI	WGTACW	1 cut(s)	1730
TauI	GCSGC	2 cut(s)	146, 149
TfiI	GAWTC	2 cut(s)	162, 1191
Tru1I	TTAA	5 cut(s)	1167, 1610, 1724, 1761, 1805
Tru9I	TTAA	5 cut(s)	1167, 1610, 1724, 1761, 1805
TscAI	CASTG	2 cut(s)	1009, 1702
TseFI	GTSAC	2 cut(s)	784, 1787
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	2 cut(s)	784, 1787
TspDTI	ATGAA	7 cut(s)	17, 100, 510, 672, 1484, 1520, 1548
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	2 cut(s)	1009, 1702
VpaK11BI	GGWCC	1 cut(s)	1843
VspI	ATTAAT	1 cut(s)	1167
XagI	CCTNNNNNAGG	1 cut(s)	385
XapI	RAATTY	5 cut(s)	219, 595, 1535, 1596, 1815
XbaI	TCTAGA	1 cut(s)	1562
XceI	RCATGY	2 cut(s)	104, 1420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1868
XspI	CTAG	6 cut(s)	387, 950, 1040, 1080, 1188, 1563
Zsp2I	ATGCAT	2 cut(s)	1020, 1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.