CW-type Zinc Finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62900 AT3G62900 AT3G62900 |
| fragaria_vesca | FvH4_2g25070 |
| malus_domestica | MD03G1282000.v1.1 MD11G1301800.v1.1 |
| prunus_persica | Prupe.8G255400_v2.0.a1 |
| pyrus_communis | pycom03g22260 pycom03g22270 pycom03g22280 pycom11g26440 |
| rosa_chinensis | RchiOBHm_Chr6g0293091 |
| rosa_laevigata | RLG00000011972 |
| rosa_multiflora | Rmu_sc0001042.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00174420 |
| rosa_rugosa | Rorug06G0232700 |
| rosa_samantha | Rh6AG345500 Rh6BG353300 Rh6CG359700 Rh6DG345600 |
| rosa_wichuraiana | Rw6G030110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 143 |
| AatII | GACGTC | 1 cut(s) | 147 |
| AccB1I | GGYRCC | 2 cut(s) | 466, 2298 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 881, 3788, 3836 |
| AccI | GTMKAC | 2 cut(s) | 626, 2868 |
| AciI | CCGC | 8 cut(s) | 283, 549, 2071, 2081, 2349, 2513, 4142, 4238 |
| AcoI | YGGCCR | 3 cut(s) | 373, 1426, 3622 |
| AcsI | RAATTY | 6 cut(s) | 171, 1629, 2320, 2928, 4151, 4221 |
| AcuI | CTGAAG | 9 cut(s) | 681, 1527, 1671, 1735, 1866, 2471, 2492, 2799, 3906 |
| AcyI | GRCGYC | 1 cut(s) | 144 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 881, 1604, 1982, 2012, 2228, 2348, 3788, 3791, 3836 |
| AflII | CTTAAG | 1 cut(s) | 1856 |
| AgeI | ACCGGT | 1 cut(s) | 2154 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 777, 3819 |
| AhlI | ACTAGT | 2 cut(s) | 752, 3956 |
| AjnI | CCWGG | 8 cut(s) | 923, 1641, 1670, 1975, 2143, 2257, 2341, 4137 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3155, 3187, 3318, 3350 |
| Alw21I | GWGCWC | 3 cut(s) | 1711, 3799, 3976 |
| Alw26I | GTCTC | 6 cut(s) | 291, 303, 553, 1368, 2847, 4100 |
| Alw44I | GTGCAC | 1 cut(s) | 3972 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2006, 2515, 3836 |
| AoxI | GGCC | 5 cut(s) | 373, 658, 1426, 2602, 3622 |
| ApaLI | GTGCAC | 1 cut(s) | 3972 |
| ApoI | RAATTY | 6 cut(s) | 171, 1629, 2320, 2928, 4151, 4221 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1522, 1554, 3335, 3367 |
| AseI | ATTAAT | 1 cut(s) | 2027 |
| AsiGI | ACCGGT | 1 cut(s) | 2154 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 430, 4027 |
| AsuC2I | CCSGG | 3 cut(s) | 3463, 3561, 4040 |
| AsuHPI | GGTGA | 9 cut(s) | 798, 1546, 2478, 2750, 3261, 3285, 3416, 3520, 3533 |
| AvaII | GGWCC | 9 cut(s) | 577, 722, 1045, 1516, 1638, 1985, 2729, 2747, 4144 |
| AxyI | CCTNAGG | 1 cut(s) | 816 |
| BaeGI | GKGCMC | 4 cut(s) | 192, 1695, 3976, 3987 |
| BalI | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| BamHI | GGATCC | 2 cut(s) | 2861, 3717 |
| BanI | GGYRCC | 2 cut(s) | 466, 2298 |
