Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013442

Physical Location & Seq

Genomic Coordinates Forward (+)

25587425 .. 25589806

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0173600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGGACTTCCATAACCATTTCAACACCACCAACAGAGCGGAAGCGGAGCGGTGGCTGAGCACCGCCGTGAAGCTACTGACGACACGTGACCTGCACGGTACCAAGAGCTTCGCGATCCGTGCCCGAGAGTCCGACCCGAGGCTGGGCGCCACCGACCAACTAATCGCCGTGGCCGACACGCTCCTCGCCGGAGAGTCACGGATCAACAACCAGCCCGACTGGTACGCGATTCTTCAACTGGCCCACCGCACTCACAGCCTTGAGCTCGTGGCGACTCAGTACCGTCGCCTCGCCCTTCTCCTCAACCCTCAGGCCAATCGGTTTCCTTACGCCGATCAGGCCTTCCGTCTCGTCTCCGACGCCTGGACCGTGCTCTCAAACCCCTCCAAGAAGGCCCTCTACGACCACGACTTGAATATCTACTCCCGGTTCGACTCGCCTCCGCCCTCCTCCGGGTCAACTCAGTTGTTTGAAAGGCAGTTCTTGCAAATGCATGCACCACCGCCACCGCAACAACCATTTCAACAGCGGCTGCAGCCACTTCAGCGGCCGCAGCAGCTGCAGGCTCAACCGTTTCCGCACCAATTACAACCGCAACCACTTCAGCAGAGACCACAACCGCCACCTCAGGCACAAGAAAAGAGACAGCCACCACCGCCGCCGCAAAATCAACAATCACCACAGAAGCAGCAGCAGCCAGTGAGAAAAAGCCCAAGGAAGAAGGACGGAAGAGCGGCCGGTGAGGAAGAAACGCCGAATCCTAACAATGTGGCTAACAATGTGACTGAGTTTGAGCCAGAGTCAGCTGCCCCTCTCCCATCTGAGTCGCTTAGTACAACTCAGGTGCAAGCGGAGTCTGATTCCGGGAATTTCTGGACGGCATGCCCCTACTGTTATCACCTCTTTGAGTACTCGAGAGTTTATGAGGAGTGTATGCTTCGGTGTCAAAACTGTAAGAGGGCTTTCCATGCTGTGGTGATATCGACACCGCCTGTGATGGACAATGGGGAAGCAAATTTCTGCTGCTGGGCCTATTTCCCAATGGGGTTATCAGGGAGTGTTAAAGATACAGGAGGGTCATCTAACTGGACTCCCTTTTCAACTATGTTTGCTTGCCCTTTACCGGGTACTACGAAGAAAGTTGGGAGACCTAAGAACGCTGCTATGGGGTCAAGGGTTTACTACGACGATGATGACGCCTTTCTTGACATTTCCGATCCCAGTGAGGAATCCGATGATGAGTGGCAGAAGGATAAGAGGAGGAAGAAGAGAGCAGGAAGACCAAAAGGAAAAGCTTCCACTTCTAGAACCCCTGCAAGAGCTTCAGAGAGATTAAGGAAGGTGACTCAAAATGTTGGTGGGCAGGGCATGGTGAGTAATGGTGGGACACTGGGTGCTGTGTCTGCATCCAATGGGGAATCCAGTAAGAAGACAAGTGCTAGTGCAAGAAAGCGAGGTGCTGCTACGTTGGGAAAATTGGATTTGAATGTGGAGTTTAGTAATAATGAGGTAGAGGAGCATGCTGCTCAGACAATGAGTGATGGGAACGGGACAGCAAATGGGGAGGAGGATAATATTGAAGGGATTGAGTTCTTCGAAGGTCTTGATGAGTTCTTGAGCAGTCTGCCCATACTCAATGTTGTTGGCAATGACAAGGTAAAGGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

556

Amino Acids

61.79

Weight (kDa)

7.16

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	73 - 135	1.3e-11	DnaJ domain
Zn_ribbon_20	PF23551	291 - 325	2.2e-07	Zinc beta-ribbon domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48910
fragaria_vesca	FvH4_2g19560 FvH4_2g19570
malus_domestica	MD05G1179700.v1.1 MD10G1169300.v1.1
prunus_persica	Prupe.6G095600_v2.0.a1 Prupe.8G207000_v2.0.a1
pyrus_communis	pycom05g16620 pycom10g14610
rosa_chinensis	RchiOBHm_Chr6g0285331
rosa_laevigata	RLG00000012653
rosa_multiflora	Rmu_sc0011958.1_g000003
rosa_roxburghii	Rroxscaffold_7G00183350
rosa_rugosa	Rorug06G0173600
