Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013442

Physical Location & Seq

Genomic Coordinates Reverse (-)

26141975 .. 26142963

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1169300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTATTGTAAGTGTGGGAGCATTGAGGACGCTCTTCGAGTTTTTAAGCACCTGCTTAAAAGCAATGTGATTACTTGGAATGCCATAATCAGTGGGCTTGCTATGCACAGTCGAGTTGATGATGCACTGGATTATTTTTCGAAGATGGAACGAGCTGGTGTGGTGCCTAGTGATGTAACATATATTGGTATCTTGAGTGCTTGTAGCCATGCTGGTTTGGTGGAGAAGGGAAGAGCATTCTTCATCCATATGATTAATGTAATTGGCTTAGAACCTAGAGTTGAGCATTATGGTTGTATGGTTGATTTATTAGGTCGTGCCGGATTGTTAGAAGAAGCTGAAGAGCTTATATTAAACATGCCAATTCAGCCGAATGATGTCACATGGAAGGCCTTGCTCGGTGCTTGCAAGATGCAAGGGAACATCGAGATGGGCAAACGAAATTGGGAGGCAGTTGCAAATGTGAGATTGCGGATGAAAGATATGGACATTAGGAAAGAACCGGGAGGTAGCTTGATTGAGCTTGATGGAGCAATTCACAAGTTTGTGGTGGAAGACGAATCCCATCATAGAGCCGGAGAAATCCATTCAATGTTGGAGGAAATTTCCGAAAAATTGAGCTTGGAAGGCCATAGGCCTAACACCACACAAGTGTTGCTCAACATGGATGAAGAAGAAAAACAAAGTGCATTACATTACCATAGCGAAAAGATTGCAACTGCCTTAGGCTTAATCAGTACAGCCCCTCGAACCAGTCTTCGAATTTTTAAGAACCTACGCATATGCGAAGATTGTCACTCTTCGATAAAGTTGATCTCGAAAATTTATAAATGCAAGATTGTTGTCAGGGATCGGAAGCGCTTCCACCACTTCGAAAATGGTTTATGCTCTTGCAAGGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

303

Amino Acids

34.21

Weight (kDa)