| BanII | GRGCYC | 3 cut(s) | 614, 2020, 3799 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 661, 693, 2543, 2575 |
| BbsI | GAAGAC | 2 cut(s) | 2040, 3699 |
| Bbv12I | GWGCWC | 3 cut(s) | 1711, 3799, 3976 |
| BceAI | ACGGC | 2 cut(s) | 614, 3430 |
| BciT130I | CCWGG | 8 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139 |
| BciVI | GTATCC | 3 cut(s) | 540, 1771, 3739 |
| BclI | TGATCA | 1 cut(s) | 2305 |
| BcnI | CCSGG | 3 cut(s) | 3463, 3561, 4040 |
| BcoDI | GTCTC | 6 cut(s) | 291, 303, 553, 1368, 2847, 4100 |
| BcuI | ACTAGT | 2 cut(s) | 752, 3956 |
| BfmI | CTRYAG | 6 cut(s) | 225, 646, 1212, 1890, 2992, 3273 |
| BfrI | CTTAAG | 1 cut(s) | 1856 |
| BfuI | GTATCC | 3 cut(s) | 540, 1771, 3739 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1268, 1355 |
| BglII | AGATCT | 1 cut(s) | 893 |
| BlpI | GCTNAGC | 1 cut(s) | 2516 |
| BmcAI | AGTACT | 2 cut(s) | 1504, 3333 |
| Bme18I | GGWCC | 9 cut(s) | 577, 722, 1045, 1516, 1638, 1985, 2729, 2747, 4144 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 777, 3819 |
| BmrI | ACTGGG | 3 cut(s) | 1252, 1339, 2022 |
| BmuI | ACTGGG | 3 cut(s) | 1252, 1339, 2022 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2058, 3363 |
| BpiI | GAAGAC | 2 cut(s) | 2040, 3699 |
| BpmI | CTGGAG | 5 cut(s) | 273, 297, 746, 1654, 3810 |
| Bpu10I | CCTNAGC | 1 cut(s) | 602 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2516 |
| BpuEI | CTTGAG | 5 cut(s) | 386, 575, 711, 2740, 4082 |
| BpuMI | CCSGG | 3 cut(s) | 3463, 3561, 4040 |
| Bsa29I | ATCGAT | 2 cut(s) | 162, 3427 |
| BsaAI | YACGTR | 1 cut(s) | 3380 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1428, 1941 |
| BsaHI | GRCGYC | 1 cut(s) | 144 |
| BsaI | GGTCTC | 3 cut(s) | 291, 303, 553 |
| BsaWI | WCCGGW | 2 cut(s) | 781, 2154 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2002, 2032, 3584, 3614 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 881, 1604, 1982, 2012, 2228, 2348, 3788, 3791, 3836 |
| Bse118I | RCCGGY | 1 cut(s) | 2154 |
| Bse21I | CCTNAGG | 1 cut(s) | 816 |
| Bse3DI | GCAATG | 2 cut(s) | 1829, 2689 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1428, 1941 |
| BseBI | CCWGG | 8 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139 |
| BseCI | ATCGAT | 2 cut(s) | 162, 3427 |
| BseJI | GATNNNNATC | 2 cut(s) | 1428, 1941 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 881, 1604, 1982, 2012, 2228, 2348, 3788, 3791, 3836 |
| BseMI | GCAATG | 2 cut(s) | 1829, 2689 |
| BseRI | GAGGAG | 4 cut(s) | 1088, 2186, 2987, 3807 |
| BseSI | GKGCMC | 4 cut(s) | 192, 1695, 3976, 3987 |
| BseYI | CCCAGC | 1 cut(s) | 56 |