rosa_samantha	Rh6AG284300 Rh6BG285100 Rh6DG279600
rosa_wichuraiana	Rw6G024470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	99
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	2 cut(s)	98, 146
AccB7I	CCANNNNNTGG	1 cut(s)	973
AccBSI	CCGCTC	3 cut(s)	38, 49, 734
AccII	CGCG	2 cut(s)	113, 227
AclWI	GGATC	3 cut(s)	109, 209, 1211
AcoI	YGGCCR	3 cut(s)	171, 548, 735
AcsI	RAATTY	2 cut(s)	868, 1015
AcuI	CTGAAG	3 cut(s)	527, 587, 1308
AcvI	CACGTG	1 cut(s)	86
AcyI	GRCGYC	3 cut(s)	147, 360, 1197
AdeI	CACNNNGTG	1 cut(s)	1394
AfaI	GTAC	6 cut(s)	100, 224, 281, 835, 911, 1129
AfiI	CCNNNNNNNGG	9 cut(s)	138, 142, 143, 363, 452, 453, 973, 1123, 1124
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	8 cut(s)	22, 236, 415, 473, 524, 1101, 1486, 1580
AjnI	CCWGG	1 cut(s)	362
AleI	CACNNNNGTG	1 cut(s)	65
AluBI	AGCT	7 cut(s)	73, 108, 265, 559, 806, 1295, 1322
AluI	AGCT	7 cut(s)	73, 108, 265, 559, 806, 1295, 1322
Alw21I	GWGCWC	3 cut(s)	62, 267, 375
Alw26I	GTCTC	5 cut(s)	353, 358, 604, 637, 1141
AlwI	GGATC	3 cut(s)	109, 209, 1211
AlwNI	CAGNNNCTG	2 cut(s)	532, 559
Ama87I	CYCGRG	3 cut(s)	123, 136, 913
AoxI	GGCC	8 cut(s)	171, 240, 312, 339, 393, 548, 735, 1029
ApoI	RAATTY	2 cut(s)	868, 1015
Asp700I	GAANNNNTTC	1 cut(s)	1294
Asp718I	GGTACC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	4 cut(s)	241, 366, 394, 1029
AsuC2I	CCSGG	4 cut(s)	427, 454, 865, 1125
AsuHPI	GGTGA	6 cut(s)	669, 752, 890, 988, 1354, 1384
AsuII	TTCGAA	1 cut(s)	1596
AvaI	CYCGRG	3 cut(s)	123, 136, 913
AvaII	GGWCC	1 cut(s)	366
AxyI	CCTNAGG	2 cut(s)	309, 627
BaeGI	GKGCMC	1 cut(s)	124
BanI	GGYRCC	2 cut(s)	98, 146
BanII	GRGCYC	1 cut(s)	267
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BauI	CACGAG	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	2 cut(s)	1285, 1436
Bbv12I	GWGCWC	3 cut(s)	62, 267, 375
BccI	CCATC	3 cut(s)	826, 991, 1535
BceAI	ACGGC	3 cut(s)	50, 152, 894
BciT130I	CCWGG	1 cut(s)	364
BcnI	CCSGG	4 cut(s)	427, 454, 865, 1125
BcoDI	GTCTC	5 cut(s)	353, 358, 604, 637, 1141
BfaI	CTAG	2 cut(s)	1305, 1440
BfmI	CTRYAG	2 cut(s)	533, 560
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	338
BlpI	GCTNAGC	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	911
Bme1390I	CCNGG	5 cut(s)	364, 427, 454, 865, 1125
Bme18I	GGWCC	1 cut(s)	366
BmeT110I	CYCGRG	3 cut(s)	123, 136, 913
BmgT120I	GGNCC	4 cut(s)	241, 366, 394, 1029
BmiI	GGNNCC	2 cut(s)	100, 148
BmrFI	CCNGG	5 cut(s)	364, 427, 454, 865, 1125
BmrI	ACTGGG	2 cut(s)	1215, 1400
BmsI	GCATC	1 cut(s)	1415
BmuI	ACTGGG	2 cut(s)	1215, 1400
BpiI	GAAGAC	2 cut(s)	1285, 1436
Bpu1102I	GCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	1596
BpuEI	CTTGAG	2 cut(s)	281, 1636