6.73

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	19 - 50	7.4e-06	PPR repeat
PPR_2	PF13041	22 - 69	5.8e-12	PPR repeat family
PPR	PF01535	24 - 54	4.8e-07	PPR repeat
DYW_deaminase	PF14432	210 - 302	4.7e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48910
fragaria_vesca	FvH4_2g19560 FvH4_2g19570
malus_domestica	MD05G1179700.v1.1 MD10G1169300.v1.1
prunus_persica	Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1
pyrus_communis	pycom05g16620 pycom10g14610
rosa_chinensis	RchiOBHm_Chr6g0285331
rosa_laevigata	RLG00000012653
rosa_multiflora	Rmu_sc0011958.1_g000003
rosa_roxburghii	Rroxscaffold_7G00183350
rosa_rugosa	Rorug06G0173600
rosa_samantha	Rh6AG284300 Rh6BG285100 Rh6DG279600
rosa_wichuraiana	Rw6G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AarI	CACCTGC	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	163
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	1 cut(s)	858
AcsI	RAATTY	3 cut(s)	603, 762, 822
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	739
AfeI	AGCGCT	1 cut(s)	860
AgsI	TTSAA	1 cut(s)	591
AleI	CACNNNNGTG	1 cut(s)	650
AluBI	AGCT	6 cut(s)	155, 338, 346, 513, 523, 621
AluI	AGCT	6 cut(s)	155, 338, 346, 513, 523, 621
AlwI	GGATC	1 cut(s)	858
Aor51HI	AGCGCT	1 cut(s)	860
AoxI	GGCC	3 cut(s)	390, 628, 635
ApoI	RAATTY	3 cut(s)	603, 762, 822
AseI	ATTAAT	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	861
AsuC2I	CCSGG	1 cut(s)	504
AsuII	TTCGAA	3 cut(s)	140, 760, 873
AxyI	CCTNAGG	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	561, 749
BccI	CCATC	4 cut(s)	139, 424, 521, 573
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BcnI	CCSGG	1 cut(s)	504
BfaI	CTAG	2 cut(s)	168, 276
BfoI	RGCGCY	1 cut(s)	862
BfuAI	ACCTGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	112, 402
BpiI	GAAGAC	2 cut(s)	561, 749
Bpu14I	TTCGAA	3 cut(s)	140, 760, 873
BpuEI	CTTGAG	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	504
Bse1I	ACTGG	3 cut(s)	132, 753, 908
Bse21I	CCTNAGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	70
BseGI	GGATG	3 cut(s)	243, 480, 673
BseMI	GCAATG	1 cut(s)	70
BseNI	ACTGG	3 cut(s)	132, 753, 908
BshFI	GGCC	3 cut(s)	392, 630, 637
BshNI	GGYRCC	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	321, 503, 576
BsmI	GAATGC	2 cut(s)	85, 236
BsnI	GGCC	3 cut(s)	392, 630, 637
Bsp119I	TTCGAA	3 cut(s)	140, 760, 873
Bsp143I	GATC	2 cut(s)	813, 850
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	3 cut(s)	392, 630, 637
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	858
BspQI	GCTCTTC	3 cut(s)	39, 226, 336
BspT104I	TTCGAA	3 cut(s)	140, 760, 873
BspT107I	GGYRCC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	132, 753, 908
BssMI	GATC	2 cut(s)	813, 850
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	4 cut(s)	39, 226, 336, 805
BstBI	TTCGAA	3 cut(s)	140, 760, 873
BstC8I	GCNNGC	2 cut(s)	99, 406
BstDEI	CTNAG	2 cut(s)	268, 724
BstF5I	GGATG	3 cut(s)	243, 480, 673
BstH2I	RGCGCY	1 cut(s)	862
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	2 cut(s)	816, 853
BstMBI	GATC	2 cut(s)	813, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 367, 627
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	502
BstV2I	GAAGAC	2 cut(s)	561, 749
Bsu36I	CCTNAGG	1 cut(s)	724
BsuRI	GGCC	3 cut(s)	392, 630, 637
BtsCI	GGATG	3 cut(s)	243, 480, 673
BtsIMutI	CAGTG	2 cut(s)	97, 125
BveI	ACCTGC	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	99, 406
CfoI	GCGC	1 cut(s)	861
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	738
CviAII	CATG	4 cut(s)	209, 358, 384, 664
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	2 cut(s)	268, 724
DpnI	GATC	2 cut(s)	815, 852
DpnII	GATC	2 cut(s)	813, 850
