CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62900 AT3G62900 AT3G62900 |
| fragaria_vesca | FvH4_2g25070 |
| malus_domestica | MD03G1282000.v1.1 MD11G1301800.v1.1 |
| prunus_persica | Prupe.8G255400_v2.0.a1 |
| pyrus_communis | pycom03g22260 pycom03g22270 pycom03g22280 pycom11g26440 |
| rosa_chinensis | RchiOBHm_Chr6g0293091 |
| rosa_laevigata | RLG00000011972 |
| rosa_multiflora | Rmu_sc0001042.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00174420 |
| rosa_rugosa | Rorug06G0232700 |
| rosa_samantha | Rh6AG345500 Rh6BG353300 Rh6CG359700 Rh6DG345600 |
| rosa_wichuraiana | Rw6G030110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 143 |
| AatII | GACGTC | 1 cut(s) | 147 |
| Acc16I | TGCGCA | 1 cut(s) | 4559 |
| AccB1I | GGYRCC | 2 cut(s) | 466, 2298 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 881, 3788, 3836, 4787 |
| AccI | GTMKAC | 3 cut(s) | 626, 2868, 4470 |
| AciI | CCGC | 8 cut(s) | 283, 549, 2071, 2081, 2349, 2513, 4142, 4238 |
| AcoI | YGGCCR | 3 cut(s) | 373, 1426, 3622 |
| AcsI | RAATTY | 7 cut(s) | 171, 1629, 2320, 2928, 4151, 4221, 4568 |
| AcvI | CACGTG | 1 cut(s) | 4616 |
| AcyI | GRCGYC | 1 cut(s) | 144 |
| AflII | CTTAAG | 1 cut(s) | 1856 |
| AflIII | ACRYGT | 1 cut(s) | 4615 |
| AgeI | ACCGGT | 1 cut(s) | 2154 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 777, 3819 |
| AhlI | ACTAGT | 2 cut(s) | 752, 3956 |
| AjnI | CCWGG | 9 cut(s) | 923, 1641, 1670, 1975, 2143, 2257, 2341, 4137, 4408 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3155, 3187, 3318, 3350 |
| Alw21I | GWGCWC | 4 cut(s) | 1711, 3799, 3976, 4261 |
| Alw26I | GTCTC | 6 cut(s) | 291, 303, 553, 1368, 2847, 4100 |
| Alw44I | GTGCAC | 1 cut(s) | 3972 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2006, 2515, 3836, 4634 |
| AoxI | GGCC | 5 cut(s) | 373, 658, 1426, 2602, 3622 |
| ApaLI | GTGCAC | 1 cut(s) | 3972 |
| ApoI | RAATTY | 7 cut(s) | 171, 1629, 2320, 2928, 4151, 4221, 4568 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1522, 1554, 3335, 3367 |
| AseI | ATTAAT | 1 cut(s) | 2027 |
| AsiGI | ACCGGT | 1 cut(s) | 2154 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 430, 4027 |
| AspLEI | GCGC | 1 cut(s) | 4560 |
| AsuC2I | CCSGG | 3 cut(s) | 3463, 3561, 4040 |
| AxyI | CCTNAGG | 1 cut(s) | 816 |
| BaeGI | GKGCMC | 4 cut(s) | 192, 1695, 3976, 3987 |
| BalI | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| BamHI | GGATCC | 2 cut(s) | 2861, 3717 |
| BanI | GGYRCC | 2 cut(s) | 466, 2298 |
| BanII | GRGCYC | 4 cut(s) | 614, 2020, 3799, 4693 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 661, 693, 2543, 2575, 4325, 4357 |
| BbrPI | CACGTG | 1 cut(s) | 4616 |