BpuMI	CCSGG	4 cut(s)	427, 454, 865, 1125
BsaAI	YACGTR	1 cut(s)	86
BsaHI	GRCGYC	3 cut(s)	147, 360, 1197
BsaI	GGTCTC	2 cut(s)	604, 1141
BsaJI	CCNNGG	3 cut(s)	137, 168, 713
Bsc4I	CCNNNNNNNGG	9 cut(s)	138, 142, 143, 363, 452, 453, 973, 1123, 1124
Bse118I	RCCGGY	1 cut(s)	737
Bse1I	ACTGG	7 cut(s)	224, 243, 698, 1091, 1221, 1395, 1422
Bse21I	CCTNAGG	2 cut(s)	309, 627
Bse3DI	GCAATG	1 cut(s)	1654
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	3 cut(s)	137, 168, 713
BseGI	GGATG	1 cut(s)	1406
BseLI	CCNNNNNNNGG	9 cut(s)	138, 142, 143, 363, 452, 453, 973, 1123, 1124
BseMI	GCAATG	1 cut(s)	1654
BseMII	CTCAG	9 cut(s)	47, 290, 323, 476, 641, 777, 813, 854, 1541
BseNI	ACTGG	7 cut(s)	224, 243, 698, 1091, 1221, 1395, 1422
BseRI	GAGGAG	7 cut(s)	173, 290, 439, 941, 1273, 1529, 1580
BseSI	GKGCMC	1 cut(s)	124
BseX3I	CGGCCG	2 cut(s)	548, 735
BseYI	CCCAGC	2 cut(s)	142, 1026
BsgI	GTGCAG	1 cut(s)	77
Bsh1236I	CGCG	2 cut(s)	113, 227
Bsh1285I	CGRYCG	2 cut(s)	551, 738
BshFI	GGCC	8 cut(s)	173, 242, 314, 341, 395, 550, 737, 1031
BshNI	GGYRCC	2 cut(s)	98, 146
BsiEI	CGRYCG	2 cut(s)	551, 738
BsiHKAI	GWGCWC	3 cut(s)	62, 267, 375
BsiHKCI	CYCGRG	3 cut(s)	123, 136, 913
BsiSI	CCGG	6 cut(s)	189, 427, 453, 738, 864, 1124
BslFI	GGGAC	2 cut(s)	1399, 1564
BslI	CCNNNNNNNGG	9 cut(s)	138, 142, 143, 363, 452, 453, 973, 1123, 1124
BsmAI	GTCTC	5 cut(s)	353, 358, 604, 637, 1141
BsmBI	CGTCTC	2 cut(s)	353, 358
BsmFI	GGGAC	2 cut(s)	1399, 1564
BsnI	GGCC	8 cut(s)	173, 242, 314, 341, 395, 550, 737, 1031
Bso31I	GGTCTC	2 cut(s)	604, 1141
BsoBI	CYCGRG	3 cut(s)	123, 136, 913
Bsp119I	TTCGAA	1 cut(s)	1596
Bsp1286I	GDGCHC	4 cut(s)	62, 124, 267, 375
Bsp143I	GATC	4 cut(s)	114, 201, 334, 1216
Bsp1720I	GCTNAGC	1 cut(s)	56
Bsp68I	TCGCGA	1 cut(s)	113
BspANI	GGCC	8 cut(s)	173, 242, 314, 341, 395, 550, 737, 1031
BspCNI	CTCAG	9 cut(s)	48, 289, 322, 475, 640, 778, 814, 853, 1540
BspFNI	CGCG	2 cut(s)	113, 227
BspLI	GGNNCC	2 cut(s)	100, 148
BspMAI	CTGCAG	2 cut(s)	537, 564
BspMI	ACCTGC	1 cut(s)	99
BspPI	GGATC	3 cut(s)	109, 209, 1211
BspQI	GCTCTTC	1 cut(s)	724
BspT104I	TTCGAA	1 cut(s)	1596
BspT107I	GGYRCC	2 cut(s)	98, 146
BspTNI	GGTCTC	2 cut(s)	604, 1141
BsrBI	CCGCTC	3 cut(s)	38, 49, 734
BsrDI	GCAATG	1 cut(s)	1654
BsrFI	RCCGGY	1 cut(s)	737
BsrI	ACTGG	7 cut(s)	224, 243, 698, 1091, 1221, 1395, 1422
BssAI	RCCGGY	1 cut(s)	737
BssECI	CCNNGG	3 cut(s)	137, 168, 713
BssMI	GATC	4 cut(s)	114, 201, 334, 1216
BssNI	GRCGYC	3 cut(s)	147, 360, 1197
BssSI	CACGAG	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	713
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	6 cut(s)	98, 284, 370, 573, 893, 953
Bst6I	CTCTTC	2 cut(s)	724, 1262
