pycom05g19000

pfkB family carbohydrate kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
21929705 .. 21932340
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19000.5

Sequence Viewer

Length: 1473 bp
ATGCATTACTGCACTATAACCCTGAAACCCCCAATCCCACACCATGTATCCTCCACTCACTCCCACCTGATATTTCCCCACAGCCCGAGGCTGACCCAATCCCAATCCCCCCTCATTTTCGCGCCAGTTTACGTTCGCCCCCGTTCCGTCTCCAACCGCACCGCCAGAGCGCTCGATGTTTCCGTCTCCAAACACTCCCCTAACTCTAGCGCCCCCAATGGCTCCGTGCACGATTGGAAGCCAAAGAGCGTCGGCGTTAAAAACGTAGATGTTGCCACTCTCGGCAATCTCTGCGTGGATATCGTCCTCAGTGTGCCCAAATTACCCCCGCCCGATGTCCGCGACCGCAAAGCTTACATGGACCTGTTATCCGCCTCCCCGCCGGATAAGCAATACTGGGAAGCTGGTGGAAACTGCAATATGGCCATAGCAGCTGCAAGACTAGGACTTCATTGCATCGCGATTGGGCATGTGGGTAACGAAGTATATGGACAGTTCCTTTTAGATGTTCTTCAAGATGAAGGAATTAGAATGGTTGGAATGAGTGACAACAATACCAATGTTGACAGTTCAGCTGCATCATATGAAACACTTTTGTGCTGGGTTCTCGTCGATCCATTGCAAAGACATGGTTTTTGCAGCCGAGCTGATTTCAGTAAGGAGCCTGCATTCAGTTGGATGAGCAAATTATCTGCACAAGTAAAGACTGCTATAAAACAGTCAAAGATTCTGTTCTGCAATGGTTATGGCTTTGATGAACTCTCTCCGGGTGTAATAGCTGCAGCTGTAGAGTATGCCGTCGAAGTTGGTACATCAATTTTCTTCGACCCTGGACCACGTGGTAAAAGCCTTTCTGCTGGTACAACAGAAGAACGCGAAGCACTTAACCTGTTGTTGAGGATGAGTGATGTTCTTCTTCTAACTTCTGATGAGGCTGAGTCATTGACGGGCATTAAAAACCCAGTATTAGCAGGGCAGGAGCTGCTCAAGCAAGGGGTGCTCACAAAATGGGTGATTGTCAAAATGGGTCCAAGGGGTTCAATTCTAATAACCAGGTCAAGTATTTCTTGCGCACCAGCGTTTGAGGTAAATGTCGTAGACACTGTTGGGTGTGGAGATAGTTTCGTGGCTGCGATTGCGTATGGTTTTATCCACAATATGCCGAAGGTTAACACATTAGCAGTTGCAAATGCTGTAGGTGCTGCAACCGCCACAGGTTGTGGTGCCGGTAGGAATGTGGCAACCTTGGAGAAAGTAATAGAACTTATAAGTGCATCTAATCTCAAGCAGAATGACAAATTTTGGAATGAGTTAATTGATGAAAATTTTGGTGTCGATGAAATTACATCTCTCTCAAATTTGGTCGTAGATGGAAGTGACAACCGGTTAAATTGTGTATCCTTGCAGAAGGTGGTATCCGAATTGCTTCCTAAGCTTAAATCTGCACAGTTAGAAAGAAAAGTGCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

52.76

Weight (kDa)

6.64

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1268
Acc16I TGCGCA 1 cut(s) 1072
AccB1I GGYRCC 1 cut(s) 1223
AccI GTMKAC 1 cut(s) 1098
AccII CGCG 4 cut(s) 122, 342, 461, 876
AciI CCGC 8 cut(s) 157, 162, 329, 340, 346, 372, 380, 1209
AclWI GGATC 1 cut(s) 608
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 3 cut(s) 1298, 1324, 1357
AcvI CACGTG 1 cut(s) 839
AfaI GTAC 2 cut(s) 811, 862
AfeI AGCGCT 1 cut(s) 171
AgeI ACCGGT 1 cut(s) 1383
AgsI TTSAA 2 cut(s) 515, 1041
AjnI CCWGG 2 cut(s) 829, 1052
AleI CACNNNNGTG 1 cut(s) 595
AluBI AGCT 9 cut(s) 353, 404, 434, 575, 647, 779, 785, 982, 1435
AluI AGCT 9 cut(s) 353, 404, 434, 575, 647, 779, 785, 982, 1435
Alw21I GWGCWC 2 cut(s) 231, 1002
Alw26I GTCTC 2 cut(s) 154, 190
Alw44I GTGCAC 1 cut(s) 227
AlwI GGATC 1 cut(s) 608
AlwNI CAGNNNCTG 1 cut(s) 982
Ama87I CYCGRG 1 cut(s) 85
