Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009506

Physical Location & Seq

Genomic Coordinates Forward (+)

19672404 .. 19673625

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGTGACGTTCTTCTCCTAACATCTGATGAGGCTGAGTCATTGACGAGCATTAAAAACCCAATATTAGCAGGGCAGGAGCTGCTCAAGCAAGGGGTGCACACAAAATGGGTGATTGTCAAAATGGGTCCAAGGGGTTCAATTCTAATAACTAGGTCAAGTATTTCTTTCGCACCAGCTTTTGAGGTAAATGTCGTAGATACTGTTGGATGTGGAGATAGTTTCGTGGCTGCGATTGCATATGGTTTTATCCACAACATGCCGATGGTGAACACATTAGCAATTGCAAATGCAGTAGGTGCTGCAACCGCCACAGGTTGTGGTGCTGGTAGGAATGTGGCAACCTTGGATAAAGTAATAGAACTTATAAGGGCATCTAATCTCAAGGAGGATGACAAATTTTGGAATGAGTTAGTTGATGAAAATTTGGGTGTCGAGGAAATTACATCGCTTTCAAATTTGGTCATCAATGGAAGTGATAACCGGTTAAATTGTGTATCCTTGCAGAAGGTGGTATCCGAATTGCTTCCTAAGCTCAAATCTGCACAGTTAGAAAGAAAAGTGTCTTTTTCTGGAGCACGATCGATCATAACAACGGTAGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

203

Amino Acids

21.53

Weight (kDa)