| BsgI | GTGCAG | 1 cut(s) | 2066 |
| BshFI | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| BshNI | GGYRCC | 2 cut(s) | 466, 2298 |
| BshTI | ACCGGT | 1 cut(s) | 2154 |
| BshVI | ATCGAT | 2 cut(s) | 162, 3427 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1711, 3799, 3976 |
| BsiSI | CCGG | 5 cut(s) | 782, 2155, 3462, 3560, 4040 |
| BslFI | GGGAC | 3 cut(s) | 2651, 3448, 3807 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 881, 1604, 1982, 2012, 2228, 2348, 3788, 3791, 3836 |
| BsmAI | GTCTC | 6 cut(s) | 291, 303, 553, 1368, 2847, 4100 |
| BsmBI | CGTCTC | 1 cut(s) | 4100 |
| BsmFI | GGGAC | 3 cut(s) | 2651, 3448, 3807 |
| BsmI | GAATGC | 1 cut(s) | 1171 |
| BsnI | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| Bso31I | GGTCTC | 3 cut(s) | 291, 303, 553 |
| Bsp1286I | GDGCHC | 8 cut(s) | 192, 614, 1695, 1711, 2020, 3799, 3976, 3987 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2516 |
| BspACI | CCGC | 8 cut(s) | 283, 549, 2071, 2081, 2349, 2513, 4142, 4238 |
| BspANI | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| BspDI | ATCGAT | 2 cut(s) | 162, 3427 |
| BspMAI | CTGCAG | 2 cut(s) | 229, 1894 |
| BspQI | GCTCTTC | 2 cut(s) | 3071, 3217 |
| BspT107I | GGYRCC | 2 cut(s) | 466, 2298 |
| BspTI | CTTAAG | 1 cut(s) | 1856 |
| BspTNI | GGTCTC | 3 cut(s) | 291, 303, 553 |
| BsrDI | GCAATG | 2 cut(s) | 1829, 2689 |
| BsrFI | RCCGGY | 1 cut(s) | 2154 |
| BssAI | RCCGGY | 1 cut(s) | 2154 |
| BssNI | GRCGYC | 1 cut(s) | 144 |
| BssT1I | CCWWGG | 3 cut(s) | 875, 1634, 2227 |
| Bst2UI | CCWGG | 8 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139 |
| Bst4CI | ACNGT | 8 cut(s) | 356, 650, 668, 2211, 2738, 2993, 4054, 4196 |
| Bst6I | CTCTTC | 9 cut(s) | 816, 876, 1129, 1697, 1806, 2412, 2447, 3071, 3217 |
| BstACI | GRCGYC | 1 cut(s) | 144 |
| BstAFI | CTTAAG | 1 cut(s) | 1856 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2006, 2338 |
| BstBAI | YACGTR | 1 cut(s) | 3380 |
| BstC8I | GCNNGC | 4 cut(s) | 2129, 2334, 3049, 4202 |
| BstDSI | CCRYGG | 2 cut(s) | 2725, 3386 |
| BstMAI | GTCTC | 6 cut(s) | 291, 303, 553, 1368, 2847, 4100 |
| BstNI | CCWGG | 8 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139 |
| BstNSI | RCATGY | 2 cut(s) | 2131, 2336 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2058, 3363 |
| BstSFI | CTRYAG | 6 cut(s) | 225, 646, 1212, 1890, 2992, 3273 |
| BstSLI | GKGCMC | 4 cut(s) | 192, 1695, 3976, 3987 |
| BstSNI | TACGTA | 1 cut(s) | 3380 |
| BstV2I | GAAGAC | 2 cut(s) | 2040, 3699 |
| BstX2I | RGATCY | 8 cut(s) | 820, 866, 893, 1759, 2861, 3176, 3717, 3997 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2115, 2324, 2533 |
