FvH4_2g22240

pfkB family carbohydrate kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
18272432 .. 18275949
3518 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22240.t2

Sequence Viewer

Length: 1434 bp
ATGCACAGCGTAACTCTCAAATCCGCAATCCCCTACTACTACTACCATGTCCCCTCCTCCTCCTCCTCCCTCAACCCTAGACGACTCACCCAACCCCACCTCATTTTCCCGCCAAATCACCACCGCCCTTCCCTCACCTGCCTCTCCATCTCCGCCTCCTCCGCCGCCACCACCTCCGCCTCTCTCAACGGCTCCTCCTTCCACTCCCCGACCCTCGCCGTTAAACACATCGACGTCGCCACTCTCGGCAATCTCTGCGTCGACATCGTCCTCAACGTCCCCCAACTTCCGCCGCCCGACGCCGACCGCCGCAAAGCTTACATGGACCGCCTCTCCGCCTCGCCCCCCGACAAGAAATACTGGGAAGCTGGTGGCAACTGCAATGTGACTATAGCTGCTGCGAGGTTGGGGCTTCACTGCACTGCGATTGGCCATGTGGGAGATGAAATGTATGGGCAGTTCTTGTTGGATGTTCTTCGTGACGAAGGAATCGGTATGGTTGGGATGAATGAGGATAATGAGGCTGAAGCTTCAAGTGCTTCGTACGAGACGCTTTTGTGCTGGGTTCTTGTGGATCAGTTGCAAAGACATGGTTTTTGTAGTCGAGCTGATTTTAGTAAGGAGCCGGCTTTCAGTTGGTTAAGTAAATTATCCCTACAAGTGAAGACGGCGATAAAACAGTCAAAGATCCTGTTCTGTAATGGCTATGGCTTTGACGAGCTCTCTCCTGCTGTAATAGCTTCGGCTGTAGAGTATGCTGTTGAAGTCGGAACCGCAATTTTTTTCGACCCTGGACCCCGTGGAAAGAGCCTCTCTGCTGGTACGCATGAAGAGCAAGGAACACTTAACCTGTTGTTGAGGATGAGTGACGTTCTTCTTCTAACTTCAGATGAGGCTGAGTCATTGACTGGCATTAAAAACCCGATATTAGGAGGGAAGGAGTTGCTCAAGCAAGGGGTGCAAACAAAATGGGTGATTGTTAAAATGGGGCCAAAGGGTTCAATTCTTATAACTAAGTCTGGTATCTCTTGTGCACCAGCATTCAAGGTAAAGGTCATGGATACTGTTGGATGTGGAGATAGTTTCGTAGCTGCTATTGCATATGGTTTCATCCATGGTATGCCAATGGTAAATACACTGGCAATTGCAAATGCAGTGGGTGCTGCAACCGCCATGGGTTGTGGTGCTGGTAGGAATGTGGCGACATTGGATAAAGTAATTGAACTTGTGAAAGCTTCGGATCTTAATGAGGATGACAAGTTTTGGAATGAAGTATTTGATGAAAATTTGGGTGTTCAGGAAATTACTGCTATCTCAAAATTGGCCATTAATGGAAGTGACGGTCGGCTCAATTGTGTACCTTTGCAGAAGGTTGTAACAGAATTGCTTCCTAAGCTCAAATCTGCAGAGCTAGAGAGAAAAGTGCCGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

51.18

Weight (kDa)

6.19

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 122 - 178 5.4e-08 pfkB family carbohydrate kinase
PfkB PF00294 254 - 432 3.7e-25 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1010
AarI CACCTGC 1 cut(s) 146
AatII GACGTC 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 261
AclWI GGATC 3 cut(s) 582, 682, 1248
AcoI YGGCCR 2 cut(s) 430, 1323
AcsI RAATTY 1 cut(s) 1285
AcuI CTGAAG 2 cut(s) 546, 870
AcyI GRCGYC 2 cut(s) 234, 300
AfaI GTAC 3 cut(s) 545, 823, 1359
AfiI CCNNNNNNNGG 1 cut(s) 929
AgsI TTSAA 5 cut(s) 534, 764, 1002, 1045, 1223
AjnI CCWGG 1 cut(s) 790
Alw21I GWGCWC 2 cut(s) 723, 1036
Alw26I GTCTC 1 cut(s) 542
Alw44I GTGCAC 1 cut(s) 1032
AlwI GGATC 3 cut(s) 582, 682, 1248
AoxI GGCC 3 cut(s) 430, 989, 1323