| BbsI | GAAGAC | 2 cut(s) | 2040, 3699 |
| Bbv12I | GWGCWC | 4 cut(s) | 1711, 3799, 3976, 4261 |
| BbvCI | CCTCAGC | 1 cut(s) | 4462 |
| BceAI | ACGGC | 4 cut(s) | 614, 3430, 4752, 4754 |
| BciT130I | CCWGG | 9 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139, 4410 |
| BciVI | GTATCC | 3 cut(s) | 540, 1771, 3739 |
| BclI | TGATCA | 1 cut(s) | 2305 |
| BcnI | CCSGG | 3 cut(s) | 3463, 3561, 4040 |
| BcoDI | GTCTC | 6 cut(s) | 291, 303, 553, 1368, 2847, 4100 |
| BcuI | ACTAGT | 2 cut(s) | 752, 3956 |
| BfmI | CTRYAG | 6 cut(s) | 225, 646, 1212, 1890, 2992, 3273 |
| BfrI | CTTAAG | 1 cut(s) | 1856 |
| BfuI | GTATCC | 3 cut(s) | 540, 1771, 3739 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1268, 1355 |
| BglII | AGATCT | 1 cut(s) | 893 |
| BlpI | GCTNAGC | 1 cut(s) | 2516 |
| BmcAI | AGTACT | 2 cut(s) | 1504, 3333 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 777, 3819 |
| BmrI | ACTGGG | 3 cut(s) | 1252, 1339, 2022 |
| BmuI | ACTGGG | 3 cut(s) | 1252, 1339, 2022 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2058, 3363 |
| BpiI | GAAGAC | 2 cut(s) | 2040, 3699 |
| BpmI | CTGGAG | 5 cut(s) | 273, 297, 746, 1654, 3810 |
| Bpu10I | CCTNAGC | 2 cut(s) | 602, 4462 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2516 |
| BpuEI | CTTGAG | 5 cut(s) | 386, 575, 711, 2740, 4082 |
| BpuMI | CCSGG | 3 cut(s) | 3463, 3561, 4040 |
| Bsa29I | ATCGAT | 2 cut(s) | 162, 3427 |
| BsaAI | YACGTR | 2 cut(s) | 3380, 4616 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1428, 1941, 4584, 4803 |
| BsaHI | GRCGYC | 1 cut(s) | 144 |
| BsaI | GGTCTC | 3 cut(s) | 291, 303, 553 |
| BsaWI | WCCGGW | 2 cut(s) | 781, 2154 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2002, 2032, 3584, 3614 |
| Bse118I | RCCGGY | 1 cut(s) | 2154 |
| Bse21I | CCTNAGG | 1 cut(s) | 816 |
| Bse3DI | GCAATG | 4 cut(s) | 1829, 2689, 4599, 4752 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1428, 1941, 4584, 4803 |
| BseBI | CCWGG | 9 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139, 4410 |
| BseCI | ATCGAT | 2 cut(s) | 162, 3427 |
| BseJI | GATNNNNATC | 4 cut(s) | 1428, 1941, 4584, 4803 |
| BseMI | GCAATG | 4 cut(s) | 1829, 2689, 4599, 4752 |
| BseRI | GAGGAG | 4 cut(s) | 1088, 2186, 2987, 3807 |
| BseSI | GKGCMC | 4 cut(s) | 192, 1695, 3976, 3987 |
| BseYI | CCCAGC | 1 cut(s) | 56 |
| BsgI | GTGCAG | 1 cut(s) | 2066 |
| BshFI | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| BshNI | GGYRCC | 2 cut(s) | 466, 2298 |
| BshTI | ACCGGT | 1 cut(s) | 2154 |
| BshVI | ATCGAT | 2 cut(s) | 162, 3427 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1711, 3799, 3976, 4261 |
| BsiSI | CCGG | 5 cut(s) | 782, 2155, 3462, 3560, 4040 |