| BstYI | RGATCY | 8 cut(s) | 820, 866, 893, 1759, 2861, 3176, 3717, 3997 |
| Bsu15I | ATCGAT | 2 cut(s) | 162, 3427 |
| Bsu36I | CCTNAGG | 1 cut(s) | 816 |
| BsuI | GTATCC | 3 cut(s) | 540, 1771, 3739 |
| BsuRI | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| BsuTUI | ATCGAT | 2 cut(s) | 162, 3427 |
| BtgI | CCRYGG | 2 cut(s) | 2725, 3386 |
| BtsI | GCAGTG | 4 cut(s) | 2054, 2544, 3064, 4233 |
| Cac8I | GCNNGC | 4 cut(s) | 2129, 2334, 3049, 4202 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2006, 2515, 3836 |
| Cfr10I | RCCGGY | 1 cut(s) | 2154 |
| ClaI | ATCGAT | 2 cut(s) | 162, 3427 |
| CspAI | ACCGGT | 1 cut(s) | 2154 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3040, 3075 |
| DraI | TTTAAA | 4 cut(s) | 360, 1416, 2619, 4059 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 143 |
| DriI | GACNNNNNGTC | 2 cut(s) | 777, 3819 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 143 |
| EaeI | YGGCCR | 3 cut(s) | 373, 1426, 3622 |
| Eam1104I | CTCTTC | 9 cut(s) | 816, 876, 1129, 1697, 1806, 2412, 2447, 3071, 3217 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 777, 3819 |
| EarI | CTCTTC | 9 cut(s) | 816, 876, 1129, 1697, 1806, 2412, 2447, 3071, 3217 |
| Ecl136II | GAGCTC | 1 cut(s) | 3797 |
| Eco105I | TACGTA | 1 cut(s) | 3380 |
| Eco130I | CCWWGG | 3 cut(s) | 875, 1634, 2227 |
| Eco24I | GRGCYC | 3 cut(s) | 614, 2020, 3799 |
| Eco31I | GGTCTC | 3 cut(s) | 291, 303, 553 |
| Eco32I | GATATC | 1 cut(s) | 643 |
| Eco47I | GGWCC | 9 cut(s) | 577, 722, 1045, 1516, 1638, 1985, 2729, 2747, 4144 |
| Eco53kI | GAGCTC | 1 cut(s) | 3797 |
| Eco57I | CTGAAG | 9 cut(s) | 681, 1527, 1671, 1735, 1866, 2471, 2492, 2799, 3906 |
| Eco81I | CCTNAGG | 1 cut(s) | 816 |
| EcoICRI | GAGCTC | 1 cut(s) | 3797 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1638, 2603 |
| EcoRII | CCWGG | 8 cut(s) | 923, 1641, 1670, 1975, 2143, 2257, 2341, 4137 |
| EcoRV | GATATC | 1 cut(s) | 643 |
| EcoT14I | CCWWGG | 3 cut(s) | 875, 1634, 2227 |
| EcoT38I | GRGCYC | 3 cut(s) | 614, 2020, 3799 |
| ErhI | CCWWGG | 3 cut(s) | 875, 1634, 2227 |
| Esp3I | CGTCTC | 1 cut(s) | 4100 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1839, 1871, 4015, 4047 |
| FaqI | GGGAC | 3 cut(s) | 2651, 3448, 3807 |
| FauI | CCCGC | 1 cut(s) | 2342 |
| FauNDI | CATATG | 1 cut(s) | 2934 |
| FbaI | TGATCA | 1 cut(s) | 2305 |
| FblI | GTMKAC | 2 cut(s) | 626, 2868 |
| FriOI | GRGCYC | 3 cut(s) | 614, 2020, 3799 |
| GsaI | CCCAGC | 1 cut(s) | 60 |
| GsuI | CTGGAG | 5 cut(s) | 273, 297, 746, 1654, 3810 |
| HaeIII | GGCC | 5 cut(s) | 375, 660, 1428, 2604, 3624 |
| HapII | CCGG | 5 cut(s) | 782, 2155, 3462, 3560, 4040 |