Aor51HI AGCGCT 1 cut(s) 171
AoxI GGCC 1 cut(s) 423
ApaLI GTGCAC 1 cut(s) 227
ApeKI GCWGC 9 cut(s) 431, 434, 575, 639, 779, 782, 982, 1130, 1202
ApoI RAATTY 3 cut(s) 1298, 1324, 1357
ArsI GACNNNNNNTTYG 2 cut(s) 618, 650
AsiGI ACCGGT 1 cut(s) 1383
Asp700I GAANNNNTTC 1 cut(s) 1425
AspLEI GCGC 4 cut(s) 124, 172, 212, 1073
AspS9I GGNCC 3 cut(s) 361, 833, 1028
AsuC2I CCSGG 1 cut(s) 768
AsuHPI GGTGA 1 cut(s) 1024
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 3 cut(s) 361, 833, 1028
BaeGI GKGCMC 2 cut(s) 231, 318
BalI TGGCCA 1 cut(s) 425
BanI GGYRCC 1 cut(s) 1223
BbrPI CACGTG 1 cut(s) 839
Bbv12I GWGCWC 2 cut(s) 231, 1002
BbvI GCAGC 9 cut(s) 421, 443, 562, 651, 766, 794, 969, 1117, 1189
BccI CCATC 1 cut(s) 1364
BceAI ACGGC 1 cut(s) 782
BciT130I CCWGG 2 cut(s) 831, 1054
BciVI GTATCC 3 cut(s) 58, 1408, 1426
BcnI CCSGG 1 cut(s) 768
BcoDI GTCTC 2 cut(s) 154, 190
BfaI CTAG 2 cut(s) 207, 443
BfmI CTRYAG 3 cut(s) 780, 786, 1194
BfoI RGCGCY 2 cut(s) 173, 213
BfuI GTATCC 3 cut(s) 58, 1408, 1426
BisI GCNGC 9 cut(s) 432, 435, 576, 640, 780, 783, 983, 1131, 1203
BlsI GCNGC 9 cut(s) 433, 436, 577, 641, 781, 784, 984, 1132, 1204
Bme1390I CCNGG 3 cut(s) 768, 831, 1054
Bme18I GGWCC 3 cut(s) 361, 833, 1028
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 3 cut(s) 361, 833, 1028
BmiI GGNNCC 4 cut(s) 223, 663, 1029, 1225
BmrFI CCNGG 3 cut(s) 768, 831, 1054
BmrI ACTGGG 2 cut(s) 406, 956
BmsI GCATC 3 cut(s) 465, 587, 1283
BmuI ACTGGG 2 cut(s) 406, 956
Bpu10I CCTNAGC 1 cut(s) 1431
BpuEI CTTGAG 2 cut(s) 971, 1268
BpuMI CCSGG 1 cut(s) 768
BsaAI YACGTR 1 cut(s) 839
BsaJI CCNNGG 4 cut(s) 86, 829, 1031, 1245
BsaWI WCCGGW 1 cut(s) 1383
Bse118I RCCGGY 2 cut(s) 1226, 1383
Bse1I ACTGG 3 cut(s) 125, 401, 962
Bse3DI GCAATG 3 cut(s) 451, 617, 745
BseBI CCWGG 2 cut(s) 831, 1054
BseDI CCNNGG 4 cut(s) 86, 829, 1031, 1245
BseGI GGATG 2 cut(s) 684, 906
BseMI GCAATG 3 cut(s) 451, 617, 745
BseMII CTCAG 2 cut(s) 322, 927
BseNI ACTGG 3 cut(s) 125, 401, 962
BseSI GKGCMC 2 cut(s) 231, 318
BseXI GCAGC 9 cut(s) 421, 443, 562, 651, 766, 794, 969, 1117, 1189
BseYI CCCAGC 1 cut(s) 600
BsgI GTGCAG 2 cut(s) 678, 1428
Bsh1236I CGCG 4 cut(s) 122, 342, 461, 876
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 425
BshNI GGYRCC 1 cut(s) 1223
BshTI ACCGGT 1 cut(s) 1383
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 2 cut(s) 231, 1002
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 4 cut(s) 383, 767, 1227, 1384
BsmAI GTCTC 2 cut(s) 154, 190
BsmBI CGTCTC 2 cut(s) 154, 190
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 1 cut(s) 425
