CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62900 AT3G62900 AT3G62900 |
| fragaria_vesca | FvH4_2g25070 |
| malus_domestica | MD03G1282000.v1.1 MD11G1301800.v1.1 |
| prunus_persica | Prupe.8G255400_v2.0.a1 |
| pyrus_communis | pycom03g22260 pycom03g22270 pycom03g22280 pycom11g26440 |
| rosa_chinensis | RchiOBHm_Chr6g0293091 |
| rosa_laevigata | RLG00000011972 |
| rosa_multiflora | Rmu_sc0001042.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00174420 |
| rosa_rugosa | Rorug06G0232700 |
| rosa_samantha | Rh6AG345500 Rh6BG353300 Rh6CG359700 Rh6DG345600 |
| rosa_wichuraiana | Rw6G030110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3588 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3516 |
| Acc36I | ACCTGC | 1 cut(s) | 4010 |
| Acc65I | GGTACC | 1 cut(s) | 2003 |
| AccB1I | GGYRCC | 3 cut(s) | 466, 2003, 2214 |
| AccB7I | CCANNNNNTGG | 6 cut(s) | 887, 1898, 3734, 4058, 4103, 5045 |
| AccI | GTMKAC | 1 cut(s) | 626 |
| AccII | CGCG | 1 cut(s) | 3932 |
| AccIII | TCCGGA | 2 cut(s) | 3460, 4824 |
| AciI | CCGC | 6 cut(s) | 283, 1987, 3025, 4183, 4409, 4734 |
| AclI | AACGTT | 1 cut(s) | 1097 |
| AclWI | GGATC | 4 cut(s) | 122, 2552, 3073, 4272 |
| AcoI | YGGCCR | 2 cut(s) | 373, 1345 |
| AcuI | CTGAAG | 7 cut(s) | 681, 837, 1782, 2384, 2712, 3369, 4173 |
| AflII | CTTAAG | 2 cut(s) | 1772, 2711 |
| AgeI | ACCGGT | 1 cut(s) | 2070 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 777, 4086 |
| AhlI | ACTAGT | 2 cut(s) | 752, 3538 |
| AjiI | CACGTC | 1 cut(s) | 499 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3479, 3511 |
| Alw21I | GWGCWC | 4 cut(s) | 2578, 4069, 4243, 4528 |
| Alw26I | GTCTC | 9 cut(s) | 291, 303, 1321, 1822, 3222, 3606, 3921, 4105, 4629 |
| Alw44I | GTGCAC | 1 cut(s) | 4239 |
| AlwI | GGATC | 4 cut(s) | 122, 2552, 3073, 4272 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1922, 3962, 4103, 4901 |
| Ama87I | CYCGRG | 1 cut(s) | 365 |
| Aor13HI | TCCGGA | 2 cut(s) | 3460, 4824 |
| ApaI | GGGCCC | 1 cut(s) | 1679 |
| ApaLI | GTGCAC | 1 cut(s) | 4239 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1438, 1470, 3233, 3265 |
| AseI | ATTAAT | 2 cut(s) | 1943, 5061 |
| AsiGI | ACCGGT | 1 cut(s) | 2070 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 430, 3991, 4294 |
| Asp718I | GGTACC | 1 cut(s) | 2003 |
| AspA2I | CCTAGG | 1 cut(s) | 4259 |
| AspLEI | GCGC | 2 cut(s) | 460, 1802 |
| AsuC2I | CCSGG | 2 cut(s) | 3361, 4307 |
| AvaI | CYCGRG | 1 cut(s) | 365 |
| AvaII | GGWCC | 6 cut(s) | 1432, 1901, 2642, 2660, 3509, 4411 |
| AvrII | CCTAGG | 1 cut(s) | 4259 |
| AxyI | CCTNAGG | 3 cut(s) | 462, 3233, 4755 |
| BaeGI | GKGCMC | 2 cut(s) | 1679, 4243 |