| Hin1I | GRCGYC | 1 cut(s) | 144 |
| HincII | GTYRAC | 4 cut(s) | 627, 1196, 1897, 2476 |
| HindII | GTYRAC | 4 cut(s) | 627, 1196, 1897, 2476 |
| HindIII | AAGCTT | 3 cut(s) | 1721, 1853, 2461 |
| HpaI | GTTAAC | 2 cut(s) | 1897, 2476 |
| HpaII | CCGG | 5 cut(s) | 782, 2155, 3462, 3560, 4040 |
| HphI | GGTGA | 9 cut(s) | 798, 1546, 2478, 2750, 3261, 3285, 3416, 3520, 3533 |
| Hpy99I | CGWCG | 2 cut(s) | 146, 149 |
| HpyCH4III | ACNGT | 8 cut(s) | 356, 650, 668, 2211, 2738, 2993, 4054, 4196 |
| HpyCH4IV | ACGT | 3 cut(s) | 144, 3103, 3379 |
| HpySE526I | ACGT | 3 cut(s) | 144, 3103, 3379 |
| Hsp92I | GRCGYC | 1 cut(s) | 144 |
| Ksp22I | TGATCA | 1 cut(s) | 2305 |
| KspAI | GTTAAC | 2 cut(s) | 1897, 2476 |
| LguI | GCTCTTC | 2 cut(s) | 3071, 3217 |
| MaeII | ACGT | 3 cut(s) | 144, 3103, 3379 |
| MaeIII | GTNAC | 9 cut(s) | 380, 804, 1645, 1948, 2051, 2164, 2528, 3351, 3768 |
| MflI | RGATCY | 8 cut(s) | 820, 866, 893, 1759, 2861, 3176, 3717, 3997 |
| MhlI | GDGCHC | 8 cut(s) | 192, 614, 1695, 1711, 2020, 3799, 3976, 3987 |
| MlsI | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| MluNI | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| MlyI | GAGTC | 8 cut(s) | 304, 1463, 1546, 3047, 3148, 3359, 3808, 4220 |
| MmeI | TCCRAC | 2 cut(s) | 397, 844 |
| Mox20I | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| MroXI | GAANNNNTTC | 2 cut(s) | 430, 4027 |
| MscI | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2963, 3391 |
| Msp20I | TGGCCA | 3 cut(s) | 375, 1428, 3624 |
| MspA1I | CMGCKG | 3 cut(s) | 283, 2349, 2515 |
| MspCI | CTTAAG | 1 cut(s) | 1856 |
| MspI | CCGG | 5 cut(s) | 782, 2155, 3462, 3560, 4040 |
| Mva1269I | GAATGC | 1 cut(s) | 1171 |
| MvaI | CCWGG | 8 cut(s) | 925, 1643, 1672, 1977, 2145, 2259, 2343, 4139 |
| NciI | CCSGG | 3 cut(s) | 3463, 3561, 4040 |
| NdeI | CATATG | 1 cut(s) | 2934 |
| NmuCI | GTSAC | 5 cut(s) | 804, 2051, 2528, 3351, 3768 |
| NspI | RCATGY | 2 cut(s) | 2131, 2336 |
| PaeI | GCATGC | 2 cut(s) | 2131, 2336 |
| PciSI | GCTCTTC | 2 cut(s) | 3071, 3217 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 141, 159, 3823 |
| PctI | GAATGC | 1 cut(s) | 1171 |
| PdmI | GAANNNNTTC | 2 cut(s) | 430, 4027 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 881, 3788, 3836 |
| PinAI | ACCGGT | 1 cut(s) | 2154 |
| PleI | GAGTC | 8 cut(s) | 304, 1463, 1545, 3046, 3147, 3358, 3808, 4219 |
| PpsI | GAGTC | 8 cut(s) | 304, 1463, 1545, 3046, 3147, 3358, 3808, 4219 |
| Ppu21I | YACGTR | 1 cut(s) | 3380 |
| PpuMI | RGGWCCY | 1 cut(s) | 1638 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2058, 3363 |
| PshBI | ATTAAT | 1 cut(s) | 2027 |