ApaLI GTGCAC 1 cut(s) 1032
ApeKI GCWGC 4 cut(s) 395, 398, 1091, 1163
ApoI RAATTY 1 cut(s) 1285
ArsI GACNNNNNNTTYG 2 cut(s) 579, 611
AseI ATTAAT 1 cut(s) 1329
Asp700I GAANNNNTTC 1 cut(s) 1386
AspS9I GGNCC 3 cut(s) 325, 794, 989
AsuHPI GGTGA 4 cut(s) 79, 110, 127, 985
AvaII GGWCC 2 cut(s) 325, 794
BaeGI GKGCMC 1 cut(s) 1036
BalI TGGCCA 2 cut(s) 432, 1325
BanII GRGCYC 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 2 cut(s) 723, 1036
BbvI GCAGC 4 cut(s) 382, 385, 1078, 1150
BccI CCATC 1 cut(s) 155
BceAI ACGGC 4 cut(s) 203, 205, 684, 1411
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 1054
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 2 cut(s) 78, 1412
BfmI CTRYAG 3 cut(s) 390, 747, 1404
BfuAI ACCTGC 1 cut(s) 146
BfuI GTATCC 1 cut(s) 1054
BisI GCNGC 7 cut(s) 165, 293, 310, 396, 399, 1092, 1164
BlsI GCNGC 7 cut(s) 166, 294, 311, 397, 400, 1093, 1165
Bme1390I CCNGG 1 cut(s) 792
Bme18I GGWCC 2 cut(s) 325, 794
BmgT120I GGNCC 3 cut(s) 325, 794, 989
BmiI GGNNCC 5 cut(s) 193, 624, 772, 796, 990
BmrFI CCNGG 1 cut(s) 792
BmrI ACTGGG 1 cut(s) 370
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 671
Bpu10I CCTNAGC 1 cut(s) 1392
BpuEI CTTGAG 1 cut(s) 932
BsaHI GRCGYC 2 cut(s) 234, 300
BsaJI CCNNGG 4 cut(s) 790, 799, 1114, 1173
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 929
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 3 cut(s) 365, 913, 1143
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 4 cut(s) 790, 799, 1114, 1173
BseGI GGATG 6 cut(s) 475, 510, 867, 1076, 1110, 1258
BseLI CCNNNNNNNGG 1 cut(s) 929
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 888
BseNI ACTGG 3 cut(s) 365, 913, 1143
BseRI GAGGAG 6 cut(s) 46, 49, 52, 55, 148, 184
BseSI GKGCMC 1 cut(s) 1036
BseXI GCAGC 4 cut(s) 382, 385, 1078, 1150
BseYI CCCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 403
Bsh1285I CGRYCG 2 cut(s) 307, 1345
BshFI GGCC 3 cut(s) 432, 991, 1325
BsiEI CGRYCG 2 cut(s) 307, 1345
BsiHKAI GWGCWC 2 cut(s) 723, 1036
BsiSI CCGG 1 cut(s) 626
BsiWI CGTACG 1 cut(s) 543
BslFI GGGAC 2 cut(s) 35, 263
BslI CCNNNNNNNGG 1 cut(s) 929
BsmAI GTCTC 1 cut(s) 542
BsmBI CGTCTC 1 cut(s) 542
BsmFI GGGAC 2 cut(s) 35, 263
BsmI GAATGC 1 cut(s) 1040
BsnI GGCC 3 cut(s) 432, 991, 1325
Bsp1286I GDGCHC 2 cut(s) 723, 1036
Bsp143I GATC 3 cut(s) 574, 687, 1240
Bsp19I CCATGG 2 cut(s) 1114, 1173
BspANI GGCC 3 cut(s) 432, 991, 1325
BspCNI CTCAG 1 cut(s) 889
BspLI GGNNCC 5 cut(s) 193, 624, 772, 796, 990
BspMAI CTGCAG 1 cut(s) 1408
