CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62900 AT3G62900 AT3G62900 |
| fragaria_vesca | FvH4_2g25070 |
| malus_domestica | MD03G1282000.v1.1 MD11G1301800.v1.1 |
| prunus_persica | Prupe.8G255400_v2.0.a1 |
| pyrus_communis | pycom03g22260 pycom03g22270 pycom03g22280 pycom11g26440 |
| rosa_chinensis | RchiOBHm_Chr6g0293091 |
| rosa_laevigata | RLG00000011972 |
| rosa_multiflora | Rmu_sc0001042.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00174420 |
| rosa_rugosa | Rorug06G0232700 |
| rosa_samantha | Rh6AG345500 Rh6BG353300 Rh6CG359700 Rh6DG345600 |
| rosa_wichuraiana | Rw6G030110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 387, 3234 |
| Acc36I | ACCTGC | 2 cut(s) | 424, 3085 |
| AccB1I | GGYRCC | 1 cut(s) | 454 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1508, 3704 |
| AccI | GTMKAC | 2 cut(s) | 578, 4260 |
| AccII | CGCG | 2 cut(s) | 4008, 4534 |
| AccIII | TCCGGA | 2 cut(s) | 3641, 4476 |
| AclWI | GGATC | 7 cut(s) | 571, 2373, 2493, 2719, 3253, 3378, 3993 |
| AcuI | CTGAAG | 6 cut(s) | 636, 701, 1215, 2232, 3822, 3839 |
| AflII | CTTAAG | 1 cut(s) | 1367 |
| AhlI | ACTAGT | 1 cut(s) | 3962 |
| AjnI | CCWGG | 7 cut(s) | 1675, 1789, 1861, 3048, 3905, 3951, 4327 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 33, 65, 2690, 2722, 3128, 3160 |
| Alw21I | GWGCWC | 3 cut(s) | 1253, 3970, 4180 |
| Alw26I | GTCTC | 8 cut(s) | 279, 291, 1420, 2016, 2160, 2824, 3027, 3716 |
| AlwI | GGATC | 7 cut(s) | 571, 2373, 2493, 2719, 3253, 3378, 3993 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1193, 2498 |
| Ama87I | CYCGRG | 4 cut(s) | 681, 1148, 2187, 3398 |
| Aor13HI | TCCGGA | 2 cut(s) | 3641, 4476 |
| AoxI | GGCC | 6 cut(s) | 610, 970, 1517, 3336, 3535, 4221 |
| ApaI | GGGCCC | 1 cut(s) | 1521 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2893, 2925 |
| AseI | ATTAAT | 1 cut(s) | 2226 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 801, 3481 |
| AspS9I | GGNCC | 8 cut(s) | 413, 970, 1060, 1517, 1518, 2276, 2875, 3536 |
| AsuC2I | CCSGG | 6 cut(s) | 1149, 1150, 1628, 3399, 3400, 4021 |
| AvaI | CYCGRG | 4 cut(s) | 681, 1148, 2187, 3398 |
| AvaII | GGWCC | 4 cut(s) | 413, 1060, 2276, 2875 |
| BaeGI | GKGCMC | 3 cut(s) | 1239, 1521, 3900 |
| BanI | GGYRCC | 1 cut(s) | 454 |
| BanII | GRGCYC | 5 cut(s) | 1521, 1552, 2118, 3715, 4612 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4629, 4661 |
| BbsI | GAAGAC | 3 cut(s) | 302, 621, 3024 |
| Bbv12I | GWGCWC | 3 cut(s) | 1253, 3970, 4180 |
| BceAI | ACGGC | 2 cut(s) | 957, 4673 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2957, 2991 |
| BciT130I | CCWGG | 7 cut(s) | 1677, 1791, 1863, 3050, 3907, 3953, 4329 |
| BciVI | GTATCC | 5 cut(s) | 67, 1149, 1282, 3266, 4473 |
| BclI | TGATCA | 1 cut(s) | 1276 |
| BcnI | CCSGG | 6 cut(s) | 1149, 1150, 1628, 3399, 3400, 4021 |
| BcoDI | GTCTC | 8 cut(s) | 279, 291, 1420, 2016, 2160, 2824, 3027, 3716 |
| BcuI | ACTAGT | 1 cut(s) | 3962 |
| BfmI | CTRYAG | 7 cut(s) | 319, 598, 1401, 1542, 2295, 2466, 2979 |
| BfrI | CTTAAG | 1 cut(s) | 1367 |
| BfuAI | ACCTGC | 2 cut(s) | 424, 3085 |
| BfuI | GTATCC | 5 cut(s) | 67, 1149, 1282, 3266, 4473 |