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 3 cut(s) 231, 318, 1002
Bsp143I GATC 1 cut(s) 613
Bsp68I TCGCGA 1 cut(s) 461
BspACI CCGC 8 cut(s) 157, 162, 329, 340, 346, 372, 380, 1209
BspANI GGCC 1 cut(s) 425
BspCNI CTCAG 2 cut(s) 321, 928
BspFNI CGCG 4 cut(s) 122, 342, 461, 876
BspLI GGNNCC 4 cut(s) 223, 663, 1029, 1225
BspMAI CTGCAG 1 cut(s) 784
BspPI GGATC 1 cut(s) 608
BspT107I GGYRCC 1 cut(s) 1223
BsrDI GCAATG 3 cut(s) 451, 617, 745
BsrFI RCCGGY 2 cut(s) 1226, 1383
BsrI ACTGG 3 cut(s) 125, 401, 962
BssAI RCCGGY 2 cut(s) 1226, 1383
BssECI CCNNGG 4 cut(s) 86, 829, 1031, 1245
BssMI GATC 1 cut(s) 613
BssT1I CCWWGG 2 cut(s) 1031, 1245
Bst2UI CCWGG 2 cut(s) 831, 1054
Bst4CI ACNGT 5 cut(s) 495, 569, 720, 1105, 1449
BstAPI GCANNNNNTGC 3 cut(s) 291, 982, 997
BstBAI YACGTR 1 cut(s) 839
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 3 cut(s) 308, 936, 1431
BstF5I GGATG 2 cut(s) 684, 906
BstFNI CGCG 4 cut(s) 122, 342, 461, 876
BstH2I RGCGCY 2 cut(s) 173, 213
BstHHI GCGC 4 cut(s) 124, 172, 212, 1073
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 2 cut(s) 154, 190
BstMBI GATC 1 cut(s) 613
BstMCI CGRYCG 1 cut(s) 346
BstNI CCWGG 2 cut(s) 831, 1054
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 3 cut(s) 766, 829, 1052
BstSFI CTRYAG 3 cut(s) 780, 786, 1194
BstSLI GKGCMC 2 cut(s) 231, 318
BstUI CGCG 4 cut(s) 122, 342, 461, 876
BstV1I GCAGC 9 cut(s) 421, 443, 562, 651, 766, 794, 969, 1117, 1189
BsuI GTATCC 3 cut(s) 58, 1408, 1426
BsuRI GGCC 1 cut(s) 425
BtgZI GCGATG 1 cut(s) 442
BtsCI GGATG 2 cut(s) 684, 906
BtsIMutI CAGTG 2 cut(s) 316, 1101
BtuMI TCGCGA 1 cut(s) 461
Cac8I GCNNGC 1 cut(s) 666
CaiI CAGNNNCTG 1 cut(s) 982
CfoI GCGC 4 cut(s) 124, 172, 212, 1073
Cfr10I RCCGGY 2 cut(s) 1226, 1383
Cfr13I GGNCC 3 cut(s) 361, 833, 1028
CseI GACGC 1 cut(s) 238
CsiI ACCWGGT 1 cut(s) 1052
Csp6I GTAC 2 cut(s) 810, 861
CspAI ACCGGT 1 cut(s) 1383
CviAII CATG 4 cut(s) 44, 358, 470, 629
CviQI GTAC 2 cut(s) 810, 861
DdeI CTNAG 3 cut(s) 308, 936, 1431
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 423
EciI GGCGGA 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 1031, 1245
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 3 cut(s) 361, 833, 1028
Eco47III AGCGCT 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 839
Eco88I CYCGRG 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 829, 1052
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 2 cut(s) 1031, 1245
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 1031, 1245
Esp3I CGTCTC 2 cut(s) 154, 190
FaeI CATG 4 cut(s) 47, 361, 473, 632
FalI AAGNNNNNCTT 2 cut(s) 1051, 1083
FatI CATG 4 cut(s) 43, 357, 469, 628