| BslFI | GGGAC | 4 cut(s) | 2651, 3448, 3807, 4530 |
| BsmAI | GTCTC | 6 cut(s) | 291, 303, 553, 1368, 2847, 4100 |
| BsmBI | CGTCTC | 1 cut(s) | 4100 |
| BsmFI | GGGAC | 4 cut(s) | 2651, 3448, 3807, 4530 |
| BsmI | GAATGC | 3 cut(s) | 1171, 4351, 4673 |
| BsnI | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| Bso31I | GGTCTC | 3 cut(s) | 291, 303, 553 |
| Bsp1407I | TGTACA | 1 cut(s) | 4582 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2516 |
| BspACI | CCGC | 8 cut(s) | 283, 549, 2071, 2081, 2349, 2513, 4142, 4238 |
| BspANI | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| BspDI | ATCGAT | 2 cut(s) | 162, 3427 |
| BspHI | TCATGA | 1 cut(s) | 4261 |
| BspMAI | CTGCAG | 2 cut(s) | 229, 1894 |
| BspQI | GCTCTTC | 2 cut(s) | 3071, 3217 |
| BspT107I | GGYRCC | 2 cut(s) | 466, 2298 |
| BspTI | CTTAAG | 1 cut(s) | 1856 |
| BspTNI | GGTCTC | 3 cut(s) | 291, 303, 553 |
| BsrDI | GCAATG | 4 cut(s) | 1829, 2689, 4599, 4752 |
| BsrFI | RCCGGY | 1 cut(s) | 2154 |
| BsrGI | TGTACA | 1 cut(s) | 4582 |
| BssAI | RCCGGY | 1 cut(s) | 2154 |
| BssNI | GRCGYC | 1 cut(s) | 144 |
| BssT1I | CCWWGG | 4 cut(s) | 875, 1634, 2227, 4488 |
| Bst2UI | CCWGG | 9 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139, 4410 |
| Bst4CI | ACNGT | 9 cut(s) | 356, 650, 668, 2211, 2738, 2993, 4054, 4196, 4787 |
| BstACI | GRCGYC | 1 cut(s) | 144 |
| BstAFI | CTTAAG | 1 cut(s) | 1856 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2006, 2338 |
| BstAUI | TGTACA | 1 cut(s) | 4582 |
| BstBAI | YACGTR | 2 cut(s) | 3380, 4616 |
| BstC8I | GCNNGC | 7 cut(s) | 2129, 2334, 3049, 4202, 4363, 4562, 4743 |
| BstDSI | CCRYGG | 2 cut(s) | 2725, 3386 |
| BstHHI | GCGC | 1 cut(s) | 4560 |
| BstMAI | GTCTC | 6 cut(s) | 291, 303, 553, 1368, 2847, 4100 |
| BstNI | CCWGG | 9 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139, 4410 |
| BstNSI | RCATGY | 3 cut(s) | 2131, 2336, 4564 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2058, 3363 |
| BstSFI | CTRYAG | 6 cut(s) | 225, 646, 1212, 1890, 2992, 3273 |
| BstSLI | GKGCMC | 4 cut(s) | 192, 1695, 3976, 3987 |
| BstSNI | TACGTA | 1 cut(s) | 3380 |
| BstV2I | GAAGAC | 2 cut(s) | 2040, 3699 |
| BstX2I | RGATCY | 8 cut(s) | 820, 866, 893, 1759, 2861, 3176, 3717, 3997 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 2115, 2324, 2533, 4285, 4514 |
| BstYI | RGATCY | 8 cut(s) | 820, 866, 893, 1759, 2861, 3176, 3717, 3997 |
| Bsu15I | ATCGAT | 2 cut(s) | 162, 3427 |
| Bsu36I | CCTNAGG | 1 cut(s) | 816 |
| BsuI | GTATCC | 3 cut(s) | 540, 1771, 3739 |
| BsuRI | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| BsuTUI | ATCGAT | 2 cut(s) | 162, 3427 |
| BtgI | CCRYGG | 2 cut(s) | 2725, 3386 |
