CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62900 AT3G62900 AT3G62900 |
| fragaria_vesca | FvH4_2g25070 |
| malus_domestica | MD03G1282000.v1.1 MD11G1301800.v1.1 |
| prunus_persica | Prupe.8G255400_v2.0.a1 |
| pyrus_communis | pycom03g22260 pycom03g22270 pycom03g22280 pycom11g26440 |
| rosa_chinensis | RchiOBHm_Chr6g0293091 |
| rosa_laevigata | RLG00000011972 |
| rosa_multiflora | Rmu_sc0001042.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00174420 |
| rosa_rugosa | Rorug06G0232700 |
| rosa_samantha | Rh6AG345500 Rh6BG353300 Rh6CG359700 Rh6DG345600 |
| rosa_wichuraiana | Rw6G030110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 396 |
| Acc36I | ACCTGC | 1 cut(s) | 433 |
| AccB1I | GGYRCC | 1 cut(s) | 463 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1478, 1835, 3908 |
| AccI | GTMKAC | 1 cut(s) | 623 |
| AccII | CGCG | 3 cut(s) | 4212, 4358, 4865 |
| AccIII | TCCGGA | 1 cut(s) | 4677 |
| AciI | CCGC | 8 cut(s) | 224, 280, 311, 1930, 2878, 4259, 4356, 4415 |
| AclI | AACGTT | 1 cut(s) | 4586 |
| AclWI | GGATC | 7 cut(s) | 473, 616, 916, 2495, 2712, 2844, 3070 |
| AfaI | GTAC | 9 cut(s) | 527, 1476, 2072, 2417, 3069, 3219, 4165, 4240, 4857 |
| AfeI | AGCGCT | 1 cut(s) | 2444 |
| AflII | CTTAAG | 1 cut(s) | 1697 |
| AflIII | ACRYGT | 1 cut(s) | 1017 |
| AjnI | CCWGG | 9 cut(s) | 1150, 1477, 1953, 2002, 2116, 3399, 4109, 4155, 4528 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 451, 483, 908, 940, 3041, 3073 |
| Alw21I | GWGCWC | 2 cut(s) | 3293, 4381 |
| Alw26I | GTCTC | 7 cut(s) | 288, 300, 1750, 2343, 2487, 3175, 3355 |
| Alw44I | GTGCAC | 1 cut(s) | 4377 |
| AlwI | GGATC | 7 cut(s) | 473, 616, 916, 2495, 2712, 2844, 3070 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1478 |
| Ama87I | CYCGRG | 1 cut(s) | 3590 |
| Aor13HI | TCCGGA | 1 cut(s) | 4677 |
| Aor51HI | AGCGCT | 1 cut(s) | 2444 |
| AoxI | GGCC | 7 cut(s) | 1300, 1844, 3372, 3528, 3739, 4107, 4422 |
| ApaI | GGGCCC | 1 cut(s) | 3376 |
| ApaLI | GTGCAC | 1 cut(s) | 4377 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3244, 3276 |
| AseI | ATTAAT | 2 cut(s) | 509, 564 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3685 |
| AspLEI | GCGC | 2 cut(s) | 1567, 2445 |
| AsuC2I | CCSGG | 1 cut(s) | 4225 |
| AvaI | CYCGRG | 1 cut(s) | 3590 |
| AvaII | GGWCC | 5 cut(s) | 422, 574, 1390, 1512, 3226 |
| BaeGI | GKGCMC | 4 cut(s) | 1583, 3376, 4104, 4381 |
| BanI | GGYRCC | 1 cut(s) | 463 |
| BanII | GRGCYC | 3 cut(s) | 1879, 3376, 4813 |
| BbsI | GAAGAC | 3 cut(s) | 1138, 3375, 4221 |
| Bbv12I | GWGCWC | 2 cut(s) | 3293, 4381 |
| BceAI | ACGGC | 4 cut(s) | 1827, 2834, 4866, 4874 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4358, 4392 |
