Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013442

Physical Location & Seq

Genomic Coordinates Reverse (-)

6631515 .. 6632504

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G095600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTATTCTAAGTGTGGGAGCATTGAGAAGGCACTTCTAGTTTTTGAGAAACTGCCTAAAAGGAATGTGATTACTTGGAATGCCATAATTAGTGGACTTGCTATGCATGGTCGAGTGGAAGATGCTCTAGATTATTTTAAAAAGATGGAACCGGCTGGTGTGGTGCCTAGTGATGTAACATATATTGGTATCTTGAGTGCTTGTAGCCATGCAGGTTTGGTGGAGCAGGGCAGATCATTCTTCAACCGCATGGTTAATGTAATTAGCTTAGAACCTAGAATTGAGCATTATGGGTGTATGGTTGATCTGTTAGGTCGTGCTGGACTGTTAGAAGAAGCTGAAGAGCTTATACTAAACATGCCAATTCAGCCGGATGATGTTACATGGAAGGCATTGCTCGGAGCTTGCAAGAAGCAAGGGAACATCGACATGGGCAAACGAGTGGCAGAGGTTTTGATGGACTTGGCTCCTCATGACAGTGGATCATACGTTGCTCTCTCAAACATGTATGCCTCTTTGGGAAATTGGGAGGCGGTTGCAAAGGTTAGATTGCAGATGAAGGATATGGACATTAGGAAAGACCCGGGAGGCAGTTCGATTGAGCTTGATGGAGTGATTCATGAGTTTGTGGTGGAAGACGAATCGCATCCCCGAGCCAGAGAAATCCATTCAATGTTAGAGGAAATCTCCAACCAGTTGAGCTTAGAAGGCCATAGGCCTGACACCACTCAAGTGTTGCTCAACATGGATGAAGAAGAAAAACAAAGTGTTTTGCATTATCACAGTGAGAAGATTGCAACTGCCTTTGGCTTAATCAGTACAGCCCCTCAAACCCCTCTTCGAATTGTTAAGAACCTGCGCATATGTGAAGATTGTCACTCTTCTCTAAAGTTGATTTCAAAAATTTATGAACGCATGATTATCGTCCGCGACCGCAAGCGCTTCCACCACTTCGAGCAGGGGTTATGCTCTTGCATGGACTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

330

Amino Acids

37.13

Weight (kDa)