BstACI	GRCGYC	3 cut(s)	147, 360, 1197
BstAPI	GCANNNNNTGC	2 cut(s)	484, 559
BstBAI	YACGTR	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	1596
BstC8I	GCNNGC	6 cut(s)	495, 564, 849, 883, 1114, 1521
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	1406
BstFNI	CGCG	2 cut(s)	113, 227
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	4 cut(s)	117, 204, 337, 1219
BstMAI	GTCTC	5 cut(s)	353, 358, 604, 637, 1141
BstMBI	GATC	4 cut(s)	114, 201, 334, 1216
BstMCI	CGRYCG	2 cut(s)	551, 738
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	3 cut(s)	497, 885, 1523
BstSCI	CCNGG	5 cut(s)	362, 425, 452, 863, 1123
BstSFI	CTRYAG	2 cut(s)	533, 560
BstSLI	GKGCMC	1 cut(s)	124
BstUI	CGCG	2 cut(s)	113, 227
BstV2I	GAAGAC	2 cut(s)	1285, 1436
BstZI	CGGCCG	2 cut(s)	548, 735
Bsu36I	CCTNAGG	2 cut(s)	309, 627
BsuRI	GGCC	8 cut(s)	173, 242, 314, 341, 395, 550, 737, 1031
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	1406
BtsIMutI	CAGTG	3 cut(s)	705, 1228, 1388
BtuMI	TCGCGA	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	6 cut(s)	495, 564, 849, 883, 1114, 1521
CaiI	CAGNNNCTG	2 cut(s)	532, 559
CciNI	GCGGCCGC	1 cut(s)	548
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	737
Cfr13I	GGNCC	4 cut(s)	241, 366, 394, 1029
CseI	GACGC	2 cut(s)	368, 1205
Csp6I	GTAC	6 cut(s)	99, 223, 280, 834, 910, 1128
CviAII	CATG	5 cut(s)	494, 882, 968, 1369, 1520
CviQI	GTAC	6 cut(s)	99, 223, 280, 834, 910, 1128
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	4 cut(s)	116, 203, 336, 1218
DpnII	GATC	4 cut(s)	114, 201, 334, 1216
DraIII	CACNNNGTG	1 cut(s)	1394
EaeI	YGGCCR	3 cut(s)	171, 548, 735
EagI	CGGCCG	2 cut(s)	548, 735
Eam1104I	CTCTTC	2 cut(s)	724, 1262
EarI	CTCTTC	2 cut(s)	724, 1262
EciI	GGCGGA	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	265
EclXI	CGGCCG	2 cut(s)	548, 735
Eco130I	CCWWGG	1 cut(s)	713
Eco147I	AGGCCT	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	2 cut(s)	604, 1141
Eco32I	GATATC	1 cut(s)	981
Eco47I	GGWCC	1 cut(s)	366
Eco52I	CGGCCG	2 cut(s)	548, 735
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	3 cut(s)	527, 587, 1308
Eco72I	CACGTG	1 cut(s)	86
Eco81I	CCTNAGG	2 cut(s)	309, 627
Eco88I	CYCGRG	3 cut(s)	123, 136, 913
EcoICRI	GAGCTC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	981
EcoT14I	CCWWGG	1 cut(s)	713
EcoT22I	ATGCAT	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	713
Esp3I	CGTCTC	2 cut(s)	353, 358
FaeI	CATG	5 cut(s)	497, 885, 971, 1372, 1523
FaqI	GGGAC	2 cut(s)	1399, 1564
FatI	CATG	5 cut(s)	493, 881, 967, 1368, 1519
FokI	GGATG	1 cut(s)	1393
FriOI	GRGCYC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	1305, 1440