| BciT130I | CCWGG | 9 cut(s) | 1152, 1479, 1955, 2004, 2118, 3401, 4111, 4157, 4530 |
| BciVI | GTATCC | 4 cut(s) | 67, 1479, 1612, 3458 |
| BclI | TGATCA | 1 cut(s) | 1606 |
| BcnI | CCSGG | 1 cut(s) | 4225 |
| BcoDI | GTCTC | 7 cut(s) | 288, 300, 1750, 2343, 2487, 3175, 3355 |
| BfaI | CTAG | 6 cut(s) | 18, 1071, 2199, 2514, 2928, 4128 |
| BfmI | CTRYAG | 8 cut(s) | 9, 328, 643, 1731, 2578, 2637, 2817, 3159 |
| BfoI | RGCGCY | 2 cut(s) | 1568, 2446 |
| BfrI | CTTAAG | 1 cut(s) | 1697 |
| BfuAI | ACCTGC | 1 cut(s) | 433 |
| BfuI | GTATCC | 4 cut(s) | 67, 1479, 1612, 3458 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1229 |
| BglII | AGATCT | 1 cut(s) | 4189 |
| BlpI | GCTNAGC | 3 cut(s) | 2372, 4065, 4776 |
| Bme18I | GGWCC | 5 cut(s) | 422, 574, 1390, 1512, 3226 |
| BmeT110I | CYCGRG | 1 cut(s) | 3590 |
| BmrI | ACTGGG | 2 cut(s) | 993, 2460 |
| BmuI | ACTGGG | 2 cut(s) | 993, 2460 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1917 |
| BpiI | GAAGAC | 3 cut(s) | 1138, 3375, 4221 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1354, 1386 |
| BpmI | CTGGAG | 2 cut(s) | 270, 1976 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2145, 4695 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 2372, 4065, 4776 |
| BpuEI | CTTGAG | 5 cut(s) | 383, 711, 1528, 2596, 4517 |
| BpuMI | CCSGG | 1 cut(s) | 4225 |
| Bsa29I | ATCGAT | 3 cut(s) | 135, 162, 3322 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2331 |
| BsaI | GGTCTC | 1 cut(s) | 288 |
| BsaWI | WCCGGW | 3 cut(s) | 3021, 3677, 4677 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1861, 1891, 3335, 3365 |
| Bse3DI | GCAATG | 4 cut(s) | 1303, 2061, 2138, 4719 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2331 |
| BseAI | TCCGGA | 1 cut(s) | 4677 |
| BseBI | CCWGG | 9 cut(s) | 1152, 1479, 1955, 2004, 2118, 3401, 4111, 4157, 4530 |
| BseCI | ATCGAT | 3 cut(s) | 135, 162, 3322 |
| BseJI | GATNNNNATC | 1 cut(s) | 2331 |
| BseMI | GCAATG | 4 cut(s) | 1303, 2061, 2138, 4719 |
| BseRI | GAGGAG | 5 cut(s) | 522, 1046, 2045, 2873, 4456 |
| BseSI | GKGCMC | 4 cut(s) | 1583, 3376, 4104, 4381 |
| BseYI | CCCAGC | 1 cut(s) | 1203 |
| BsgI | GTGCAG | 2 cut(s) | 1866, 4803 |
| Bsh1236I | CGCG | 3 cut(s) | 4212, 4358, 4865 |
| BshFI | GGCC | 7 cut(s) | 1302, 1846, 3374, 3530, 3741, 4109, 4424 |
| BshNI | GGYRCC | 1 cut(s) | 463 |
| BshVI | ATCGAT | 3 cut(s) | 135, 162, 3322 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3293, 4381 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3590 |
| BsiSI | CCGG | 5 cut(s) | 3022, 3678, 4149, 4224, 4678 |
| BslFI | GGGAC | 6 cut(s) | 28, 201, 3239, 3927, 4157, 4650 |
| BsmAI | GTCTC | 7 cut(s) | 288, 300, 1750, 2343, 2487, 3175, 3355 |
