Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023359.1

Orthogroup ID

OG0009506

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1855

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023359.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 679 bp

ctgttctgtaatggttatggctttgacgagctctctcctgctgtaatagcctcagctgtagagtatgctgttgaagttggaacagcaatttttttcgaccctggaccccgcggaaagagcctctctgctggtacacctgaagaacaaggagcacttaacctgttgttgaggatgagtgacgttcttcttctaacttcagatgaggctgagtcattgactggcattaaaaacccgatattagcagggcagcagttgctcaagcaaggggtgcaaacaaaatgggtgattgttaaaatggggccaaagggttcaattctcataactaagtctggcatctcttgtgcaccagcattcaaggtaaaggtcatggacactgttggatgcggagacagttttgtagctgccattgcatatggtttcatccacaatatgccaatggtaaatacattagcaattgcaaatgcagtgggtgctgcaactgccatgggttgtggtgctggtaggaatgtggcgacgttggataaagtacttgaaattgtgaaagcttcgaatcttaatgaggatgatgaattttggaatgaaatatttgatgaaaattcgggtgttcaggaaattacagctgtctcaaaattggtcattaatggaagtgacagtcagctgaatagtgtccctttgcaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

226

Amino Acids

23.7

Weight (kDa)

4.59

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06730
fragaria_vesca	FvH4_2g22240 FvH4_2g22240
malus_domestica	MD05G1203500.v1.1 MD10G1190800.v1.1
prunus_persica	Prupe.8G229800_v2.0.a1
pyrus_communis	pycom05g19000 pycom10g16440 pycom10g16450
rosa_chinensis	RchiOBHm_Chr6g0289161
rosa_laevigata	RLG00000012326 RLG00000027968
rosa_multiflora	Rmu_sc0001527.1_g000002 Rmu_sc0023359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179520
rosa_rugosa	Rorug06G0201300 Rorug06G0201400
rosa_samantha	Rh6AG312500 Rh6BG319400 Rh6CG325900 Rh6DG311800
rosa_wichuraiana	Rw6G026990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	109, 111, 384
AcsI	RAATTY	2 cut(s)	569, 595
AcuI	CTGAAG	2 cut(s)	159, 180
AfaI	GTAC	2 cut(s)	133, 528
AgsI	TTSAA	4 cut(s)	74, 312, 355, 533
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	6 cut(s)	31, 56, 401, 545, 620, 658
AluI	AGCT	6 cut(s)	31, 56, 401, 545, 620, 658
Alw21I	GWGCWC	3 cut(s)	33, 154, 346
Alw26I	GTCTC	2 cut(s)	381, 628
Alw44I	GTGCAC	1 cut(s)	342
AoxI	GGCC	1 cut(s)	299
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	3 cut(s)	247, 401, 473
ApoI	RAATTY	2 cut(s)	569, 595
AseI	ATTAAT	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	104, 299
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	3 cut(s)	33, 154, 346
BbvCI	CCTCAGC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	259, 388, 460
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	381, 628
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	3 cut(s)	248, 402, 474
BlsI	GCNGC	3 cut(s)	249, 403, 475
BmcAI	AGTACT	1 cut(s)	528
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	104, 299
BmiI	GGNNCC	2 cut(s)	106, 300
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	342, 371
Bpu10I	CCTNAGC	1 cut(s)	52
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	100, 109, 483
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	100, 109, 483
BseGI	GGATG	4 cut(s)	177, 386, 420, 568
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	66, 198
BseNI	ACTGG	1 cut(s)	223
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	259, 388, 460
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	301
BsiHKAI	GWGCWC	3 cut(s)	33, 154, 346
BslFI	GGGAC	1 cut(s)	653
BsmAI	GTCTC	2 cut(s)	381, 628
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	3 cut(s)	33, 154, 346
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	3 cut(s)	109, 111, 384
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	2 cut(s)	65, 199
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	106, 300
BspT104I	TTCGAA	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	3 cut(s)	100, 109, 483
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	376, 392, 653
BstAPI	GCANNNNNTGC	3 cut(s)	253, 268, 470
BstBI	TTCGAA	1 cut(s)	548
BstDEI	CTNAG	3 cut(s)	52, 207, 324
BstDSI	CCRYGG	2 cut(s)	109, 483
BstF5I	GGATG	4 cut(s)	177, 386, 420, 568
BstFNI	CGCG	1 cut(s)	111
BstMAI	GTCTC	2 cut(s)	381, 628
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 117, 253, 268, 407, 470, 479