Eam1104I	CTCTTC	4 cut(s)	39, 226, 336, 805
EarI	CTCTTC	4 cut(s)	39, 226, 336, 805
Eco147I	AGGCCT	2 cut(s)	392, 637
Eco47III	AGCGCT	1 cut(s)	860
Eco57I	CTGAAG	1 cut(s)	360
Eco81I	CCTNAGG	1 cut(s)	724
FaeI	CATG	4 cut(s)	212, 361, 387, 667
FatI	CATG	4 cut(s)	208, 357, 383, 663
FauNDI	CATATG	2 cut(s)	249, 782
FokI	GGATG	3 cut(s)	230, 487, 680
FspBI	CTAG	2 cut(s)	168, 276
GlaI	GCGC	1 cut(s)	860
HaeII	RGCGCY	1 cut(s)	862
HaeIII	GGCC	3 cut(s)	392, 630, 637
HapII	CCGG	3 cut(s)	321, 503, 576
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	861
Hin1II	CATG	4 cut(s)	212, 361, 387, 667
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HinfI	GANTC	1 cut(s)	560
HpaII	CCGG	3 cut(s)	321, 503, 576
Hpy188I	TCNGA	2 cut(s)	610, 855
Hpy188III	TCNNGA	3 cut(s)	193, 427, 817
HpyAV	CCTTC	3 cut(s)	220, 382, 620
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	9 cut(s)	106, 125, 408, 415, 458, 689, 716, 834, 894
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 367, 627
HpyF3I	CTNAG	2 cut(s)	268, 724
Hsp92II	CATG	4 cut(s)	212, 361, 387, 667
HspAI	GCGC	1 cut(s)	859
Kzo9I	GATC	2 cut(s)	813, 850
LguI	GCTCTTC	3 cut(s)	39, 226, 336
LmnI	GCTCC	2 cut(s)	18, 530
LweI	GCATC	2 cut(s)	112, 402
MaeI	CTAG	2 cut(s)	168, 276
MaeIII	GTNAC	3 cut(s)	175, 379, 794
MalI	GATC	2 cut(s)	815, 852
MboI	GATC	2 cut(s)	813, 850
MluCI	AATT	8 cut(s)	261, 363, 442, 534, 603, 614, 762, 822
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	5 cut(s)	19, 442, 500, 592, 756
MroXI	GAANNNNTTC	1 cut(s)	860
MseI	TTAA	6 cut(s)	45, 57, 255, 353, 731, 768
MslI	CAYNNNNRTG	3 cut(s)	248, 428, 650
MspI	CCGG	3 cut(s)	321, 503, 576
MspR9I	CCNGG	1 cut(s)	504
Mva1269I	GAATGC	2 cut(s)	85, 236
MwoI	GCNNNNNNNGC	3 cut(s)	103, 367, 627
NciI	CCSGG	1 cut(s)	504
NdeI	CATATG	2 cut(s)	249, 782
NdeII	GATC	2 cut(s)	813, 850
NlaIII	CATG	4 cut(s)	212, 361, 387, 667
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	379, 794
NspI	RCATGY	1 cut(s)	361
NspV	TTCGAA	3 cut(s)	140, 760, 873
OliI	CACNNNNGTG	1 cut(s)	650
PaqCI	CACCTGC	1 cut(s)	60
PceI	AGGCCT	2 cut(s)	392, 637
PciSI	GCTCTTC	3 cut(s)	39, 226, 336
PctI	GAATGC	2 cut(s)	85, 236
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	1 cut(s)	560
PshBI	ATTAAT	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	828
PspN4I	GGNNCC	1 cut(s)	165
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
RseI	CAYNNNNRTG	3 cut(s)	248, 428, 650
SapI	GCTCTTC	3 cut(s)	39, 226, 336
SaqAI	TTAA	6 cut(s)	45, 57, 255, 353, 731, 768
Sau3AI	GATC	2 cut(s)	813, 850
ScrFI	CCNGG	1 cut(s)	504
SfaNI	GCATC	2 cut(s)	112, 402
SfuI	TTCGAA	3 cut(s)	140, 760, 873
SmiMI	CAYNNNNRTG	3 cut(s)	248, 428, 650
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	8 cut(s)	261, 363, 442, 534, 603, 614, 762, 822
SseBI	AGGCCT	2 cut(s)	392, 637
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	2 cut(s)	168, 276
StuI	AGGCCT	2 cut(s)	392, 637
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	9 cut(s)	37, 112, 140, 426, 748, 760, 803, 818, 873
TasI	AATT	8 cut(s)	261, 363, 442, 534, 603, 614, 762, 822
TatI	WGTACW	1 cut(s)	737
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	6 cut(s)	45, 57, 255, 353, 731, 768
Tru9I	TTAA	6 cut(s)	45, 57, 255, 353, 731, 768
TscAI	CASTG	2 cut(s)	97, 132
TseFI	GTSAC	2 cut(s)	379, 794
Tsp45I	GTSAC	2 cut(s)	379, 794
TspDTI	ATGAA	3 cut(s)	232, 491, 684
TspRI	CASTG	2 cut(s)	97, 132
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	3 cut(s)	603, 762, 822
XceI	RCATGY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	875
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	2 cut(s)	168, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.