| BsmBI | CGTCTC | 1 cut(s) | 300 |
| BsmFI | GGGAC | 6 cut(s) | 28, 201, 3239, 3927, 4157, 4650 |
| BsnI | GGCC | 7 cut(s) | 1302, 1846, 3374, 3530, 3741, 4109, 4424 |
| Bso31I | GGTCTC | 1 cut(s) | 288 |
| BsoBI | CYCGRG | 1 cut(s) | 3590 |
| Bsp120I | GGGCCC | 1 cut(s) | 3372 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1583, 1879, 3293, 3376, 4104, 4381, 4813 |
| Bsp13I | TCCGGA | 1 cut(s) | 4677 |
| Bsp1407I | TGTACA | 1 cut(s) | 3067 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 2372, 4065, 4776 |
| Bsp19I | CCATGG | 1 cut(s) | 882 |
| Bsp68I | TCGCGA | 1 cut(s) | 4865 |
| BspACI | CCGC | 8 cut(s) | 224, 280, 311, 1930, 2878, 4259, 4356, 4415 |
| BspANI | GGCC | 7 cut(s) | 1302, 1846, 3374, 3530, 3741, 4109, 4424 |
| BspDI | ATCGAT | 3 cut(s) | 135, 162, 3322 |
| BspEI | TCCGGA | 1 cut(s) | 4677 |
| BspFNI | CGCG | 3 cut(s) | 4212, 4358, 4865 |
| BspHI | TCATGA | 2 cut(s) | 718, 811 |
| BspMAI | CTGCAG | 3 cut(s) | 332, 1735, 2641 |
| BspMI | ACCTGC | 1 cut(s) | 433 |
| BspPI | GGATC | 7 cut(s) | 473, 616, 916, 2495, 2712, 2844, 3070 |
| BspQI | GCTCTTC | 1 cut(s) | 109 |
| BspT107I | GGYRCC | 1 cut(s) | 463 |
| BspTI | CTTAAG | 1 cut(s) | 1697 |
| BspTNI | GGTCTC | 1 cut(s) | 288 |
| BsrDI | GCAATG | 4 cut(s) | 1303, 2061, 2138, 4719 |
| BsrGI | TGTACA | 1 cut(s) | 3067 |
| BssT1I | CCWWGG | 3 cut(s) | 882, 4398, 4608 |
| Bst2UI | CCWGG | 9 cut(s) | 1152, 1479, 1955, 2004, 2118, 3401, 4111, 4157, 4530 |
| Bst4CI | ACNGT | 9 cut(s) | 647, 1087, 1519, 1742, 2070, 2582, 3358, 3480, 4664 |
| Bst6I | CTCTTC | 5 cut(s) | 109, 813, 2303, 2485, 3475 |
| BstAFI | CTTAAG | 1 cut(s) | 1697 |
| BstAUI | TGTACA | 1 cut(s) | 3067 |
| BstDSI | CCRYGG | 2 cut(s) | 882, 1515 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 854 |
| BstFNI | CGCG | 3 cut(s) | 4212, 4358, 4865 |
| BstH2I | RGCGCY | 2 cut(s) | 1568, 2446 |
| BstHHI | GCGC | 2 cut(s) | 1567, 2445 |
| BstMAI | GTCTC | 7 cut(s) | 288, 300, 1750, 2343, 2487, 3175, 3355 |
| BstNI | CCWGG | 9 cut(s) | 1152, 1479, 1955, 2004, 2118, 3401, 4111, 4157, 4530 |
| BstNSI | RCATGY | 4 cut(s) | 1021, 1990, 4339, 4475 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1917 |
| BstSFI | CTRYAG | 8 cut(s) | 9, 328, 643, 1731, 2578, 2637, 2817, 3159 |
| BstSLI | GKGCMC | 4 cut(s) | 1583, 3376, 4104, 4381 |
| BstUI | CGCG | 3 cut(s) | 4212, 4358, 4865 |
| BstV2I | GAAGAC | 3 cut(s) | 1138, 3375, 4221 |
| BstX2I | RGATCY | 2 cut(s) | 3062, 4189 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1199, 2389, 4405, 4634 |
| BstYI | RGATCY | 2 cut(s) | 3062, 4189 |
| Bsu15I | ATCGAT | 3 cut(s) | 135, 162, 3322 |
| BsuI | GTATCC | 4 cut(s) | 67, 1479, 1612, 3458 |