| BtgZI | GCGATG | 1 cut(s) | 4332 |
| BtsI | GCAGTG | 4 cut(s) | 2054, 2544, 3064, 4233 |
| Cac8I | GCNNGC | 7 cut(s) | 2129, 2334, 3049, 4202, 4363, 4562, 4743 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2006, 2515, 3836, 4634 |
| CciI | TCATGA | 1 cut(s) | 4261 |
| CfoI | GCGC | 1 cut(s) | 4560 |
| Cfr10I | RCCGGY | 1 cut(s) | 2154 |
| ClaI | ATCGAT | 2 cut(s) | 162, 3427 |
| CseI | GACGC | 1 cut(s) | 4607 |
| CspAI | ACCGGT | 1 cut(s) | 2154 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3040, 3075 |
| DraI | TTTAAA | 4 cut(s) | 360, 1416, 2619, 4059 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 143 |
| DriI | GACNNNNNGTC | 2 cut(s) | 777, 3819 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 143 |
| EaeI | YGGCCR | 3 cut(s) | 373, 1426, 3622 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 777, 3819 |
| Ecl136II | GAGCTC | 1 cut(s) | 3797 |
| Eco105I | TACGTA | 1 cut(s) | 3380 |
| Eco130I | CCWWGG | 4 cut(s) | 875, 1634, 2227, 4488 |
| Eco24I | GRGCYC | 4 cut(s) | 614, 2020, 3799, 4693 |
| Eco31I | GGTCTC | 3 cut(s) | 291, 303, 553 |
| Eco32I | GATATC | 1 cut(s) | 643 |
| Eco53kI | GAGCTC | 1 cut(s) | 3797 |
| Eco72I | CACGTG | 1 cut(s) | 4616 |
| Eco81I | CCTNAGG | 1 cut(s) | 816 |
| EcoICRI | GAGCTC | 1 cut(s) | 3797 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1638, 2603, 4403 |
| EcoRII | CCWGG | 9 cut(s) | 923, 1641, 1670, 1975, 2143, 2257, 2341, 4137, 4408 |
| EcoRV | GATATC | 1 cut(s) | 643 |
| EcoT14I | CCWWGG | 4 cut(s) | 875, 1634, 2227, 4488 |
| EcoT22I | ATGCAT | 1 cut(s) | 4673 |
| EcoT38I | GRGCYC | 4 cut(s) | 614, 2020, 3799, 4693 |
| ErhI | CCWWGG | 4 cut(s) | 875, 1634, 2227, 4488 |
| Esp3I | CGTCTC | 1 cut(s) | 4100 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1839, 1871, 4015, 4047, 4466, 4498 |
| FaqI | GGGAC | 4 cut(s) | 2651, 3448, 3807, 4530 |
| FauI | CCCGC | 1 cut(s) | 2342 |
| FauNDI | CATATG | 2 cut(s) | 2934, 4398 |
| FbaI | TGATCA | 1 cut(s) | 2305 |
| FblI | GTMKAC | 3 cut(s) | 626, 2868, 4470 |
| FriOI | GRGCYC | 4 cut(s) | 614, 2020, 3799, 4693 |
| FspAI | RTGCGCAY | 1 cut(s) | 4559 |
| FspI | TGCGCA | 1 cut(s) | 4559 |
| GlaI | GCGC | 1 cut(s) | 4559 |
| GsaI | CCCAGC | 1 cut(s) | 60 |
| GsuI | CTGGAG | 5 cut(s) | 273, 297, 746, 1654, 3810 |
| HaeIII | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| HapII | CCGG | 5 cut(s) | 782, 2155, 3462, 3560, 4040 |
| HgaI | GACGC | 1 cut(s) | 4607 |
| HhaI | GCGC | 1 cut(s) | 4560 |
| Hin1I | GRCGYC | 1 cut(s) | 144 |
| Hin6I | GCGC | 1 cut(s) | 4558 |
| HinP1I | GCGC | 1 cut(s) | 4558 |
| HincII | GTYRAC | 4 cut(s) | 627, 1196, 1897, 2476 |
| HindII | GTYRAC | 4 cut(s) | 627, 1196, 1897, 2476 |