| BalI | TGGCCA | 2 cut(s) | 375, 1347 |
| BanI | GGYRCC | 3 cut(s) | 466, 2003, 2214 |
| BanII | GRGCYC | 6 cut(s) | 1679, 1936, 2415, 2578, 4069, 4951 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 661, 693 |
| BbsI | GAAGAC | 5 cut(s) | 1956, 2111, 3570, 3969, 4683 |
| Bbv12I | GWGCWC | 4 cut(s) | 2578, 4069, 4243, 4528 |
| BceAI | ACGGC | 1 cut(s) | 5012 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1052, 1086 |
| BciVI | GTATCC | 2 cut(s) | 540, 1687 |
| BclI | TGATCA | 1 cut(s) | 2221 |
| BcnI | CCSGG | 2 cut(s) | 3361, 4307 |
| BcoDI | GTCTC | 9 cut(s) | 291, 303, 1321, 1822, 3222, 3606, 3921, 4105, 4629 |
| BcuI | ACTAGT | 2 cut(s) | 752, 3538 |
| BfmI | CTRYAG | 6 cut(s) | 646, 996, 1699, 2884, 3162, 4503 |
| BfrI | CTTAAG | 2 cut(s) | 1772, 2711 |
| BfuAI | ACCTGC | 1 cut(s) | 4010 |
| BfuI | GTATCC | 2 cut(s) | 540, 1687 |
| BglII | AGATCT | 2 cut(s) | 866, 899 |
| BlnI | CCTAGG | 1 cut(s) | 4259 |
| BmcAI | AGTACT | 2 cut(s) | 1420, 3390 |
| Bme18I | GGWCC | 6 cut(s) | 1432, 1901, 2642, 2660, 3509, 4411 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 777, 4086 |
| BmeT110I | CYCGRG | 1 cut(s) | 365 |
| BmgBI | CACGTC | 1 cut(s) | 499 |
| BmrI | ACTGGG | 1 cut(s) | 1258 |
| BmuI | ACTGGG | 1 cut(s) | 1258 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1974 |
| BpiI | GAAGAC | 5 cut(s) | 1956, 2111, 3570, 3969, 4683 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1396, 1428 |
| BpmI | CTGGAG | 5 cut(s) | 273, 297, 746, 1570, 4080 |
| BpuEI | CTTGAG | 3 cut(s) | 711, 1687, 2653 |
| BpuMI | CCSGG | 2 cut(s) | 3361, 4307 |
| Bsa29I | ATCGAT | 3 cut(s) | 165, 1062, 3325 |
| BsaBI | GATNNNNATC | 3 cut(s) | 150, 528, 1857 |
| BsaI | GGTCTC | 6 cut(s) | 291, 303, 1321, 3222, 3606, 4629 |
| BsaWI | WCCGGW | 4 cut(s) | 781, 2070, 3460, 4824 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1918, 1948, 3854, 3884 |
| Bse118I | RCCGGY | 2 cut(s) | 1592, 2070 |
| Bse21I | CCTNAGG | 3 cut(s) | 462, 3233, 4755 |
| Bse3DI | GCAATG | 3 cut(s) | 1745, 4794, 4866 |
| Bse8I | GATNNNNATC | 3 cut(s) | 150, 528, 1857 |
| BseAI | TCCGGA | 2 cut(s) | 3460, 4824 |
| BseCI | ATCGAT | 3 cut(s) | 165, 1062, 3325 |
| BseJI | GATNNNNATC | 3 cut(s) | 150, 528, 1857 |
| BseMI | GCAATG | 3 cut(s) | 1745, 4794, 4866 |
| BseRI | GAGGAG | 4 cut(s) | 69, 2102, 4077, 4603 |
| BseSI | GKGCMC | 2 cut(s) | 1679, 4243 |
| BseYI | CCCAGC | 1 cut(s) | 3829 |
| BsgI | GTGCAG | 3 cut(s) | 1982, 2124, 4647 |
| Bsh1236I | CGCG | 1 cut(s) | 3932 |
| BshNI | GGYRCC | 3 cut(s) | 466, 2003, 2214 |
| BshTI | ACCGGT | 1 cut(s) | 2070 |
| BshVI | ATCGAT | 3 cut(s) | 165, 1062, 3325 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2578, 4069, 4243, 4528 |