| BsuRI | GGCC | 7 cut(s) | 1302, 1846, 3374, 3530, 3741, 4109, 4424 |
| BsuTUI | ATCGAT | 3 cut(s) | 135, 162, 3322 |
| BtgI | CCRYGG | 2 cut(s) | 882, 1515 |
| BtgZI | GCGATG | 1 cut(s) | 4880 |
| BtsI | GCAGTG | 3 cut(s) | 2342, 2400, 3803 |
| BtuMI | TCGCGA | 1 cut(s) | 4865 |
| BveI | ACCTGC | 1 cut(s) | 433 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1478 |
| CciI | TCATGA | 2 cut(s) | 718, 811 |
| CfoI | GCGC | 2 cut(s) | 1567, 2445 |
| ClaI | ATCGAT | 3 cut(s) | 135, 162, 3322 |
| CseI | GACGC | 2 cut(s) | 4201, 4710 |
| Csp6I | GTAC | 9 cut(s) | 526, 1475, 2071, 2416, 3068, 3218, 4164, 4239, 4856 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 430, 465, 2926, 2961 |
| CviQI | GTAC | 9 cut(s) | 526, 1475, 2071, 2416, 3068, 3218, 4164, 4239, 4856 |
| DraI | TTTAAA | 1 cut(s) | 2475 |
| Eam1104I | CTCTTC | 5 cut(s) | 109, 813, 2303, 2485, 3475 |
| EarI | CTCTTC | 5 cut(s) | 109, 813, 2303, 2485, 3475 |
| Eco130I | CCWWGG | 3 cut(s) | 882, 4398, 4608 |
| Eco24I | GRGCYC | 3 cut(s) | 1879, 3376, 4813 |
| Eco31I | GGTCTC | 1 cut(s) | 288 |
| Eco32I | GATATC | 2 cut(s) | 714, 3001 |
| Eco47I | GGWCC | 5 cut(s) | 422, 574, 1390, 1512, 3226 |
| Eco47III | AGCGCT | 1 cut(s) | 2444 |
| Eco88I | CYCGRG | 1 cut(s) | 3590 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 854 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3226, 3372 |
| EcoRI | GAATTC | 2 cut(s) | 3535, 3799 |
| EcoRII | CCWGG | 9 cut(s) | 1150, 1477, 1953, 2002, 2116, 3399, 4109, 4155, 4528 |
| EcoRV | GATATC | 2 cut(s) | 714, 3001 |
| EcoT14I | CCWWGG | 3 cut(s) | 882, 4398, 4608 |
| EcoT22I | ATGCAT | 1 cut(s) | 4436 |
| EcoT38I | GRGCYC | 3 cut(s) | 1879, 3376, 4813 |
| ErhI | CCWWGG | 3 cut(s) | 882, 4398, 4608 |
| Esp3I | CGTCTC | 1 cut(s) | 300 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1680, 1712, 4586, 4618 |
| FaqI | GGGAC | 6 cut(s) | 28, 201, 3239, 3927, 4157, 4650 |
| FauNDI | CATATG | 1 cut(s) | 1942 |
| FbaI | TGATCA | 1 cut(s) | 1606 |
| FblI | GTMKAC | 1 cut(s) | 623 |
| FriOI | GRGCYC | 3 cut(s) | 1879, 3376, 4813 |
| FspBI | CTAG | 6 cut(s) | 18, 1071, 2199, 2514, 2928, 4128 |
| GlaI | GCGC | 2 cut(s) | 1566, 2444 |
| GsaI | CCCAGC | 1 cut(s) | 1207 |
| GsuI | CTGGAG | 2 cut(s) | 270, 1976 |
| HaeII | RGCGCY | 2 cut(s) | 1568, 2446 |
| HaeIII | GGCC | 7 cut(s) | 1302, 1846, 3374, 3530, 3741, 4109, 4424 |
| HapII | CCGG | 5 cut(s) | 3022, 3678, 4149, 4224, 4678 |
| HgaI | GACGC | 2 cut(s) | 4201, 4710 |
| HhaI | GCGC | 2 cut(s) | 1567, 2445 |
| Hin6I | GCGC | 2 cut(s) | 1565, 2443 |
| HinP1I | GCGC | 2 cut(s) | 1565, 2443 |
| HincII | GTYRAC | 4 cut(s) | 374, 624, 1090, 1738 |
| HindII | GTYRAC | 4 cut(s) | 374, 624, 1090, 1738 |