| HindIII | AAGCTT | 3 cut(s) | 1721, 1853, 2461 |
| HpaI | GTTAAC | 2 cut(s) | 1897, 2476 |
| HpaII | CCGG | 5 cut(s) | 782, 2155, 3462, 3560, 4040 |
| Hpy99I | CGWCG | 2 cut(s) | 146, 149 |
| HpyCH4III | ACNGT | 9 cut(s) | 356, 650, 668, 2211, 2738, 2993, 4054, 4196, 4787 |
| HpyCH4IV | ACGT | 5 cut(s) | 144, 3103, 3379, 4615, 4729 |
| HpySE526I | ACGT | 5 cut(s) | 144, 3103, 3379, 4615, 4729 |
| Hsp92I | GRCGYC | 1 cut(s) | 144 |
| HspAI | GCGC | 1 cut(s) | 4558 |
| Ksp22I | TGATCA | 1 cut(s) | 2305 |
| KspAI | GTTAAC | 2 cut(s) | 1897, 2476 |
| LguI | GCTCTTC | 2 cut(s) | 3071, 3217 |
| MaeII | ACGT | 5 cut(s) | 144, 3103, 3379, 4615, 4729 |
| MflI | RGATCY | 8 cut(s) | 820, 866, 893, 1759, 2861, 3176, 3717, 3997 |
| MlsI | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| MluNI | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| MlyI | GAGTC | 9 cut(s) | 304, 1463, 1546, 3047, 3148, 3359, 3808, 4220, 4786 |
| MmeI | TCCRAC | 2 cut(s) | 397, 844 |
| Mox20I | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| Mph1103I | ATGCAT | 1 cut(s) | 4673 |
| MroXI | GAANNNNTTC | 2 cut(s) | 430, 4027 |
| MscI | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2963, 3391, 4266, 4356 |
| Msp20I | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| MspA1I | CMGCKG | 4 cut(s) | 283, 2349, 2515, 4631 |
| MspCI | CTTAAG | 1 cut(s) | 1856 |
| MspI | CCGG | 5 cut(s) | 782, 2155, 3462, 3560, 4040 |
| Mva1269I | GAATGC | 3 cut(s) | 1171, 4351, 4673 |
| MvaI | CCWGG | 9 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139, 4410 |
| NciI | CCSGG | 3 cut(s) | 3463, 3561, 4040 |
| NdeI | CATATG | 2 cut(s) | 2934, 4398 |
| NmuCI | GTSAC | 5 cut(s) | 804, 2051, 2528, 3351, 3768 |
| NsbI | TGCGCA | 1 cut(s) | 4559 |
| NsiI | ATGCAT | 1 cut(s) | 4673 |
| NspI | RCATGY | 3 cut(s) | 2131, 2336, 4564 |
| PaeI | GCATGC | 3 cut(s) | 2131, 2336, 4564 |
| PagI | TCATGA | 1 cut(s) | 4261 |
| PciSI | GCTCTTC | 2 cut(s) | 3071, 3217 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 141, 159, 3823 |
| PctI | GAATGC | 3 cut(s) | 1171, 4351, 4673 |
| PdmI | GAANNNNTTC | 2 cut(s) | 430, 4027 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 881, 3788, 3836, 4787 |
| PinAI | ACCGGT | 1 cut(s) | 2154 |
| PleI | GAGTC | 9 cut(s) | 304, 1463, 1545, 3046, 3147, 3358, 3808, 4219, 4785 |
| PmaCI | CACGTG | 1 cut(s) | 4616 |
| PmlI | CACGTG | 1 cut(s) | 4616 |
| PpsI | GAGTC | 9 cut(s) | 304, 1463, 1545, 3046, 3147, 3358, 3808, 4219, 4785 |
| Ppu21I | YACGTR | 2 cut(s) | 3380, 4616 |
| PpuMI | RGGWCCY | 2 cut(s) | 1638, 4403 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2058, 3363 |
| PshBI | ATTAAT | 1 cut(s) | 2027 |