5.74

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48910
fragaria_vesca	FvH4_2g19560 FvH4_2g19570
malus_domestica	MD05G1179700.v1.1 MD10G1169300.v1.1
prunus_persica	Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1
pyrus_communis	pycom05g16620 pycom10g14610
rosa_chinensis	RchiOBHm_Chr6g0285331
rosa_laevigata	RLG00000012653
rosa_multiflora	Rmu_sc0011958.1_g000003
rosa_roxburghii	Rroxscaffold_7G00183350
rosa_rugosa	Rorug06G0173600
rosa_samantha	Rh6AG284300 Rh6BG285100 Rh6DG279600
rosa_wichuraiana	Rw6G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	860
Acc36I	ACCTGC	2 cut(s)	203, 864
AccB1I	GGYRCC	1 cut(s)	163
AccII	CGCG	1 cut(s)	930
AciI	CCGC	4 cut(s)	247, 533, 928, 934
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	903
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	820
AfeI	AGCGCT	1 cut(s)	941
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	3 cut(s)	244, 672, 900
AleI	CACNNNNGTG	1 cut(s)	731
AluBI	AGCT	6 cut(s)	267, 338, 346, 404, 604, 702
AluI	AGCT	6 cut(s)	267, 338, 346, 404, 604, 702
AlwI	GGATC	1 cut(s)	490
Ama87I	CYCGRG	2 cut(s)	583, 651
Aor51HI	AGCGCT	1 cut(s)	941
AoxI	GGCC	2 cut(s)	709, 716
ApoI	RAATTY	1 cut(s)	903
AspLEI	GCGC	2 cut(s)	861, 942
AsuC2I	CCSGG	2 cut(s)	584, 585
AsuII	TTCGAA	1 cut(s)	841
AvaI	CYCGRG	2 cut(s)	583, 651
BanI	GGYRCC	1 cut(s)	163
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbsI	GAAGAC	1 cut(s)	642
BccI	CCATC	3 cut(s)	139, 451, 602
BcgI	CGANNNNNNTGC	2 cut(s)	904, 938
BcnI	CCSGG	2 cut(s)	584, 585
BfaI	CTAG	4 cut(s)	38, 128, 168, 276
BfoI	RGCGCY	1 cut(s)	943
BfuAI	ACCTGC	2 cut(s)	203, 864
Bme1390I	CCNGG	2 cut(s)	584, 585
BmeT110I	CYCGRG	2 cut(s)	583, 651
BmiI	GGNNCC	3 cut(s)	150, 165, 468
BmrFI	CCNGG	2 cut(s)	584, 585
BmsI	GCATC	2 cut(s)	112, 655
BpiI	GAAGAC	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
Bpu14I	TTCGAA	1 cut(s)	841
BpuEI	CTTGAG	2 cut(s)	214, 714
BpuMI	CCSGG	2 cut(s)	584, 585
BsaJI	CCNNGG	1 cut(s)	583
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	694, 989
Bse3DI	GCAATG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	3 cut(s)	379, 646, 754
BseMI	GCAATG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	694, 989
BseRI	GAGGAG	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	930
Bsh1285I	CGRYCG	1 cut(s)	934
BshFI	GGCC	2 cut(s)	711, 718
BshNI	GGYRCC	1 cut(s)	163
BsiEI	CGRYCG	1 cut(s)	934
BsiHKCI	CYCGRG	2 cut(s)	583, 651
BsiSI	CCGG	3 cut(s)	152, 371, 584
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	711, 718
BsoBI	CYCGRG	2 cut(s)	583, 651
Bsp119I	TTCGAA	1 cut(s)	841
Bsp143I	GATC	3 cut(s)	233, 304, 482
BspACI	CCGC	4 cut(s)	247, 533, 928, 934
BspANI	GGCC	2 cut(s)	711, 718
BspFNI	CGCG	1 cut(s)	930
BspHI	TCATGA	2 cut(s)	472, 619
BspLI	GGNNCC	3 cut(s)	150, 165, 468
BspMI	ACCTGC	2 cut(s)	203, 864
BspPI	GGATC	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	841
BspT107I	GGYRCC	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	694, 989
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	3 cut(s)	233, 304, 482
Bst4CI	ACNGT	3 cut(s)	327, 479, 785
Bst6I	CTCTTC	3 cut(s)	336, 843, 886
BstBI	TTCGAA	1 cut(s)	841
BstC8I	GCNNGC	2 cut(s)	406, 938
BstDEI	CTNAG	3 cut(s)	9, 268, 703
BstF5I	GGATG	3 cut(s)	379, 646, 754
BstFNI	CGCG	1 cut(s)	930
BstH2I	RGCGCY	1 cut(s)	943
BstHHI	GCGC	2 cut(s)	861, 942
BstKTI	GATC	3 cut(s)	236, 307, 485
BstMBI	GATC	3 cut(s)	233, 304, 482
BstMCI	CGRYCG	1 cut(s)	934
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 708
BstNSI	RCATGY	2 cut(s)	361, 508
BstSCI	CCNGG	2 cut(s)	582, 583
BstUI	CGCG	1 cut(s)	930
BstV2I	GAAGAC	1 cut(s)	642
BsuRI	GGCC	2 cut(s)	711, 718
BtsCI	GGATG	3 cut(s)	379, 646, 754
BtsIMutI	CAGTG	2 cut(s)	484, 790
BveI	ACCTGC	2 cut(s)	203, 864
Cac8I	GCNNGC	2 cut(s)	406, 938
CciI	TCATGA	2 cut(s)	472, 619
CfoI	GCGC	2 cut(s)	861, 942
Cfr10I	RCCGGY	1 cut(s)	151
Cfr9I	CCCGGG	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	819