FauI CCCGC 2 cut(s) 336, 387
FauNDI CATATG 1 cut(s) 583
FblI GTMKAC 1 cut(s) 1098
Fnu4HI GCNGC 9 cut(s) 432, 435, 576, 640, 780, 783, 983, 1131, 1203
FokI GGATG 2 cut(s) 691, 913
Fsp4HI GCNGC 9 cut(s) 432, 435, 576, 640, 780, 783, 983, 1131, 1203
FspBI CTAG 2 cut(s) 207, 443
FspI TGCGCA 1 cut(s) 1072
GlaI GCGC 4 cut(s) 123, 171, 211, 1072
GluI GCNGC 9 cut(s) 432, 435, 576, 640, 780, 783, 983, 1131, 1203
GsaI CCCAGC 1 cut(s) 604
HaeII RGCGCY 2 cut(s) 173, 213
HaeIII GGCC 1 cut(s) 425
HapII CCGG 4 cut(s) 383, 767, 1227, 1384
HgaI GACGC 1 cut(s) 238
HhaI GCGC 4 cut(s) 124, 172, 212, 1073
Hin1II CATG 4 cut(s) 47, 361, 473, 632
Hin6I GCGC 4 cut(s) 122, 170, 210, 1071
HinP1I GCGC 4 cut(s) 122, 170, 210, 1071
HincII GTYRAC 2 cut(s) 565, 1171
HindII GTYRAC 2 cut(s) 565, 1171
HindIII AAGCTT 2 cut(s) 351, 1433
HinfI GANTC 2 cut(s) 727, 938
HpaI GTTAAC 1 cut(s) 1171
HpaII CCGG 4 cut(s) 383, 767, 1227, 1384
HphI GGTGA 1 cut(s) 1024
Hpy166II GTNNAC 5 cut(s) 130, 229, 565, 1099, 1171
Hpy188I TCNGA 2 cut(s) 928, 1420
Hpy188III TCNNGA 2 cut(s) 460, 515
Hpy8I GTNNAC 5 cut(s) 130, 229, 565, 1099, 1171
Hpy99I CGWCG 3 cut(s) 254, 614, 803
HpyAV CCTTC 3 cut(s) 515, 1159, 1402
HpyCH4III ACNGT 5 cut(s) 495, 569, 720, 1105, 1449
HpyCH4IV ACGT 3 cut(s) 132, 264, 838
HpyF3I CTNAG 3 cut(s) 308, 936, 1431
HpySE526I ACGT 3 cut(s) 132, 264, 838
Hsp92II CATG 4 cut(s) 47, 361, 473, 632
HspAI GCGC 4 cut(s) 122, 170, 210, 1071
KspAI GTTAAC 1 cut(s) 1171
Kzo9I GATC 1 cut(s) 613
LmnI GCTCC 3 cut(s) 227, 661, 979
Lsp1109I GCAGC 9 cut(s) 421, 443, 562, 651, 766, 794, 969, 1117, 1189
LweI GCATC 3 cut(s) 465, 587, 1283
MabI ACCWGGT 1 cut(s) 1052
MaeI CTAG 2 cut(s) 207, 443
MaeII ACGT 3 cut(s) 132, 264, 838
MaeIII GTNAC 3 cut(s) 476, 545, 1376
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MboII GAAGA 5 cut(s) 503, 814, 881, 905, 908
MhlI GDGCHC 3 cut(s) 231, 318, 1002
MlsI TGGCCA 1 cut(s) 425
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 1 cut(s) 947
MmeI TCCRAC 3 cut(s) 177, 517, 656
MnlI CCTC 8 cut(s) 61, 81, 122, 317, 385, 891, 925, 1078
Mox20I TGGCCA 1 cut(s) 425
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 1425
MscI TGGCCA 1 cut(s) 425
MseI TTAA 7 cut(s) 258, 885, 954, 1170, 1313, 1388, 1437
MslI CAYNNNNRTG 1 cut(s) 595
Msp20I TGGCCA 1 cut(s) 425
MspA1I CMGCKG 3 cut(s) 434, 575, 785
MspI CCGG 4 cut(s) 383, 767, 1227, 1384
MspR9I CCNGG 3 cut(s) 768, 831, 1054
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 2 cut(s) 831, 1054
MvnI CGCG 4 cut(s) 122, 342, 461, 876
NciI CCSGG 1 cut(s) 768
NdeI CATATG 1 cut(s) 583
NdeII GATC 1 cut(s) 613
