RLG00000027968

pfkB family carbohydrate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0009506
Physical Location & Seq
Forward (+)
17325724 .. 17327413
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027968

Sequence Viewer

Length: 345 bp
ATGGAGGTCGATAAGGCTGAGTCATTGACTGGCATTAAAAACCCGATATTAGCAGGGCAGCAGTTGCTCAAGCAAGGGTCTGGCATCTCTTGTGCGCCAGCAATCAAGGTAAAAGTCATGGACACTGTTGGATGCGGAGATATTTTTGTAGCTGCCATTGCATATGGTTTCATCCATAATATGCCAATGGTAAATACATTAGCAATTGCAAATGCGGTCGGTGCTGCAACCGCCATGGGTTGTGGTGCTGGTAGGAATGTGGCAACGTTGGATAAAGAAATTACAGTTCTCTCAAAATTGGTCATTAATGGAAGTGACAGTCAGCTGAATAGTGTCCCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PfkB

Protein Analysis

115

Amino Acids

11.61

Weight (kDa)

6.53

Isoelectric Point (pI)

20.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 25 - 83 2.2e-11 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 135, 215, 231
AclI AACGTT 1 cut(s) 266
AluBI AGCT 2 cut(s) 152, 325
AluI AGCT 2 cut(s) 152, 325
ApeKI GCWGC 3 cut(s) 58, 152, 224
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 70, 139, 211
BisI GCNGC 3 cut(s) 59, 153, 225
BlsI GCNGC 3 cut(s) 60, 154, 226
BmsI GCATC 2 cut(s) 93, 122
BpuEI CTTGAG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 137, 171
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 34
BseXI GCAGC 3 cut(s) 70, 139, 211
Bsh1285I CGRYCG 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 320
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 3 cut(s) 135, 215, 231
BspCNI CTCAG 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 127, 286, 320
BstAPI GCANNNNNTGC 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 137, 171
BstHHI GCGC 1 cut(s) 97
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 64, 158, 221, 230
BstV1I GCAGC 3 cut(s) 70, 139, 211
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 137, 171
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 97
CviAII CATG 2 cut(s) 118, 235
CviJI RGCY 3 cut(s) 17, 152, 325
CviKI_1 RGCY 3 cut(s) 17, 152, 325
DdeI CTNAG 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 121, 238
FaiI YATR 6 cut(s) 119, 163, 165, 177, 182, 236
FaqI GGGAC 1 cut(s) 320
FatI CATG 2 cut(s) 117, 234
FauNDI CATATG 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 59, 153, 225
FokI GGATG 2 cut(s) 144, 158
Fsp4HI GCNGC 3 cut(s) 59, 153, 225
GlaI GCGC 1 cut(s) 96
GluI GCNGC 3 cut(s) 59, 153, 225
HhaI GCGC 1 cut(s) 97
Hin1II CATG 2 cut(s) 121, 238
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HinfI GANTC 1 cut(s) 20
HpyCH4III ACNGT 3 cut(s) 127, 286, 320
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 161, 209, 227
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 158, 221, 230
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 2 cut(s) 121, 238
HspAI GCGC 1 cut(s) 95
LpnPI CCDG 5 cut(s) 15, 39, 66, 111, 234
Lsp1109I GCAGC 3 cut(s) 70, 139, 211
LweI GCATC 2 cut(s) 93, 122
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 314
MfeI CAATTG 1 cut(s) 204
MluCI AATT 3 cut(s) 204, 279, 296
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 109, 249
MseI TTAA 2 cut(s) 36, 306
MspA1I CMGCKG 1 cut(s) 325
MunI CAATTG 1 cut(s) 204
MwoI GCNNNNNNNGC 4 cut(s) 64, 158, 221, 230
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 163
NlaIII CATG 2 cut(s) 121, 238
NmuCI GTSAC 1 cut(s) 314
PkrI GCNGC 3 cut(s) 60, 154, 226
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 306
Psp1406I AACGTT 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 325
SaqAI TTAA 2 cut(s) 36, 306
SatI GCNGC 3 cut(s) 59, 153, 225
SchI GAGTC 1 cut(s) 29
SetI ASST 5 cut(s) 9, 111, 154, 269, 327
SfaNI GCATC 2 cut(s) 93, 122
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 3 cut(s) 204, 279, 296
SsiI CCGC 3 cut(s) 135, 215, 231
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 3 cut(s) 127, 286, 320
TaiI ACGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 9
TasI AATT 3 cut(s) 204, 279, 296
Tru1I TTAA 2 cut(s) 36, 306
Tru9I TTAA 2 cut(s) 36, 306
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 3 cut(s) 58, 152, 224
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 160
TspRI CASTG 1 cut(s) 130
VspI ATTAAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.