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 3 cut(s) 582, 682, 1248
BspQI GCTCTTC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 3 cut(s) 365, 913, 1143
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 4 cut(s) 790, 799, 1114, 1173
BssMI GATC 3 cut(s) 574, 687, 1240
BssNI GRCGYC 2 cut(s) 234, 300
BssT1I CCWWGG 2 cut(s) 1114, 1173
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 681, 1066, 1343
Bst6I CTCTTC 1 cut(s) 825
BstACI GRCGYC 2 cut(s) 234, 300
BstAPI GCANNNNNTGC 3 cut(s) 255, 958, 1160
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 3 cut(s) 897, 1014, 1392
BstDSI CCRYGG 3 cut(s) 799, 1114, 1173
BstF5I GGATG 6 cut(s) 475, 510, 867, 1076, 1110, 1258
BstKTI GATC 3 cut(s) 577, 690, 1243
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 3 cut(s) 574, 687, 1240
BstMCI CGRYCG 2 cut(s) 307, 1345
BstNI CCWGG 1 cut(s) 792
BstSCI CCNGG 1 cut(s) 790
BstSFI CTRYAG 3 cut(s) 390, 747, 1404
BstSLI GKGCMC 1 cut(s) 1036
BstV1I GCAGC 4 cut(s) 382, 385, 1078, 1150
BstV2I GAAGAC 1 cut(s) 671
BstX2I RGATCY 2 cut(s) 687, 1240
BstYI RGATCY 2 cut(s) 687, 1240
BsuI GTATCC 1 cut(s) 1054
BsuRI GGCC 3 cut(s) 432, 991, 1325
BtgI CCRYGG 3 cut(s) 799, 1114, 1173
BtsCI GGATG 6 cut(s) 475, 510, 867, 1076, 1110, 1258
BtsI GCAGTG 3 cut(s) 415, 420, 1161
BtsIMutI CAGTG 4 cut(s) 415, 420, 1136, 1161
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 627
Cfr10I RCCGGY 1 cut(s) 625
Cfr13I GGNCC 3 cut(s) 325, 794, 989
CseI GACGC 3 cut(s) 247, 308, 559
Csp6I GTAC 3 cut(s) 544, 822, 1358
CspCI CAANNNNNGTGG 2 cut(s) 1137, 1172
CviAII CATG 8 cut(s) 47, 322, 434, 590, 827, 1057, 1115, 1174
CviQI GTAC 3 cut(s) 544, 822, 1358
DdeI CTNAG 3 cut(s) 897, 1014, 1392
DpnI GATC 3 cut(s) 576, 689, 1242
DpnII GATC 3 cut(s) 574, 687, 1240
EaeI YGGCCR 2 cut(s) 430, 1323
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
EciI GGCGGA 5 cut(s) 142, 151, 166, 279, 325
Ecl136II GAGCTC 1 cut(s) 721
Eco130I CCWWGG 2 cut(s) 1114, 1173
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 2 cut(s) 325, 794
Eco53kI GAGCTC 1 cut(s) 721
Eco57I CTGAAG 2 cut(s) 546, 870
EcoICRI GAGCTC 1 cut(s) 721
EcoRII CCWGG 1 cut(s) 790
EcoT14I CCWWGG 2 cut(s) 1114, 1173
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 1114, 1173
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 8 cut(s) 50, 325, 437, 593, 830, 1060, 1118, 1177
FalI AAGNNNNNCTT 2 cut(s) 828, 860
FaqI GGGAC 2 cut(s) 35, 263
FatI CATG 8 cut(s) 46, 321, 433, 589, 826, 1056, 1114, 1173