NlaIII CATG 4 cut(s) 47, 361, 473, 632
NlaIV GGNNCC 4 cut(s) 223, 663, 1029, 1225
NmeAIII GCCGAG 2 cut(s) 261, 668
NmuCI GTSAC 2 cut(s) 545, 1376
NruI TCGCGA 1 cut(s) 461
NsbI TGCGCA 1 cut(s) 1072
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 473
OliI CACNNNNGTG 1 cut(s) 595
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 668
PdmI GAANNNNTTC 1 cut(s) 1425
PfeI GAWTC 1 cut(s) 727
PinAI ACCGGT 1 cut(s) 1383
PkrI GCNGC 9 cut(s) 433, 436, 577, 641, 781, 784, 984, 1132, 1204
PleI GAGTC 1 cut(s) 946
PmaCI CACGTG 1 cut(s) 839
PmlI CACGTG 1 cut(s) 839
PpsI GAGTC 1 cut(s) 946
Ppu21I YACGTR 1 cut(s) 839
PsiI TTATAA 1 cut(s) 1268
Psp6I CCWGG 2 cut(s) 829, 1052
PspCI CACGTG 1 cut(s) 839
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 2 cut(s) 829, 1052
PspN4I GGNNCC 4 cut(s) 223, 663, 1029, 1225
PspPI GGNCC 3 cut(s) 361, 833, 1028
PstI CTGCAG 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 982
PvuII CAGCTG 3 cut(s) 434, 575, 785
RruI TCGCGA 1 cut(s) 461
RsaI GTAC 2 cut(s) 811, 862
RsaNI GTAC 2 cut(s) 810, 861
RseI CAYNNNNRTG 1 cut(s) 595
SaqAI TTAA 7 cut(s) 258, 885, 954, 1170, 1313, 1388, 1437
SatI GCNGC 9 cut(s) 432, 435, 576, 640, 780, 783, 983, 1131, 1203
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 3 cut(s) 361, 833, 1028
SchI GAGTC 1 cut(s) 947
ScrFI CCNGG 3 cut(s) 768, 831, 1054
SduI GDGCHC 3 cut(s) 231, 318, 1002
SexAI ACCWGGT 1 cut(s) 1052
SfaNI GCATC 3 cut(s) 465, 587, 1283
SfcI CTRYAG 3 cut(s) 780, 786, 1194
SinI GGWCC 3 cut(s) 361, 833, 1028
SmiMI CAYNNNNRTG 1 cut(s) 595
SmlI CTYRAG 2 cut(s) 986, 1283
SmoI CTYRAG 2 cut(s) 986, 1283
SsiI CCGC 8 cut(s) 157, 162, 329, 340, 346, 372, 380, 1209
SspMI CTAG 2 cut(s) 207, 443
StyD4I CCNGG 3 cut(s) 766, 829, 1052
StyI CCWWGG 2 cut(s) 1031, 1245
TaaI ACNGT 5 cut(s) 495, 569, 720, 1105, 1449
TaiI ACGT 3 cut(s) 135, 267, 841
TaqI TCGA 5 cut(s) 174, 612, 801, 825, 1335
TfiI GAWTC 1 cut(s) 727
Tru1I TTAA 7 cut(s) 258, 885, 954, 1170, 1313, 1388, 1437
Tru9I TTAA 7 cut(s) 258, 885, 954, 1170, 1313, 1388, 1437
TscAI CASTG 2 cut(s) 316, 1108
TseFI GTSAC 2 cut(s) 545, 1376
TseI GCWGC 9 cut(s) 431, 434, 575, 639, 779, 782, 982, 1130, 1202
Tsp45I GTSAC 2 cut(s) 545, 1376
TspDTI ATGAA 6 cut(s) 440, 534, 600, 771, 1335, 1353
TspGWI ACGGA 3 cut(s) 136, 172, 214
TspRI CASTG 2 cut(s) 316, 1108
VneI GTGCAC 1 cut(s) 227
VpaK11BI GGWCC 3 cut(s) 361, 833, 1028
XapI RAATTY 3 cut(s) 1298, 1324, 1357
XceI RCATGY 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 1098
XmnI GAANNNNTTC 1 cut(s) 1425
XspI CTAG 2 cut(s) 207, 443
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.