Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009506

Physical Location & Seq

Genomic Coordinates Forward (+)

19670973 .. 19672185

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCATCACTGCACCGTAACCCTGAAACCCCCACCTCCACACCATGTATCCTCCTCTCGCTCCCACCTGATTTTTCCCCCCAGCCCTAGGCTGACCAAATCCCAATCCCACCCCATCTTCACGCCAATTTACATTCGTGCTCATTCCGTCTCCAACCGCACCGCCAGAGGGCTCGATGTCTCCGTCTCCAAACACTCCCCAAACGCCAGCGCCCCAAATGGCTCCCTACACGATTGGAAGCCGAAGAACGTCGGCGTTAAAGACGTAGATGTCGCCACTCTCGGCAATCTCTGCGTGGATATCGTGCTCAATGTGCCCAAATTGCCACCGCCCAATGTCCACGACCGCAAATCTTACATGGACCGGTTGTCCGCCTCGCCGCCGGATAAGCAATACTGGGAAGCTGGTGGAAACTGCAATATGGCCATAGCAGCTGCAAGATTAGGACTTAAGTGCATCGCAATTGGGCACGTGGGTAACGAAGTATATGGACAGTTCCTTTTAGATGTCCTTCAAGATGAAGGAATTAGCATGGTTGGAGTGAGTGACAACAATACCAATGTTGACAGTTCAAGTGCAACGTATGAAACACTTTTATGCTGGGTACTCGTCGATCCATTGCAAAGACATGGTTTTTCCGAGCTGATTTCAGTAAGGAGCCTGCATTCAGTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

226

Amino Acids

24.44

Weight (kDa)