CviQI	GTAC	1 cut(s)	819
DdeI	CTNAG	3 cut(s)	9, 268, 703
DpnI	GATC	3 cut(s)	235, 306, 484
DpnII	GATC	3 cut(s)	233, 304, 482
DraI	TTTAAA	1 cut(s)	139
Eam1104I	CTCTTC	3 cut(s)	336, 843, 886
EarI	CTCTTC	3 cut(s)	336, 843, 886
Eco147I	AGGCCT	1 cut(s)	718
Eco47III	AGCGCT	1 cut(s)	941
Eco57I	CTGAAG	1 cut(s)	360
Eco88I	CYCGRG	2 cut(s)	583, 651
EcoT22I	ATGCAT	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	863
FokI	GGATG	3 cut(s)	386, 633, 761
FspBI	CTAG	4 cut(s)	38, 128, 168, 276
FspI	TGCGCA	1 cut(s)	860
GlaI	GCGC	2 cut(s)	860, 941
HaeII	RGCGCY	1 cut(s)	943
HaeIII	GGCC	2 cut(s)	711, 718
HapII	CCGG	3 cut(s)	152, 371, 584
HhaI	GCGC	2 cut(s)	861, 942
Hin6I	GCGC	2 cut(s)	859, 940
HinP1I	GCGC	2 cut(s)	859, 940
HinfI	GANTC	2 cut(s)	616, 641
HpaII	CCGG	3 cut(s)	152, 371, 584
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	401
Hpy188III	TCNNGA	4 cut(s)	128, 193, 473, 620
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	22, 382, 553, 701
HpyCH4III	ACNGT	3 cut(s)	327, 479, 785
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	8 cut(s)	106, 212, 408, 539, 553, 775, 797, 975
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 708
HpyF3I	CTNAG	3 cut(s)	9, 268, 703
HpySE526I	ACGT	1 cut(s)	489
HspAI	GCGC	2 cut(s)	859, 940
Kzo9I	GATC	3 cut(s)	233, 304, 482
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	4 cut(s)	18, 223, 401, 472
LweI	GCATC	2 cut(s)	112, 655
MaeI	CTAG	4 cut(s)	38, 128, 168, 276
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	3 cut(s)	175, 379, 875
MalI	GATC	3 cut(s)	235, 306, 484
MboI	GATC	3 cut(s)	233, 304, 482
MluCI	AATT	7 cut(s)	87, 261, 279, 363, 523, 843, 903
MmeI	TCCRAC	1 cut(s)	714
MnlI	CCTC	8 cut(s)	442, 480, 523, 523, 581, 673, 837, 846
Mph1103I	ATGCAT	1 cut(s)	108
MseI	TTAA	4 cut(s)	138, 255, 812, 849
MslI	CAYNNNNRTG	3 cut(s)	428, 477, 731
MspI	CCGG	3 cut(s)	152, 371, 584
MspR9I	CCNGG	2 cut(s)	584, 585
Mva1269I	GAATGC	1 cut(s)	85
MvnI	CGCG	1 cut(s)	930
MwoI	GCNNNNNNNGC	2 cut(s)	367, 708
NciI	CCSGG	2 cut(s)	584, 585
NdeI	CATATG	1 cut(s)	863
NdeII	GATC	3 cut(s)	233, 304, 482
NlaIV	GGNNCC	3 cut(s)	150, 165, 468
NmuCI	GTSAC	1 cut(s)	875
NsbI	TGCGCA	1 cut(s)	860
NsiI	ATGCAT	1 cut(s)	108
NspI	RCATGY	2 cut(s)	361, 508
NspV	TTCGAA	1 cut(s)	841
OliI	CACNNNNGTG	1 cut(s)	731
PagI	TCATGA	2 cut(s)	472, 619
PceI	AGGCCT	1 cut(s)	718
PciI	ACATGT	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	336
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	616, 641
PscI	ACATGT	1 cut(s)	504
PspN4I	GGNNCC	3 cut(s)	150, 165, 468
RsaI	GTAC	1 cut(s)	820
RsaNI	GTAC	1 cut(s)	819
RseI	CAYNNNNRTG	3 cut(s)	428, 477, 731
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	4 cut(s)	138, 255, 812, 849
Sau3AI	GATC	3 cut(s)	233, 304, 482
ScrFI	CCNGG	2 cut(s)	584, 585
SfaNI	GCATC	2 cut(s)	112, 655
SfuI	TTCGAA	1 cut(s)	841
SmaI	CCCGGG	1 cut(s)	585
SmiMI	CAYNNNNRTG	3 cut(s)	428, 477, 731
SmlI	CTYRAG	2 cut(s)	193, 729
SmoI	CTYRAG	2 cut(s)	193, 729
Sse9I	AATT	7 cut(s)	87, 261, 279, 363, 523, 843, 903
SseBI	AGGCCT	1 cut(s)	718
SsiI	CCGC	4 cut(s)	247, 533, 928, 934
SspMI	CTAG	4 cut(s)	38, 128, 168, 276
StuI	AGGCCT	1 cut(s)	718
StyD4I	CCNGG	2 cut(s)	582, 583
TaaI	ACNGT	3 cut(s)	327, 479, 785
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	5 cut(s)	112, 426, 596, 841, 954
TasI	AATT	7 cut(s)	87, 261, 279, 363, 523, 843, 903
TatI	WGTACW	1 cut(s)	818
TfiI	GAWTC	2 cut(s)	616, 641
Tru1I	TTAA	4 cut(s)	138, 255, 812, 849
Tru9I	TTAA	4 cut(s)	138, 255, 812, 849
TscAI	CASTG	2 cut(s)	484, 790
TseFI	GTSAC	1 cut(s)	875
Tsp45I	GTSAC	1 cut(s)	875
TspDTI	ATGAA	4 cut(s)	572, 608, 765, 924
TspMI	CCCGGG	1 cut(s)	583
TspRI	CASTG	2 cut(s)	484, 790
XapI	RAATTY	1 cut(s)	903
XbaI	TCTAGA	1 cut(s)	127
XceI	RCATGY	2 cut(s)	361, 508
XmaI	CCCGGG	1 cut(s)	583
XspI	CTAG	4 cut(s)	38, 128, 168, 276
Zsp2I	ATGCAT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.