| Psp124BI | GAGCTC | 1 cut(s) | 3799 |
| Psp5II | RGGWCCY | 1 cut(s) | 1638 |
| Psp6I | CCWGG | 8 cut(s) | 923, 1641, 1670, 1975, 2143, 2257, 2341, 4137 |
| PspFI | CCCAGC | 1 cut(s) | 56 |
| PspGI | CCWGG | 8 cut(s) | 923, 1641, 1670, 1975, 2143, 2257, 2341, 4137 |
| PspPPI | RGGWCCY | 1 cut(s) | 1638 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3937, 3969 |
| PstI | CTGCAG | 2 cut(s) | 229, 1894 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2006, 2515, 3836 |
| PsuI | RGATCY | 8 cut(s) | 820, 866, 893, 1759, 2861, 3176, 3717, 3997 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2963, 3391 |
| SacI | GAGCTC | 1 cut(s) | 3799 |
| SalI | GTCGAC | 1 cut(s) | 625 |
| SapI | GCTCTTC | 2 cut(s) | 3071, 3217 |
| ScaI | AGTACT | 2 cut(s) | 1504, 3333 |
| SchI | GAGTC | 8 cut(s) | 304, 1463, 1546, 3047, 3148, 3359, 3808, 4220 |
| SduI | GDGCHC | 8 cut(s) | 192, 614, 1695, 1711, 2020, 3799, 3976, 3987 |
| SfcI | CTRYAG | 6 cut(s) | 225, 646, 1212, 1890, 2992, 3273 |
| SinI | GGWCC | 9 cut(s) | 577, 722, 1045, 1516, 1638, 1985, 2729, 2747, 4144 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2963, 3391 |
| SmlI | CTYRAG | 6 cut(s) | 365, 590, 726, 1856, 2755, 4097 |
| SmoI | CTYRAG | 6 cut(s) | 365, 590, 726, 1856, 2755, 4097 |
| SnaBI | TACGTA | 1 cut(s) | 3380 |
| SpeI | ACTAGT | 2 cut(s) | 752, 3956 |
| SphI | GCATGC | 2 cut(s) | 2131, 2336 |
| SsiI | CCGC | 8 cut(s) | 283, 549, 2071, 2081, 2349, 2513, 4142, 4238 |
| SstI | GAGCTC | 1 cut(s) | 3799 |
| StyI | CCWWGG | 3 cut(s) | 875, 1634, 2227 |
| TaaI | ACNGT | 8 cut(s) | 356, 650, 668, 2211, 2738, 2993, 4054, 4196 |
| TaiI | ACGT | 3 cut(s) | 147, 3106, 3382 |
| TaqI | TCGA | 6 cut(s) | 135, 162, 626, 2794, 3427, 3739 |
| TatI | WGTACW | 5 cut(s) | 1502, 2559, 3331, 3913, 4121 |
| TauI | GCSGC | 3 cut(s) | 2074, 2515, 4241 |
| TseFI | GTSAC | 5 cut(s) | 804, 2051, 2528, 3351, 3768 |
| Tsp45I | GTSAC | 5 cut(s) | 804, 2051, 2528, 3351, 3768 |
| TspGWI | ACGGA | 6 cut(s) | 1998, 2563, 2742, 2854, 3151, 3403 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 881, 3788, 3836 |
| Vha464I | CTTAAG | 1 cut(s) | 1856 |
| VneI | GTGCAC | 1 cut(s) | 3972 |
| VpaK11BI | GGWCC | 9 cut(s) | 577, 722, 1045, 1516, 1638, 1985, 2729, 2747, 4144 |
| VspI | ATTAAT | 1 cut(s) | 2027 |
| XapI | RAATTY | 6 cut(s) | 171, 1629, 2320, 2928, 4151, 4221 |
| XbaI | TCTAGA | 2 cut(s) | 2657, 2885 |
| XceI | RCATGY | 2 cut(s) | 2131, 2336 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3605 |
| XmiI | GTMKAC | 2 cut(s) | 626, 2868 |
| XmnI | GAANNNNTTC | 2 cut(s) | 430, 4027 |
| ZraI | GACGTC | 1 cut(s) | 145 |
| ZrmI | AGTACT | 2 cut(s) | 1504, 3333 |