GlaI	GCGC	1 cut(s)	148
GsaI	CCCAGC	2 cut(s)	146, 1030
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	8 cut(s)	173, 242, 314, 341, 395, 550, 737, 1031
HapII	CCGG	6 cut(s)	189, 427, 453, 738, 864, 1124
HgaI	GACGC	2 cut(s)	368, 1205
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	3 cut(s)	147, 360, 1197
Hin1II	CATG	5 cut(s)	497, 885, 971, 1372, 1523
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	1293
HpaII	CCGG	6 cut(s)	189, 427, 453, 738, 864, 1124
HphI	GGTGA	6 cut(s)	669, 752, 890, 988, 1354, 1384
Hpy166II	GTNNAC	2 cut(s)	459, 1180
Hpy188I	TCNGA	8 cut(s)	133, 358, 823, 859, 1216, 1234, 1327, 1530
Hpy188III	TCNNGA	7 cut(s)	112, 874, 915, 1205, 1305, 1604, 1615
Hpy8I	GTNNAC	2 cut(s)	459, 1180
Hpy99I	CGWCG	3 cut(s)	288, 362, 1190
HpyAV	CCTTC	8 cut(s)	305, 352, 385, 715, 1243, 1333, 1574, 1592
HpyCH4III	ACNGT	6 cut(s)	98, 284, 370, 573, 893, 953
HpyCH4IV	ACGT	2 cut(s)	85, 1466
HpySE526I	ACGT	2 cut(s)	85, 1466
Hsp92I	GRCGYC	3 cut(s)	147, 360, 1197
Hsp92II	CATG	5 cut(s)	497, 885, 971, 1372, 1523
HspAI	GCGC	1 cut(s)	147
KasI	GGCGCC	1 cut(s)	146
KpnI	GGTACC	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	114, 201, 334, 1216
LguI	GCTCTTC	1 cut(s)	724
LmnI	GCTCC	3 cut(s)	46, 186, 1516
LweI	GCATC	1 cut(s)	1415
MaeI	CTAG	2 cut(s)	1305, 1440
MaeII	ACGT	2 cut(s)	85, 1466
MaeIII	GTNAC	4 cut(s)	86, 195, 781, 1342
MalI	GATC	4 cut(s)	116, 203, 336, 1218
MbiI	CCGCTC	3 cut(s)	38, 49, 734
MboI	GATC	4 cut(s)	114, 201, 334, 1216
MhlI	GDGCHC	4 cut(s)	62, 124, 267, 375
MluCI	AATT	5 cut(s)	584, 868, 1015, 1475, 1666
Mly113I	GGCGCC	1 cut(s)	147
MlyI	GAGTC	9 cut(s)	137, 203, 268, 428, 809, 833, 863, 1084, 1339
MmeI	TCCRAC	2 cut(s)	156, 381
Mph1103I	ATGCAT	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	1294
MseI	TTAA	2 cut(s)	1062, 1334
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	4 cut(s)	529, 547, 559, 806
MspI	CCGG	6 cut(s)	189, 427, 453, 738, 864, 1124
MspR9I	CCNGG	5 cut(s)	364, 427, 454, 865, 1125
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	2 cut(s)	113, 227
NarI	GGCGCC	1 cut(s)	147
NciI	CCSGG	4 cut(s)	427, 454, 865, 1125
NdeII	GATC	4 cut(s)	114, 201, 334, 1216
NlaIII	CATG	5 cut(s)	497, 885, 971, 1372, 1523
NlaIV	GGNNCC	2 cut(s)	100, 148
NmuCI	GTSAC	4 cut(s)	86, 195, 781, 1342
NotI	GCGGCCGC	1 cut(s)	548
NruI	TCGCGA	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	495
NspI	RCATGY	3 cut(s)	497, 885, 1523
NspV	TTCGAA	1 cut(s)	1596
OliI	CACNNNNGTG	1 cut(s)	65
PaeI	GCATGC	3 cut(s)	497, 885, 1523
PaeR7I	CTCGAG	1 cut(s)	913
PceI	AGGCCT	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 366
PdmI	GAANNNNTTC	1 cut(s)	1294