| BsiHKCI | CYCGRG | 1 cut(s) | 365 |
| BsiSI | CCGG | 8 cut(s) | 782, 1593, 2071, 3360, 3461, 3770, 4307, 4825 |
| BslFI | GGGAC | 7 cut(s) | 204, 432, 2564, 3346, 3456, 4074, 4797 |
| BsmAI | GTCTC | 9 cut(s) | 291, 303, 1321, 1822, 3222, 3606, 3921, 4105, 4629 |
| BsmBI | CGTCTC | 1 cut(s) | 3921 |
| BsmFI | GGGAC | 7 cut(s) | 204, 432, 2564, 3346, 3456, 4074, 4797 |
| BsmI | GAATGC | 2 cut(s) | 4618, 4931 |
| Bso31I | GGTCTC | 6 cut(s) | 291, 303, 1321, 3222, 3606, 4629 |
| BsoBI | CYCGRG | 1 cut(s) | 365 |
| Bsp120I | GGGCCC | 1 cut(s) | 1675 |
| Bsp1286I | GDGCHC | 8 cut(s) | 1679, 1936, 2415, 2578, 4069, 4243, 4528, 4951 |
| Bsp13I | TCCGGA | 2 cut(s) | 3460, 4824 |
| Bsp1407I | TGTACA | 1 cut(s) | 4849 |
| BspACI | CCGC | 6 cut(s) | 283, 1987, 3025, 4183, 4409, 4734 |
| BspDI | ATCGAT | 3 cut(s) | 165, 1062, 3325 |
| BspEI | TCCGGA | 2 cut(s) | 3460, 4824 |
| BspFNI | CGCG | 1 cut(s) | 3932 |
| BspHI | TCATGA | 4 cut(s) | 718, 1288, 2824, 4528 |
| BspMAI | CTGCAG | 2 cut(s) | 1000, 4507 |
| BspMI | ACCTGC | 1 cut(s) | 4010 |
| BspPI | GGATC | 4 cut(s) | 122, 2552, 3073, 4272 |
| BspQI | GCTCTTC | 2 cut(s) | 1074, 3106 |
| BspT107I | GGYRCC | 3 cut(s) | 466, 2003, 2214 |
| BspTI | CTTAAG | 2 cut(s) | 1772, 2711 |
| BspTNI | GGTCTC | 6 cut(s) | 291, 303, 1321, 3222, 3606, 4629 |
| BsrDI | GCAATG | 3 cut(s) | 1745, 4794, 4866 |
| BsrFI | RCCGGY | 2 cut(s) | 1592, 2070 |
| BsrGI | TGTACA | 1 cut(s) | 4849 |
| BssAI | RCCGGY | 2 cut(s) | 1592, 2070 |
| BssT1I | CCWWGG | 3 cut(s) | 881, 1550, 4259 |
| Bst4CI | ACNGT | 6 cut(s) | 356, 668, 2491, 2846, 2885, 3639 |
| BstAFI | CTTAAG | 2 cut(s) | 1772, 2711 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1922 |
| BstAUI | TGTACA | 1 cut(s) | 4849 |
| BstC8I | GCNNGC | 6 cut(s) | 1075, 2045, 2250, 2941, 4630, 5001 |
| BstDSI | CCRYGG | 1 cut(s) | 2638 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1926 |
| BstFNI | CGCG | 1 cut(s) | 3932 |
| BstHHI | GCGC | 2 cut(s) | 460, 1802 |
| BstMAI | GTCTC | 9 cut(s) | 291, 303, 1321, 1822, 3222, 3606, 3921, 4105, 4629 |
| BstNSI | RCATGY | 3 cut(s) | 1631, 2047, 2252 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1974 |
| BstSFI | CTRYAG | 6 cut(s) | 646, 996, 1699, 2884, 3162, 4503 |
| BstSLI | GKGCMC | 2 cut(s) | 1679, 4243 |
| BstUI | CGCG | 1 cut(s) | 3932 |
| BstV2I | GAAGAC | 5 cut(s) | 1956, 2111, 3570, 3969, 4683 |
| BstX2I | RGATCY | 4 cut(s) | 866, 899, 3065, 4264 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 2031, 2240, 2446, 4552, 4781 |
| BstYI | RGATCY | 4 cut(s) | 866, 899, 3065, 4264 |
| Bsu15I | ATCGAT | 3 cut(s) | 165, 1062, 3325 |