5.44

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06730
fragaria_vesca	FvH4_2g22240 FvH4_2g22240
malus_domestica	MD05G1203500.v1.1 MD10G1190800.v1.1
prunus_persica	Prupe.8G229800_v2.0.a1
pyrus_communis	pycom05g19000 pycom10g16440 pycom10g16450
rosa_chinensis	RchiOBHm_Chr6g0289161
rosa_laevigata	RLG00000012326 RLG00000027968
rosa_multiflora	Rmu_sc0001527.1_g000002 Rmu_sc0023359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179520
rosa_rugosa	Rorug06G0201300 Rorug06G0201400
rosa_samantha	Rh6AG312500 Rh6BG319400 Rh6CG325900 Rh6DG311800
rosa_wichuraiana	Rw6G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AciI	CCGC	1 cut(s)	309
AcsI	RAATTY	3 cut(s)	398, 424, 457
AgeI	ACCGGT	1 cut(s)	483
AgsI	TTSAA	2 cut(s)	141, 456
AluBI	AGCT	3 cut(s)	82, 179, 535
AluI	AGCT	3 cut(s)	82, 179, 535
Alw21I	GWGCWC	2 cut(s)	102, 580
Alw44I	GTGCAC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	82
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	82, 230, 302
ApoI	RAATTY	3 cut(s)	398, 424, 457
AsiGI	ACCGGT	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	124, 280
AvaII	GGWCC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	102
Bbv12I	GWGCWC	2 cut(s)	102, 580
BbvI	GCAGC	3 cut(s)	69, 217, 289
BccI	CCATC	1 cut(s)	259
BciVI	GTATCC	2 cut(s)	508, 526
BfaI	CTAG	1 cut(s)	153
BfuI	GTATCC	2 cut(s)	508, 526
BisI	GCNGC	3 cut(s)	83, 231, 303
BlsI	GCNGC	3 cut(s)	84, 232, 304
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	71, 368
Bsa29I	ATCGAT	1 cut(s)	584
BsaJI	CCNNGG	2 cut(s)	131, 345
BsaWI	WCCGGW	1 cut(s)	483
Bse118I	RCCGGY	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	131, 345
BseGI	GGATG	2 cut(s)	215, 397
BseMII	CTCAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	69, 217, 289
BsgI	GTGCAG	1 cut(s)	528
Bsh1285I	CGRYCG	1 cut(s)	584
BshTI	ACCGGT	1 cut(s)	483
BshVI	ATCGAT	1 cut(s)	584
BsiEI	CGRYCG	1 cut(s)	584
BsiHKAI	GWGCWC	2 cut(s)	102, 580
BsiSI	CCGG	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	102, 580
Bsp143I	GATC	2 cut(s)	581, 585
BspACI	CCGC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	28
BspDI	ATCGAT	1 cut(s)	584
BspLI	GGNNCC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	483
BssAI	RCCGGY	1 cut(s)	483
BssECI	CCNNGG	2 cut(s)	131, 345
BssMI	GATC	2 cut(s)	581, 585
BssT1I	CCWWGG	2 cut(s)	131, 345
Bst4CI	ACNGT	3 cut(s)	205, 549, 598
BstAPI	GCANNNNNTGC	3 cut(s)	82, 97, 299
BstDEI	CTNAG	2 cut(s)	36, 531
BstF5I	GGATG	2 cut(s)	215, 397
BstKTI	GATC	2 cut(s)	584, 588
BstMBI	GATC	2 cut(s)	581, 585
BstMCI	CGRYCG	1 cut(s)	584
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 88, 97, 236, 299, 308, 532
BstNSI	RCATGY	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	69, 217, 289
Bsu15I	ATCGAT	1 cut(s)	584
BsuI	GTATCC	2 cut(s)	508, 526
BsuTUI	ATCGAT	1 cut(s)	584
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	215, 397
CaiI	CAGNNNCTG	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	584
CspAI	ACCGGT	1 cut(s)	483
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	5 cut(s)	35, 82, 179, 230, 535
CviKI_1	RGCY	5 cut(s)	35, 82, 179, 230, 535
DdeI	CTNAG	2 cut(s)	36, 531
DpnI	GATC	2 cut(s)	583, 587
DpnII	GATC	2 cut(s)	581, 585
Eco130I	CCWWGG	2 cut(s)	131, 345
Eco47I	GGWCC	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	131, 345
ErhI	CCWWGG	2 cut(s)	131, 345
FaeI	CATG	1 cut(s)	262
FaiI	YATR	5 cut(s)	241, 243, 260, 368, 590
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FatI	CATG	1 cut(s)	258
FauNDI	CATATG	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	83, 231, 303
FokI	GGATG	2 cut(s)	222, 404
Fsp4HI	GCNGC	3 cut(s)	83, 231, 303
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	3 cut(s)	83, 231, 303
GsuI	CTGGAG	1 cut(s)	594
HapII	CCGG	1 cut(s)	484
Hin1II	CATG	1 cut(s)	262
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	2 cut(s)	124, 280
Hpy166II	GTNNAC	2 cut(s)	100, 271
Hpy188I	TCNGA	2 cut(s)	28, 520
Hpy188III	TCNNGA	1 cut(s)	573
Hpy8I	GTNNAC	2 cut(s)	100, 271
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	3 cut(s)	205, 549, 598
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	7 cut(s)	100, 239, 287, 293, 305, 505, 545
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 88, 97, 236, 299, 308, 532
HpyF3I	CTNAG	2 cut(s)	36, 531
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	581, 585
LmnI	GCTCC	2 cut(s)	79, 575
LpnPI	CCDG	7 cut(s)	57, 62, 189, 300, 312, 497, 558
Lsp1109I	GCAGC	3 cut(s)	69, 217, 289
LweI	GCATC	1 cut(s)	383
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	2 cut(s)	583, 587
MboI	GATC	2 cut(s)	581, 585
MboII	GAAGA	1 cut(s)	5
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	102, 580
MluCI	AATT	8 cut(s)	141, 282, 398, 424, 441, 457, 490, 521
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	4 cut(s)	25, 178, 382, 430
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	2 cut(s)	54, 488
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	1 cut(s)	484
MunI	CAATTG	1 cut(s)	282
MwoI	GCNNNNNNNGC	7 cut(s)	82, 88, 97, 236, 299, 308, 532
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	2 cut(s)	581, 585
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	525
PinAI	ACCGGT	1 cut(s)	483
PkrI	GCNGC	3 cut(s)	84, 232, 304
Ple19I	CGATCG	1 cut(s)	584
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	584
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	54, 488
SatI	GCNGC	3 cut(s)	83, 231, 303
Sau3AI	GATC	2 cut(s)	581, 585
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	102, 580
SfaNI	GCATC	1 cut(s)	383
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	86, 383
SmoI	CTYRAG	2 cut(s)	86, 383
Sse9I	AATT	8 cut(s)	141, 282, 398, 424, 441, 457, 490, 521
SsiI	CCGC	1 cut(s)	309
SspI	AATATT	1 cut(s)	66
SspMI	CTAG	1 cut(s)	153
StyI	CCWWGG	2 cut(s)	131, 345
TaaI	ACNGT	3 cut(s)	205, 549, 598
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	435, 584
TasI	AATT	8 cut(s)	141, 282, 398, 424, 441, 457, 490, 521
Tru1I	TTAA	2 cut(s)	54, 488
Tru9I	TTAA	2 cut(s)	54, 488
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	82, 230, 302
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	435
VneI	GTGCAC	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	3 cut(s)	398, 424, 457
XceI	RCATGY	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.