| Psp124BI | GAGCTC | 1 cut(s) | 3799 |
| Psp5II | RGGWCCY | 2 cut(s) | 1638, 4403 |
| Psp6I | CCWGG | 9 cut(s) | 923, 1641, 1670, 1975, 2143, 2257, 2341, 4137, 4408 |
| PspCI | CACGTG | 1 cut(s) | 4616 |
| PspFI | CCCAGC | 1 cut(s) | 56 |
| PspGI | CCWGG | 9 cut(s) | 923, 1641, 1670, 1975, 2143, 2257, 2341, 4137, 4408 |
| PspPPI | RGGWCCY | 2 cut(s) | 1638, 4403 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3937, 3969 |
| PstI | CTGCAG | 2 cut(s) | 229, 1894 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2006, 2515, 3836, 4634 |
| PsuI | RGATCY | 8 cut(s) | 820, 866, 893, 1759, 2861, 3176, 3717, 3997 |
| PvuII | CAGCTG | 1 cut(s) | 4631 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2963, 3391, 4266, 4356 |
| SacI | GAGCTC | 1 cut(s) | 3799 |
| SalI | GTCGAC | 1 cut(s) | 625 |
| SapI | GCTCTTC | 2 cut(s) | 3071, 3217 |
| ScaI | AGTACT | 2 cut(s) | 1504, 3333 |
| SchI | GAGTC | 9 cut(s) | 304, 1463, 1546, 3047, 3148, 3359, 3808, 4220, 4786 |
| SfcI | CTRYAG | 6 cut(s) | 225, 646, 1212, 1890, 2992, 3273 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2963, 3391, 4266, 4356 |
| SmlI | CTYRAG | 6 cut(s) | 365, 590, 726, 1856, 2755, 4097 |
| SmoI | CTYRAG | 6 cut(s) | 365, 590, 726, 1856, 2755, 4097 |
| SnaBI | TACGTA | 1 cut(s) | 3380 |
| SpeI | ACTAGT | 2 cut(s) | 752, 3956 |
| SphI | GCATGC | 3 cut(s) | 2131, 2336, 4564 |
| SsiI | CCGC | 8 cut(s) | 283, 549, 2071, 2081, 2349, 2513, 4142, 4238 |
| SstI | GAGCTC | 1 cut(s) | 3799 |
| StyI | CCWWGG | 4 cut(s) | 875, 1634, 2227, 4488 |
| TaaI | ACNGT | 9 cut(s) | 356, 650, 668, 2211, 2738, 2993, 4054, 4196, 4787 |
| TaiI | ACGT | 5 cut(s) | 147, 3106, 3382, 4618, 4732 |
| TaqI | TCGA | 8 cut(s) | 135, 162, 626, 2794, 3427, 3739, 4372, 4537 |
| TatI | WGTACW | 6 cut(s) | 1502, 2559, 3331, 3913, 4121, 4582 |
| TauI | GCSGC | 3 cut(s) | 2074, 2515, 4241 |
| TseFI | GTSAC | 5 cut(s) | 804, 2051, 2528, 3351, 3768 |
| Tsp45I | GTSAC | 5 cut(s) | 804, 2051, 2528, 3351, 3768 |
| TspGWI | ACGGA | 6 cut(s) | 1998, 2563, 2742, 2854, 3151, 3403 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 881, 3788, 3836, 4787 |
| Vha464I | CTTAAG | 1 cut(s) | 1856 |
| VneI | GTGCAC | 1 cut(s) | 3972 |
| VspI | ATTAAT | 1 cut(s) | 2027 |
| XapI | RAATTY | 7 cut(s) | 171, 1629, 2320, 2928, 4151, 4221, 4568 |
| XbaI | TCTAGA | 2 cut(s) | 2657, 2885 |
| XceI | RCATGY | 3 cut(s) | 2131, 2336, 4564 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3605 |
| XmiI | GTMKAC | 3 cut(s) | 626, 2868, 4470 |
| XmnI | GAANNNNTTC | 2 cut(s) | 430, 4027 |
| ZraI | GACGTC | 1 cut(s) | 145 |
| ZrmI | AGTACT | 2 cut(s) | 1504, 3333 |
| Zsp2I | ATGCAT | 1 cut(s) | 4673 |