| Bsu36I | CCTNAGG | 3 cut(s) | 462, 3233, 4755 |
| BsuI | GTATCC | 2 cut(s) | 540, 1687 |
| BsuTUI | ATCGAT | 3 cut(s) | 165, 1062, 3325 |
| BtgI | CCRYGG | 1 cut(s) | 2638 |
| BtgZI | GCGATG | 1 cut(s) | 1334 |
| BtrI | CACGTC | 1 cut(s) | 499 |
| BtsI | GCAGTG | 6 cut(s) | 1970, 2457, 2862, 2956, 4040, 4500 |
| BveI | ACCTGC | 1 cut(s) | 4010 |
| Cac8I | GCNNGC | 6 cut(s) | 1075, 2045, 2250, 2941, 4630, 5001 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1922, 3962, 4103, 4901 |
| CciI | TCATGA | 4 cut(s) | 718, 1288, 2824, 4528 |
| CfoI | GCGC | 2 cut(s) | 460, 1802 |
| Cfr10I | RCCGGY | 2 cut(s) | 1592, 2070 |
| ClaI | ATCGAT | 3 cut(s) | 165, 1062, 3325 |
| CseI | GACGC | 2 cut(s) | 3938, 4874 |
| CspAI | ACCGGT | 1 cut(s) | 2070 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2422, 2457, 2932, 2967 |
| DraI | TTTAAA | 1 cut(s) | 2532 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3516 |
| DriI | GACNNNNNGTC | 2 cut(s) | 777, 4086 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3516 |
| EaeI | YGGCCR | 2 cut(s) | 373, 1345 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 777, 4086 |
| Ecl136II | GAGCTC | 2 cut(s) | 2576, 4067 |
| Eco130I | CCWWGG | 3 cut(s) | 881, 1550, 4259 |
| Eco24I | GRGCYC | 6 cut(s) | 1679, 1936, 2415, 2578, 4069, 4951 |
| Eco31I | GGTCTC | 6 cut(s) | 291, 303, 1321, 3222, 3606, 4629 |
| Eco32I | GATATC | 2 cut(s) | 643, 1060 |
| Eco47I | GGWCC | 6 cut(s) | 1432, 1901, 2642, 2660, 3509, 4411 |
| Eco53kI | GAGCTC | 2 cut(s) | 2576, 4067 |
| Eco57I | CTGAAG | 7 cut(s) | 681, 837, 1782, 2384, 2712, 3369, 4173 |
| Eco81I | CCTNAGG | 3 cut(s) | 462, 3233, 4755 |
| Eco88I | CYCGRG | 1 cut(s) | 365 |
| EcoICRI | GAGCTC | 2 cut(s) | 2576, 4067 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1926 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1675, 1676 |
| EcoRI | GAATTC | 4 cut(s) | 1029, 3018, 3691, 3987 |
| EcoRV | GATATC | 2 cut(s) | 643, 1060 |
| EcoT14I | CCWWGG | 3 cut(s) | 881, 1550, 4259 |
| EcoT22I | ATGCAT | 1 cut(s) | 4931 |
| EcoT38I | GRGCYC | 6 cut(s) | 1679, 1936, 2415, 2578, 4069, 4951 |
| ErhI | CCWWGG | 3 cut(s) | 881, 1550, 4259 |
| Esp3I | CGTCTC | 1 cut(s) | 3921 |
| FaqI | GGGAC | 7 cut(s) | 204, 432, 2564, 3346, 3456, 4074, 4797 |
| FauNDI | CATATG | 1 cut(s) | 1804 |
| FbaI | TGATCA | 1 cut(s) | 2221 |
| FblI | GTMKAC | 1 cut(s) | 626 |
| FriOI | GRGCYC | 6 cut(s) | 1679, 1936, 2415, 2578, 4069, 4951 |
| GlaI | GCGC | 2 cut(s) | 459, 1801 |
| GsaI | CCCAGC | 1 cut(s) | 3833 |
| GsuI | CTGGAG | 5 cut(s) | 273, 297, 746, 1570, 4080 |
| HapII | CCGG | 8 cut(s) | 782, 1593, 2071, 3360, 3461, 3770, 4307, 4825 |
| HgaI | GACGC | 2 cut(s) | 3938, 4874 |