FauI CCCGC 1 cut(s) 117
FauNDI CATATG 1 cut(s) 1102
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 7 cut(s) 165, 293, 310, 396, 399, 1092, 1164
FokI GGATG 6 cut(s) 482, 517, 874, 1083, 1097, 1265
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 7 cut(s) 165, 293, 310, 396, 399, 1092, 1164
FspBI CTAG 2 cut(s) 78, 1412
GluI GCNGC 7 cut(s) 165, 293, 310, 396, 399, 1092, 1164
GsaI CCCAGC 1 cut(s) 565
HaeIII GGCC 3 cut(s) 432, 991, 1325
HapII CCGG 1 cut(s) 626
HgaI GACGC 3 cut(s) 247, 308, 559
Hin1I GRCGYC 2 cut(s) 234, 300
Hin1II CATG 8 cut(s) 50, 325, 437, 593, 830, 1060, 1118, 1177
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 3 cut(s) 315, 528, 1233
HinfI GANTC 3 cut(s) 84, 489, 899
HpaII CCGG 1 cut(s) 626
HphI GGTGA 4 cut(s) 79, 110, 127, 985
Hpy166II GTNNAC 3 cut(s) 262, 1034, 1358
Hpy188I TCNGA 3 cut(s) 770, 889, 1240
Hpy188III TCNNGA 2 cut(s) 479, 1298
Hpy8I GTNNAC 3 cut(s) 262, 1034, 1358
Hpy99I CGWCG 4 cut(s) 236, 239, 263, 302
HpyAV CCTTC 5 cut(s) 138, 208, 479, 931, 1363
HpyCH4III ACNGT 3 cut(s) 681, 1066, 1343
HpyCH4IV ACGT 3 cut(s) 234, 276, 870
HpyF3I CTNAG 3 cut(s) 897, 1014, 1392
HpySE526I ACGT 3 cut(s) 234, 276, 870
Hsp92I GRCGYC 2 cut(s) 234, 300
Hsp92II CATG 8 cut(s) 50, 325, 437, 593, 830, 1060, 1118, 1177
KroI GCCGGC 1 cut(s) 625
KroNI GCCGGC 1 cut(s) 627
Kzo9I GATC 3 cut(s) 574, 687, 1240
LguI GCTCTTC 1 cut(s) 825
LmnI GCTCC 2 cut(s) 197, 622
Lsp1109I GCAGC 4 cut(s) 382, 385, 1078, 1150
MaeI CTAG 2 cut(s) 78, 1412
MaeII ACGT 3 cut(s) 234, 276, 870
MaeIII GTNAC 6 cut(s) 10, 385, 479, 866, 1337, 1375
MalI GATC 3 cut(s) 576, 689, 1242
MboI GATC 3 cut(s) 574, 687, 1240
MboII GAAGA 5 cut(s) 467, 676, 842, 866, 869
MfeI CAATTG 2 cut(s) 1143, 1351
MflI RGATCY 2 cut(s) 687, 1240
MhlI GDGCHC 2 cut(s) 723, 1036
MlsI TGGCCA 2 cut(s) 432, 1325
MluNI TGGCCA 2 cut(s) 432, 1325
MlyI GAGTC 2 cut(s) 78, 908
MmeI TCCRAC 3 cut(s) 447, 748, 1048
Mox20I TGGCCA 2 cut(s) 432, 1325
MroNI GCCGGC 1 cut(s) 625
MroXI GAANNNNTTC 1 cut(s) 1386
MscI TGGCCA 2 cut(s) 432, 1325
MseI TTAA 7 cut(s) 222, 641, 846, 915, 981, 1245, 1329
Msp20I TGGCCA 2 cut(s) 432, 1325
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 1 cut(s) 792
MunI CAATTG 2 cut(s) 1143, 1351
Mva1269I GAATGC 1 cut(s) 1040
MvaI CCWGG 1 cut(s) 792
NaeI GCCGGC 1 cut(s) 627
NcoI CCATGG 2 cut(s) 1114, 1173
NdeI CATATG 1 cut(s) 1102
NdeII GATC 3 cut(s) 574, 687, 1240
NgoMIV GCCGGC 1 cut(s) 625
NlaIII CATG 8 cut(s) 50, 325, 437, 593, 830, 1060, 1118, 1177