| HindIII | AAGCTT | 5 cut(s) | 96, 1694, 2317, 2700, 3206 |
| HpaI | GTTAAC | 1 cut(s) | 1738 |
| HpaII | CCGG | 5 cut(s) | 3022, 3678, 4149, 4224, 4678 |
| Hpy99I | CGWCG | 1 cut(s) | 4726 |
| HpyCH4III | ACNGT | 9 cut(s) | 647, 1087, 1519, 1742, 2070, 2582, 3358, 3480, 4664 |
| HpyCH4IV | ACGT | 5 cut(s) | 376, 1275, 4586, 4833, 4849 |
| HpySE526I | ACGT | 5 cut(s) | 376, 1275, 4586, 4833, 4849 |
| HspAI | GCGC | 2 cut(s) | 1565, 2443 |
| Kpn2I | TCCGGA | 1 cut(s) | 4677 |
| Ksp22I | TGATCA | 1 cut(s) | 1606 |
| KspAI | GTTAAC | 1 cut(s) | 1738 |
| LguI | GCTCTTC | 1 cut(s) | 109 |
| MaeI | CTAG | 6 cut(s) | 18, 1071, 2199, 2514, 2928, 4128 |
| MaeII | ACGT | 5 cut(s) | 376, 1275, 4586, 4833, 4849 |
| MfeI | CAATTG | 1 cut(s) | 4517 |
| MflI | RGATCY | 2 cut(s) | 3062, 4189 |
| MhlI | GDGCHC | 7 cut(s) | 1583, 1879, 3293, 3376, 4104, 4381, 4813 |
| MlyI | GAGTC | 9 cut(s) | 301, 1697, 1790, 2101, 2489, 2933, 3389, 4139, 4321 |
| MmeI | TCCRAC | 3 cut(s) | 153, 400, 4272 |
| Mph1103I | ATGCAT | 1 cut(s) | 4436 |
| MroI | TCCGGA | 1 cut(s) | 4677 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3685 |
| MslI | CAYNNNNRTG | 8 cut(s) | 114, 1016, 2393, 2553, 3432, 4340, 4439, 4476 |
| MspA1I | CMGCKG | 4 cut(s) | 280, 950, 3953, 4751 |
| MspCI | CTTAAG | 1 cut(s) | 1697 |
| MspI | CCGG | 5 cut(s) | 3022, 3678, 4149, 4224, 4678 |
| MunI | CAATTG | 1 cut(s) | 4517 |
| MvaI | CCWGG | 9 cut(s) | 1152, 1479, 1955, 2004, 2118, 3401, 4111, 4157, 4530 |
| MvnI | CGCG | 3 cut(s) | 4212, 4358, 4865 |
| NciI | CCSGG | 1 cut(s) | 4225 |
| NcoI | CCATGG | 1 cut(s) | 882 |
| NdeI | CATATG | 1 cut(s) | 1942 |
| NmeAIII | GCCGAG | 1 cut(s) | 514 |
| NmuCI | GTSAC | 8 cut(s) | 801, 1340, 1505, 1910, 2384, 2459, 2664, 3888 |
| NruI | TCGCGA | 1 cut(s) | 4865 |
| NsiI | ATGCAT | 1 cut(s) | 4436 |
| NspI | RCATGY | 4 cut(s) | 1021, 1990, 4339, 4475 |
| PaeI | GCATGC | 2 cut(s) | 1990, 4339 |
| PagI | TCATGA | 2 cut(s) | 718, 811 |
| PciI | ACATGT | 1 cut(s) | 1017 |
| PciSI | GCTCTTC | 1 cut(s) | 109 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3943, 4730 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3685 |
| PflFI | GACNNNGTC | 1 cut(s) | 3347 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1478, 1835, 3908 |
| PfoI | TCCNGGA | 1 cut(s) | 3399 |
| PleI | GAGTC | 9 cut(s) | 301, 1697, 1790, 2100, 2489, 2932, 3388, 4139, 4321 |
| PpsI | GAGTC | 9 cut(s) | 301, 1697, 1790, 2100, 2489, 2932, 3388, 4139, 4321 |
| PpuMI | RGGWCCY | 1 cut(s) | 3226 |
| PscI | ACATGT | 1 cut(s) | 1017 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1917 |
| PshBI | ATTAAT | 2 cut(s) | 509, 564 |
| PsiI | TTATAA | 1 cut(s) | 396 |
| Psp1406I | AACGTT | 1 cut(s) | 4586 |