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	259, 388, 460
BsuRI	GGCC	1 cut(s)	301
BtgI	CCRYGG	2 cut(s)	109, 483
BtsCI	GGATG	4 cut(s)	177, 386, 420, 568
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	372, 471
Cfr13I	GGNCC	2 cut(s)	104, 299
Cfr42I	CCGCGG	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	132, 527
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	2 cut(s)	367, 484
CviQI	GTAC	2 cut(s)	132, 527
DdeI	CTNAG	3 cut(s)	52, 207, 324
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	159, 180
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	2 cut(s)	370, 487
FaiI	YATR	8 cut(s)	18, 66, 320, 368, 412, 414, 431, 485
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	2 cut(s)	366, 483
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	248, 402, 474
FokI	GGATG	4 cut(s)	184, 393, 407, 575
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	3 cut(s)	248, 402, 474
GluI	GCNGC	3 cut(s)	248, 402, 474
HaeIII	GGCC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	370, 487
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	2 cut(s)	209, 550
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	2 cut(s)	134, 344
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	608
Hpy8I	GTNNAC	2 cut(s)	134, 344
Hpy99I	CGWCG	1 cut(s)	517
HpyCH4III	ACNGT	3 cut(s)	376, 392, 653
HpyCH4IV	ACGT	2 cut(s)	180, 515
HpyCH4V	TGCA	7 cut(s)	271, 344, 410, 458, 464, 476, 676
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 117, 253, 268, 407, 470, 479
HpyF3I	CTNAG	3 cut(s)	52, 207, 324
HpySE526I	ACGT	2 cut(s)	180, 515
Hsp92II	CATG	2 cut(s)	370, 487
KspI	CCGCGG	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	3 cut(s)	259, 388, 460
LweI	GCATC	2 cut(s)	342, 371
MaeII	ACGT	2 cut(s)	180, 515
MaeIII	GTNAC	2 cut(s)	176, 647
MboII	GAAGA	3 cut(s)	152, 176, 179
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	3 cut(s)	33, 154, 346
MluCI	AATT	8 cut(s)	87, 312, 453, 534, 569, 595, 612, 629
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	3 cut(s)	58, 358, 498
MnlI	CCTC	5 cut(s)	61, 131, 162, 196, 553
MseI	TTAA	5 cut(s)	156, 225, 291, 555, 639
MspA1I	CMGCKG	4 cut(s)	56, 111, 620, 658
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	7 cut(s)	47, 117, 253, 268, 407, 470, 479
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	412
NlaIII	CATG	2 cut(s)	370, 487
NlaIV	GGNNCC	2 cut(s)	106, 300
NmuCI	GTSAC	2 cut(s)	176, 647
NspV	TTCGAA	1 cut(s)	548
PctI	GAATGC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	249, 403, 475
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PshBI	ATTAAT	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	106, 300
PspPI	GGNCC	2 cut(s)	104, 299
PvuII	CAGCTG	3 cut(s)	56, 620, 658
RsaI	GTAC	2 cut(s)	133, 528
RsaNI	GTAC	2 cut(s)	132, 527
SacI	GAGCTC	1 cut(s)	33
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	5 cut(s)	156, 225, 291, 555, 639
SatI	GCNGC	3 cut(s)	248, 402, 474
Sau96I	GGNCC	2 cut(s)	104, 299
ScaI	AGTACT	1 cut(s)	528
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	3 cut(s)	33, 154, 346
SfaNI	GCATC	2 cut(s)	342, 371
SfcI	CTRYAG	1 cut(s)	57
Sfr303I	CCGCGG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	548
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	8 cut(s)	87, 312, 453, 534, 569, 595, 612, 629
SsiI	CCGC	3 cut(s)	109, 111, 384
SspI	AATATT	1 cut(s)	585
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	376, 392, 653
TaiI	ACGT	2 cut(s)	183, 518
TaqI	TCGA	2 cut(s)	96, 548
TasI	AATT	8 cut(s)	87, 312, 453, 534, 569, 595, 612, 629
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	5 cut(s)	156, 225, 291, 555, 639
Tru9I	TTAA	5 cut(s)	156, 225, 291, 555, 639
TscAI	CASTG	2 cut(s)	379, 471
TseFI	GTSAC	2 cut(s)	176, 647
TseI	GCWGC	3 cut(s)	247, 401, 473
Tsp45I	GTSAC	2 cut(s)	176, 647
TspDTI	ATGAA	4 cut(s)	409, 582, 594, 606
TspRI	CASTG	2 cut(s)	379, 471
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	104
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	2 cut(s)	569, 595
ZrmI	AGTACT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.