NlaIV GGNNCC 5 cut(s) 193, 624, 772, 796, 990
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 4 cut(s) 385, 479, 866, 1337
PaqCI CACCTGC 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 825
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PctI GAATGC 1 cut(s) 1040
PdiI GCCGGC 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 1386
PfeI GAWTC 1 cut(s) 489
Pfl23II CGTACG 1 cut(s) 543
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 7 cut(s) 166, 294, 311, 397, 400, 1093, 1165
PleI GAGTC 2 cut(s) 78, 907
PpsI GAGTC 2 cut(s) 78, 907
PshBI ATTAAT 1 cut(s) 1329
PsiI TTATAA 1 cut(s) 1010
Psp124BI GAGCTC 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 790
PspFI CCCAGC 1 cut(s) 561
PspGI CCWGG 1 cut(s) 790
PspLI CGTACG 1 cut(s) 543
PspN4I GGNNCC 5 cut(s) 193, 624, 772, 796, 990
PspPI GGNCC 3 cut(s) 325, 794, 989
PsrI GAACNNNNNNTAC 2 cut(s) 443, 475
PstI CTGCAG 1 cut(s) 1408
PsuI RGATCY 2 cut(s) 687, 1240
PsyI GACNNNGTC 1 cut(s) 266
RsaI GTAC 3 cut(s) 545, 823, 1359
RsaNI GTAC 3 cut(s) 544, 822, 1358
SacI GAGCTC 1 cut(s) 723
SalI GTCGAC 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 825
SaqAI TTAA 7 cut(s) 222, 641, 846, 915, 981, 1245, 1329
SatI GCNGC 7 cut(s) 165, 293, 310, 396, 399, 1092, 1164
Sau3AI GATC 3 cut(s) 574, 687, 1240
Sau96I GGNCC 3 cut(s) 325, 794, 989
SchI GAGTC 2 cut(s) 78, 908
ScrFI CCNGG 1 cut(s) 792
SduI GDGCHC 2 cut(s) 723, 1036
SfcI CTRYAG 3 cut(s) 390, 747, 1404
SinI GGWCC 2 cut(s) 325, 794
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
SspMI CTAG 2 cut(s) 78, 1412
SstI GAGCTC 1 cut(s) 723
StyD4I CCNGG 1 cut(s) 790
StyI CCWWGG 2 cut(s) 1114, 1173
TaaI ACNGT 3 cut(s) 681, 1066, 1343
TaiI ACGT 3 cut(s) 237, 279, 873
TaqI TCGA 4 cut(s) 231, 261, 604, 786
TauI GCSGC 3 cut(s) 167, 295, 312
TfiI GAWTC 1 cut(s) 489
Tru1I TTAA 7 cut(s) 222, 641, 846, 915, 981, 1245, 1329
Tru9I TTAA 7 cut(s) 222, 641, 846, 915, 981, 1245, 1329
TscAI CASTG 4 cut(s) 422, 427, 1143, 1161
TseFI GTSAC 4 cut(s) 385, 479, 866, 1337
TseI GCWGC 4 cut(s) 395, 398, 1091, 1163
Tsp45I GTSAC 4 cut(s) 385, 479, 866, 1337
TspDTI ATGAA 6 cut(s) 459, 521, 843, 1099, 1284, 1296
TspRI CASTG 4 cut(s) 422, 427, 1143, 1161
Tth111I GACNNNGTC 1 cut(s) 266
VneI GTGCAC 1 cut(s) 1032
VpaK11BI GGWCC 2 cut(s) 325, 794
VspI ATTAAT 1 cut(s) 1329
XapI RAATTY 1 cut(s) 1285
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 1386
XspI CTAG 2 cut(s) 78, 1412
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.