| HhaI | GCGC | 2 cut(s) | 460, 1802 |
| Hin6I | GCGC | 2 cut(s) | 458, 1800 |
| HinP1I | GCGC | 2 cut(s) | 458, 1800 |
| HincII | GTYRAC | 3 cut(s) | 627, 2389, 4711 |
| HindII | GTYRAC | 3 cut(s) | 627, 2389, 4711 |
| HindIII | AAGCTT | 4 cut(s) | 1637, 1663, 1769, 2374 |
| HpaI | GTTAAC | 1 cut(s) | 2389 |
| HpaII | CCGG | 8 cut(s) | 782, 1593, 2071, 3360, 3461, 3770, 4307, 4825 |
| Hpy166II | GTNNAC | 7 cut(s) | 627, 671, 1633, 2389, 3781, 4241, 4711 |
| Hpy8I | GTNNAC | 7 cut(s) | 627, 671, 1633, 2389, 3781, 4241, 4711 |
| HpyCH4III | ACNGT | 6 cut(s) | 356, 668, 2491, 2846, 2885, 3639 |
| HpyCH4IV | ACGT | 3 cut(s) | 498, 1097, 4987 |
| HpySE526I | ACGT | 3 cut(s) | 498, 1097, 4987 |
| HspAI | GCGC | 2 cut(s) | 458, 1800 |
| Kpn2I | TCCGGA | 2 cut(s) | 3460, 4824 |
| KpnI | GGTACC | 1 cut(s) | 2007 |
| Ksp22I | TGATCA | 1 cut(s) | 2221 |
| KspAI | GTTAAC | 1 cut(s) | 2389 |
| LguI | GCTCTTC | 2 cut(s) | 1074, 3106 |
| MaeII | ACGT | 3 cut(s) | 498, 1097, 4987 |
| MfeI | CAATTG | 3 cut(s) | 1751, 1848, 2050 |
| MflI | RGATCY | 4 cut(s) | 866, 899, 3065, 4264 |
| MhlI | GDGCHC | 8 cut(s) | 1679, 1936, 2415, 2578, 4069, 4243, 4528, 4951 |
| MlsI | TGGCCA | 2 cut(s) | 375, 1347 |
| MluNI | TGGCCA | 2 cut(s) | 375, 1347 |
| MmeI | TCCRAC | 1 cut(s) | 1257 |
| Mox20I | TGGCCA | 2 cut(s) | 375, 1347 |
| Mph1103I | ATGCAT | 1 cut(s) | 4931 |
| MroI | TCCGGA | 2 cut(s) | 3460, 4824 |
| MroXI | GAANNNNTTC | 3 cut(s) | 430, 3991, 4294 |
| MscI | TGGCCA | 2 cut(s) | 375, 1347 |
| MslI | CAYNNNNRTG | 3 cut(s) | 3289, 4533, 4623 |
| Msp20I | TGGCCA | 2 cut(s) | 375, 1347 |
| MspA1I | CMGCKG | 3 cut(s) | 283, 3025, 4898 |
| MspCI | CTTAAG | 2 cut(s) | 1772, 2711 |
| MspI | CCGG | 8 cut(s) | 782, 1593, 2071, 3360, 3461, 3770, 4307, 4825 |
| MunI | CAATTG | 3 cut(s) | 1751, 1848, 2050 |
| Mva1269I | GAATGC | 2 cut(s) | 4618, 4931 |
| MvnI | CGCG | 1 cut(s) | 3932 |
| NciI | CCSGG | 2 cut(s) | 3361, 4307 |
| NdeI | CATATG | 1 cut(s) | 1804 |
| NmuCI | GTSAC | 6 cut(s) | 804, 1144, 1967, 3249, 4004, 4038 |
| NsiI | ATGCAT | 1 cut(s) | 4931 |
| NspI | RCATGY | 3 cut(s) | 1631, 2047, 2252 |
| PaeI | GCATGC | 2 cut(s) | 2047, 2252 |
| PaeR7I | CTCGAG | 1 cut(s) | 365 |
| PagI | TCATGA | 4 cut(s) | 718, 1288, 2824, 4528 |
| PciSI | GCTCTTC | 2 cut(s) | 1074, 3106 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4090 |
| PctI | GAATGC | 2 cut(s) | 4618, 4931 |
| PdmI | GAANNNNTTC | 3 cut(s) | 430, 3991, 4294 |
| PflMI | CCANNNNNTGG | 6 cut(s) | 887, 1898, 3734, 4058, 4103, 5045 |
| PfoI | TCCNGGA | 1 cut(s) | 4965 |
| PinAI | ACCGGT | 1 cut(s) | 2070 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1974 |