PfeI	GAWTC	5 cut(s)	229, 757, 860, 1229, 1418
PflMI	CCANNNNNTGG	1 cut(s)	973
PfoI	TCCNGGA	1 cut(s)	863
PleI	GAGTC	9 cut(s)	136, 202, 268, 428, 808, 832, 862, 1084, 1339
PluTI	GGCGCC	1 cut(s)	150
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	9 cut(s)	136, 202, 268, 428, 808, 832, 862, 1084, 1339
Ppu21I	YACGTR	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	362
PspCI	CACGTG	1 cut(s)	86
PspFI	CCCAGC	2 cut(s)	142, 1026
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	100, 148
PspPI	GGNCC	4 cut(s)	241, 366, 394, 1029
PstI	CTGCAG	2 cut(s)	537, 564
PstNI	CAGNNNCTG	2 cut(s)	532, 559
PvuII	CAGCTG	2 cut(s)	559, 806
RruI	TCGCGA	1 cut(s)	113
RsaI	GTAC	6 cut(s)	100, 224, 281, 835, 911, 1129
RsaNI	GTAC	6 cut(s)	99, 223, 280, 834, 910, 1128
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	724
SaqAI	TTAA	2 cut(s)	1062, 1334
Sau3AI	GATC	4 cut(s)	114, 201, 334, 1216
Sau96I	GGNCC	4 cut(s)	241, 366, 394, 1029
ScaI	AGTACT	1 cut(s)	911
SchI	GAGTC	9 cut(s)	137, 203, 268, 428, 809, 833, 863, 1084, 1339
ScrFI	CCNGG	5 cut(s)	364, 427, 454, 865, 1125
SduI	GDGCHC	4 cut(s)	62, 124, 267, 375
SfaNI	GCATC	1 cut(s)	1415
SfcI	CTRYAG	2 cut(s)	533, 560
SfoI	GGCGCC	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	913
SfuI	TTCGAA	1 cut(s)	1596
SinI	GGWCC	1 cut(s)	366
SlaI	CTCGAG	1 cut(s)	913
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	3 cut(s)	260, 913, 1615
SmoI	CTYRAG	3 cut(s)	260, 913, 1615
SphI	GCATGC	3 cut(s)	497, 885, 1523
Sse9I	AATT	5 cut(s)	584, 868, 1015, 1475, 1666
SseBI	AGGCCT	1 cut(s)	341
SspDI	GGCGCC	1 cut(s)	146
SspI	AATATT	1 cut(s)	1576
SspMI	CTAG	2 cut(s)	1305, 1440
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	5 cut(s)	362, 425, 452, 863, 1123
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	6 cut(s)	98, 284, 370, 573, 893, 953
TaiI	ACGT	2 cut(s)	88, 1469
TaqI	TCGA	4 cut(s)	432, 914, 983, 1596
TasI	AATT	5 cut(s)	584, 868, 1015, 1475, 1666
TatI	WGTACW	2 cut(s)	833, 909
TauI	GCSGC	6 cut(s)	532, 550, 553, 661, 664, 737
TfiI	GAWTC	5 cut(s)	229, 757, 860, 1229, 1418
Tru1I	TTAA	2 cut(s)	1062, 1334
Tru9I	TTAA	2 cut(s)	1062, 1334
TscAI	CASTG	3 cut(s)	705, 1228, 1395
TseFI	GTSAC	4 cut(s)	86, 195, 781, 1342
Tsp45I	GTSAC	4 cut(s)	86, 195, 781, 1342
TspGWI	ACGGA	4 cut(s)	107, 214, 335, 741
TspRI	CASTG	3 cut(s)	705, 1228, 1395
Van91I	CCANNNNNTGG	1 cut(s)	973
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	2 cut(s)	868, 1015
XbaI	TCTAGA	1 cut(s)	1304
XceI	RCATGY	3 cut(s)	497, 885, 1523
XhoI	CTCGAG	1 cut(s)	913
XmnI	GAANNNNTTC	1 cut(s)	1294
XspI	CTAG	2 cut(s)	1305, 1440
ZrmI	AGTACT	1 cut(s)	911
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.