| Psp5II | RGGWCCY | 1 cut(s) | 3226 |
| Psp6I | CCWGG | 9 cut(s) | 1150, 1477, 1953, 2002, 2116, 3399, 4109, 4155, 4528 |
| PspFI | CCCAGC | 1 cut(s) | 1203 |
| PspGI | CCWGG | 9 cut(s) | 1150, 1477, 1953, 2002, 2116, 3399, 4109, 4155, 4528 |
| PspOMI | GGGCCC | 1 cut(s) | 3372 |
| PspPPI | RGGWCCY | 1 cut(s) | 3226 |
| PstI | CTGCAG | 3 cut(s) | 332, 1735, 2641 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1478 |
| PsuI | RGATCY | 2 cut(s) | 3062, 4189 |
| PsyI | GACNNNGTC | 1 cut(s) | 3347 |
| PvuII | CAGCTG | 3 cut(s) | 950, 3953, 4751 |
| RruI | TCGCGA | 1 cut(s) | 4865 |
| RsaI | GTAC | 9 cut(s) | 527, 1476, 2072, 2417, 3069, 3219, 4165, 4240, 4857 |
| RsaNI | GTAC | 9 cut(s) | 526, 1475, 2071, 2416, 3068, 3218, 4164, 4239, 4856 |
| RseI | CAYNNNNRTG | 8 cut(s) | 114, 1016, 2393, 2553, 3432, 4340, 4439, 4476 |
| SalI | GTCGAC | 1 cut(s) | 622 |
| SapI | GCTCTTC | 1 cut(s) | 109 |
| SchI | GAGTC | 9 cut(s) | 301, 1697, 1790, 2101, 2489, 2933, 3389, 4139, 4321 |
| SduI | GDGCHC | 7 cut(s) | 1583, 1879, 3293, 3376, 4104, 4381, 4813 |
| SfcI | CTRYAG | 8 cut(s) | 9, 328, 643, 1731, 2578, 2637, 2817, 3159 |
| SinI | GGWCC | 5 cut(s) | 422, 574, 1390, 1512, 3226 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 114, 1016, 2393, 2553, 3432, 4340, 4439, 4476 |
| SmlI | CTYRAG | 6 cut(s) | 362, 726, 1543, 1697, 2611, 4496 |
| SmoI | CTYRAG | 6 cut(s) | 362, 726, 1543, 1697, 2611, 4496 |
| SphI | GCATGC | 2 cut(s) | 1990, 4339 |
| SsiI | CCGC | 8 cut(s) | 224, 280, 311, 1930, 2878, 4259, 4356, 4415 |
| SspI | AATATT | 2 cut(s) | 1603, 3192 |
| SspMI | CTAG | 6 cut(s) | 18, 1071, 2199, 2514, 2928, 4128 |
| StyI | CCWWGG | 3 cut(s) | 882, 4398, 4608 |
| TaaI | ACNGT | 9 cut(s) | 647, 1087, 1519, 1742, 2070, 2582, 3358, 3480, 4664 |
| TaiI | ACGT | 5 cut(s) | 379, 1278, 4589, 4836, 4852 |
| TatI | WGTACW | 2 cut(s) | 2415, 3067 |
| TauI | GCSGC | 3 cut(s) | 1933, 4262, 4418 |
| TseFI | GTSAC | 8 cut(s) | 801, 1340, 1505, 1910, 2384, 2459, 2664, 3888 |
| Tsp45I | GTSAC | 8 cut(s) | 801, 1340, 1505, 1910, 2384, 2459, 2664, 3888 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3347 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1478, 1835, 3908 |
| Vha464I | CTTAAG | 1 cut(s) | 1697 |
| VneI | GTGCAC | 1 cut(s) | 4377 |
| VpaK11BI | GGWCC | 5 cut(s) | 422, 574, 1390, 1512, 3226 |
| VspI | ATTAAT | 2 cut(s) | 509, 564 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 854 |
| XbaI | TCTAGA | 1 cut(s) | 2513 |
| XceI | RCATGY | 4 cut(s) | 1021, 1990, 4339, 4475 |
| XmiI | GTMKAC | 1 cut(s) | 623 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3685 |
| XspI | CTAG | 6 cut(s) | 18, 1071, 2199, 2514, 2928, 4128 |
| Zsp2I | ATGCAT | 1 cut(s) | 4436 |