| PshBI | ATTAAT | 2 cut(s) | 1943, 5061 |
| PsiI | TTATAA | 1 cut(s) | 3588 |
| Psp124BI | GAGCTC | 2 cut(s) | 2578, 4069 |
| Psp1406I | AACGTT | 1 cut(s) | 1097 |
| PspFI | CCCAGC | 1 cut(s) | 3829 |
| PspOMI | GGGCCC | 1 cut(s) | 1675 |
| PspXI | VCTCGAGB | 1 cut(s) | 365 |
| PsrI | GAACNNNNNNTAC | 6 cut(s) | 418, 450, 3372, 3381, 3404, 3413 |
| PstI | CTGCAG | 2 cut(s) | 1000, 4507 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1922, 3962, 4103, 4901 |
| PsuI | RGATCY | 4 cut(s) | 866, 899, 3065, 4264 |
| PvuII | CAGCTG | 1 cut(s) | 4898 |
| RseI | CAYNNNNRTG | 3 cut(s) | 3289, 4533, 4623 |
| SacI | GAGCTC | 2 cut(s) | 2578, 4069 |
| SalI | GTCGAC | 1 cut(s) | 625 |
| SapI | GCTCTTC | 2 cut(s) | 1074, 3106 |
| ScaI | AGTACT | 2 cut(s) | 1420, 3390 |
| SduI | GDGCHC | 8 cut(s) | 1679, 1936, 2415, 2578, 4069, 4243, 4528, 4951 |
| SfcI | CTRYAG | 6 cut(s) | 646, 996, 1699, 2884, 3162, 4503 |
| Sfr274I | CTCGAG | 1 cut(s) | 365 |
| SinI | GGWCC | 6 cut(s) | 1432, 1901, 2642, 2660, 3509, 4411 |
| SlaI | CTCGAG | 1 cut(s) | 365 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 3289, 4533, 4623 |
| SmlI | CTYRAG | 6 cut(s) | 365, 726, 1666, 1772, 2668, 2711 |
| SmoI | CTYRAG | 6 cut(s) | 365, 726, 1666, 1772, 2668, 2711 |
| SpeI | ACTAGT | 2 cut(s) | 752, 3538 |
| SphI | GCATGC | 2 cut(s) | 2047, 2252 |
| SsiI | CCGC | 6 cut(s) | 283, 1987, 3025, 4183, 4409, 4734 |
| SspI | AATATT | 1 cut(s) | 1318 |
| SstI | GAGCTC | 2 cut(s) | 2578, 4069 |
| StyI | CCWWGG | 3 cut(s) | 881, 1550, 4259 |
| TaaI | ACNGT | 6 cut(s) | 356, 668, 2491, 2846, 2885, 3639 |
| TaiI | ACGT | 3 cut(s) | 501, 1100, 4990 |
| TaqII | GACCGA | 3 cut(s) | 2803, 4023, 4653 |
| TatI | WGTACW | 4 cut(s) | 913, 1418, 3388, 4849 |
| TauI | GCSGC | 1 cut(s) | 1990 |
| TseFI | GTSAC | 6 cut(s) | 804, 1144, 1967, 3249, 4004, 4038 |
| Tsp45I | GTSAC | 6 cut(s) | 804, 1144, 1967, 3249, 4004, 4038 |
| TspGWI | ACGGA | 7 cut(s) | 2099, 2476, 2655, 2839, 4677, 5015, 5021 |
| Van91I | CCANNNNNTGG | 6 cut(s) | 887, 1898, 3734, 4058, 4103, 5045 |
| Vha464I | CTTAAG | 2 cut(s) | 1772, 2711 |
| VneI | GTGCAC | 1 cut(s) | 4239 |
| VpaK11BI | GGWCC | 6 cut(s) | 1432, 1901, 2642, 2660, 3509, 4411 |
| VspI | ATTAAT | 2 cut(s) | 1943, 5061 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1926 |
| XbaI | TCTAGA | 1 cut(s) | 2570 |
| XceI | RCATGY | 3 cut(s) | 1631, 2047, 2252 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2645, 3875 |
| XhoI | CTCGAG | 1 cut(s) | 365 |
| XmaJI | CCTAGG | 1 cut(s) | 4259 |
| XmiI | GTMKAC | 1 cut(s) | 626 |
| XmnI | GAANNNNTTC | 3 cut(s) | 430, 3991, 4294 |
| ZrmI | AGTACT | 2 cut(s) | 1420, 3390 |
| Zsp2I | ATGCAT | 1 cut(s) | 4931 |