8.29

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06730
fragaria_vesca	FvH4_2g22240 FvH4_2g22240
malus_domestica	MD05G1203500.v1.1 MD10G1190800.v1.1
prunus_persica	Prupe.8G229800_v2.0.a1
pyrus_communis	pycom05g19000 pycom10g16440 pycom10g16450
rosa_chinensis	RchiOBHm_Chr6g0289161
rosa_laevigata	RLG00000012326 RLG00000027968
rosa_multiflora	Rmu_sc0001527.1_g000002 Rmu_sc0023359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179520
rosa_rugosa	Rorug06G0201300 Rorug06G0201400
rosa_samantha	Rh6AG312500 Rh6BG319400 Rh6CG325900 Rh6DG311800
rosa_wichuraiana	Rw6G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AciI	CCGC	6 cut(s)	157, 162, 329, 346, 372, 380
AclWI	GGATC	1 cut(s)	608
AcoI	YGGCCR	1 cut(s)	423
AcvI	CACGTG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	2 cut(s)	87, 168
AflII	CTTAAG	1 cut(s)	449
AgeI	ACCGGT	1 cut(s)	363
AgsI	TTSAA	2 cut(s)	515, 573
AhdI	GACNNNNNGTC	1 cut(s)	367
AluBI	AGCT	3 cut(s)	404, 434, 643
AluI	AGCT	3 cut(s)	404, 434, 643
Alw21I	GWGCWC	2 cut(s)	142, 309
Alw26I	GTCTC	3 cut(s)	154, 184, 190
AlwI	GGATC	1 cut(s)	608
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	431, 434
AsiGI	ACCGGT	1 cut(s)	363
AspA2I	CCTAGG	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	361
AvrII	CCTAGG	1 cut(s)	86
BaeGI	GKGCMC	2 cut(s)	318, 471
BalI	TGGCCA	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	174
BbrPI	CACGTG	1 cut(s)	472
Bbv12I	GWGCWC	2 cut(s)	142, 309
BbvI	GCAGC	2 cut(s)	421, 443
BccI	CCATC	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	58
BcoDI	GTCTC	3 cut(s)	154, 184, 190
BfaI	CTAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	3 cut(s)	380, 432, 435
BlnI	CCTAGG	1 cut(s)	86
BlsI	GCNGC	3 cut(s)	381, 433, 436
Bme18I	GGWCC	1 cut(s)	361
BmeRI	GACNNNNNGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	223, 659
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	2 cut(s)	13, 465
BmuI	ACTGGG	1 cut(s)	406
BsaAI	YACGTR	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 168
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	87, 168
BseMI	GCAATG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	2 cut(s)	318, 471
BseXI	GCAGC	2 cut(s)	421, 443
BseYI	CCCAGC	2 cut(s)	80, 600
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	1 cut(s)	425
BshTI	ACCGGT	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	2 cut(s)	142, 309
BsiSI	CCGG	2 cut(s)	364, 383
BslI	CCNNNNNNNGG	2 cut(s)	87, 168
BsmAI	GTCTC	3 cut(s)	154, 184, 190
BsmBI	CGTCTC	2 cut(s)	154, 190
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	1 cut(s)	425
Bsp1286I	GDGCHC	5 cut(s)	142, 174, 309, 318, 471
Bsp143I	GATC	1 cut(s)	613
BspACI	CCGC	6 cut(s)	157, 162, 329, 346, 372, 380
BspANI	GGCC	1 cut(s)	425
BspLI	GGNNCC	2 cut(s)	223, 659
BspPI	GGATC	1 cut(s)	608
BspTI	CTTAAG	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	617
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	16, 495, 569
BstAFI	CTTAAG	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	208, 662
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	616
BstMAI	GTCTC	3 cut(s)	154, 184, 190
BstMBI	GATC	1 cut(s)	613
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	5 cut(s)	291, 313, 322, 388, 431
BstSLI	GKGCMC	2 cut(s)	318, 471
BstV1I	GCAGC	2 cut(s)	421, 443
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	425
BtgZI	GCGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	2 cut(s)	208, 662
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	605
CspAI	ACCGGT	1 cut(s)	363
CviAII	CATG	4 cut(s)	44, 358, 532, 629
CviQI	GTAC	1 cut(s)	605
DpnI	GATC	1 cut(s)	615
DpnII	GATC	1 cut(s)	613
DrdI	GACNNNNNNGTC	1 cut(s)	269
DriI	GACNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	423
Eam1105I	GACNNNNNGTC	1 cut(s)	367
EciI	GGCGGA	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	361
Eco72I	CACGTG	1 cut(s)	472
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	86
Esp3I	CGTCTC	2 cut(s)	154, 190
FaeI	CATG	4 cut(s)	47, 361, 535, 632
FatI	CATG	4 cut(s)	43, 357, 531, 628
Fnu4HI	GCNGC	3 cut(s)	380, 432, 435
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	3 cut(s)	380, 432, 435
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	380, 432, 435
GsaI	CCCAGC	2 cut(s)	84, 604
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	2 cut(s)	364, 383
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	47, 361, 535, 632
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HpaII	CCGG	2 cut(s)	364, 383
Hpy166II	GTNNAC	2 cut(s)	340, 565
Hpy188I	TCNGA	1 cut(s)	640
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	2 cut(s)	340, 565
Hpy99I	CGWCG	2 cut(s)	254, 614
HpyAV	CCTTC	2 cut(s)	515, 521
HpyCH4III	ACNGT	3 cut(s)	16, 495, 569
HpyCH4IV	ACGT	4 cut(s)	249, 264, 471, 581
HpyCH4V	TGCA	8 cut(s)	4, 12, 417, 437, 456, 578, 622, 664
HpyF10VI	GCNNNNNNNGC	5 cut(s)	291, 313, 322, 388, 431
HpySE526I	ACGT	4 cut(s)	249, 264, 471, 581
Hsp92II	CATG	4 cut(s)	47, 361, 535, 632
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	613
LmnI	GCTCC	3 cut(s)	65, 227, 657
Lsp1109I	GCAGC	2 cut(s)	421, 443
LweI	GCATC	2 cut(s)	13, 465
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	4 cut(s)	249, 264, 471, 581
MaeIII	GTNAC	3 cut(s)	16, 476, 545
MalI	GATC	1 cut(s)	615
MboI	GATC	1 cut(s)	613
MboII	GAAGA	2 cut(s)	109, 256
MfeI	CAATTG	1 cut(s)	462
MhlI	GDGCHC	5 cut(s)	142, 174, 309, 318, 471
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	4 cut(s)	126, 320, 462, 525
MluNI	TGGCCA	1 cut(s)	425
MmeI	TCCRAC	3 cut(s)	177, 517, 652
MnlI	CCTC	5 cut(s)	45, 61, 64, 161, 385
Mox20I	TGGCCA	1 cut(s)	425
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	2 cut(s)	258, 450
MslI	CAYNNNNRTG	1 cut(s)	595
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	2 cut(s)	364, 383
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	664
MwoI	GCNNNNNNNGC	5 cut(s)	291, 313, 322, 388, 431
NdeII	GATC	1 cut(s)	613
NlaIII	CATG	4 cut(s)	47, 361, 535, 632
NlaIV	GGNNCC	2 cut(s)	223, 659
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	545
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 477
PctI	GAATGC	1 cut(s)	664
PinAI	ACCGGT	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	381, 433, 436
PmaCI	CACGTG	1 cut(s)	472
PmlI	CACGTG	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	472
PspCI	CACGTG	1 cut(s)	472
PspFI	CCCAGC	2 cut(s)	80, 600
PspN4I	GGNNCC	2 cut(s)	223, 659
PspPI	GGNCC	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
RseI	CAYNNNNRTG	1 cut(s)	595
SaqAI	TTAA	2 cut(s)	258, 450
SatI	GCNGC	3 cut(s)	380, 432, 435
Sau3AI	GATC	1 cut(s)	613
Sau96I	GGNCC	1 cut(s)	361
SduI	GDGCHC	5 cut(s)	142, 174, 309, 318, 471
SetI	ASST	9 cut(s)	37, 69, 252, 267, 406, 436, 474, 584, 645
SfaNI	GCATC	2 cut(s)	13, 465
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	595
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	4 cut(s)	126, 320, 462, 525
SsiI	CCGC	6 cut(s)	157, 162, 329, 346, 372, 380
SspMI	CTAG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	3 cut(s)	16, 495, 569
TaiI	ACGT	4 cut(s)	252, 267, 474, 584
TaqI	TCGA	2 cut(s)	174, 612
TasI	AATT	4 cut(s)	126, 320, 462, 525
TauI	GCSGC	1 cut(s)	382
Tru1I	TTAA	2 cut(s)	258, 450
Tru9I	TTAA	2 cut(s)	258, 450
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	431, 434
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	2 cut(s)	534, 600
TspGWI	ACGGA	2 cut(s)	136, 172
TspRI	CASTG	1 cut(s)	14
Vha464I	CTTAAG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	361
XmaJI	CCTAGG	1 cut(s)	86
XspI	CTAG	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.