| BglII | AGATCT | 1 cut(s) | 1300 |
| BlpI | GCTNAGC | 2 cut(s) | 2045, 4575 |
| Bme18I | GGWCC | 4 cut(s) | 413, 1060, 2276, 2875 |
| BmeT110I | CYCGRG | 4 cut(s) | 681, 1148, 2187, 3398 |
| BmgT120I | GGNCC | 8 cut(s) | 413, 970, 1060, 1517, 1518, 2276, 2875, 3536 |
| BmrI | ACTGGG | 2 cut(s) | 1181, 3177 |
| BmuI | ACTGGG | 2 cut(s) | 1181, 3177 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1590 |
| BpiI | GAAGAC | 3 cut(s) | 302, 621, 3024 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 814, 846 |
| BpmI | CTGGAG | 2 cut(s) | 261, 3928 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3981 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2045, 4575 |
| BpuEI | CTTGAG | 3 cut(s) | 374, 1198, 2269 |
| BpuMI | CCSGG | 6 cut(s) | 1149, 1150, 1628, 3399, 3400, 4021 |
| Bsa29I | ATCGAT | 3 cut(s) | 135, 153, 2971 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2004, 2242, 3063 |
| BsaI | GGTCTC | 4 cut(s) | 279, 291, 3027, 3716 |
| BsaWI | WCCGGW | 4 cut(s) | 736, 2670, 3641, 4476 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1534, 1564 |
| Bse118I | RCCGGY | 1 cut(s) | 4680 |
| Bse3DI | GCAATG | 2 cut(s) | 4518, 4671 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2004, 2242, 3063 |
| BseAI | TCCGGA | 2 cut(s) | 3641, 4476 |
| BseBI | CCWGG | 7 cut(s) | 1677, 1791, 1863, 3050, 3907, 3953, 4329 |
| BseCI | ATCGAT | 3 cut(s) | 135, 153, 2971 |
| BseJI | GATNNNNATC | 3 cut(s) | 2004, 2242, 3063 |
| BseMI | GCAATG | 2 cut(s) | 4518, 4671 |
| BseRI | GAGGAG | 4 cut(s) | 477, 996, 2522, 2737 |
| BseSI | GKGCMC | 3 cut(s) | 1239, 1521, 3900 |
| BsgI | GTGCAG | 2 cut(s) | 1539, 1988 |
| Bsh1236I | CGCG | 2 cut(s) | 4008, 4534 |
| Bsh1285I | CGRYCG | 3 cut(s) | 885, 2527, 2971 |
| BshFI | GGCC | 6 cut(s) | 612, 972, 1519, 3338, 3537, 4223 |
| BshNI | GGYRCC | 1 cut(s) | 454 |
| BshVI | ATCGAT | 3 cut(s) | 135, 153, 2971 |
| BsiEI | CGRYCG | 3 cut(s) | 885, 2527, 2971 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1253, 3970, 4180 |
| BsiHKCI | CYCGRG | 4 cut(s) | 681, 1148, 2187, 3398 |
| BslFI | GGGAC | 4 cut(s) | 192, 2888, 3953, 4449 |
| BsmAI | GTCTC | 8 cut(s) | 279, 291, 1420, 2016, 2160, 2824, 3027, 3716 |
| BsmBI | CGTCTC | 1 cut(s) | 2824 |
| BsmFI | GGGAC | 4 cut(s) | 192, 2888, 3953, 4449 |
| BsnI | GGCC | 6 cut(s) | 612, 972, 1519, 3338, 3537, 4223 |
| Bso31I | GGTCTC | 4 cut(s) | 279, 291, 3027, 3716 |
| BsoBI | CYCGRG | 4 cut(s) | 681, 1148, 2187, 3398 |
| Bsp120I | GGGCCC | 1 cut(s) | 1517 |
| Bsp13I | TCCGGA | 2 cut(s) | 3641, 4476 |
| Bsp1407I | TGTACA | 1 cut(s) | 2716 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2045, 4575 |
| Bsp19I | CCATGG | 2 cut(s) | 837, 3385 |
| BspANI | GGCC | 6 cut(s) | 612, 972, 1519, 3338, 3537, 4223 |
| BspDI | ATCGAT | 3 cut(s) | 135, 153, 2971 |
| BspEI | TCCGGA | 2 cut(s) | 3641, 4476 |
| BspFNI | CGCG | 2 cut(s) | 4008, 4534 |
| BspHI | TCATGA | 4 cut(s) | 673, 766, 3025, 4180 |
| BspMAI | CTGCAG | 1 cut(s) | 2299 |
| BspMI | ACCTGC | 2 cut(s) | 424, 3085 |
| BspPI | GGATC | 7 cut(s) | 571, 2373, 2493, 2719, 3253, 3378, 3993 |
| BspQI | GCTCTTC | 2 cut(s) | 109, 1241 |
| BspT107I | GGYRCC | 1 cut(s) | 454 |
| BspTI | CTTAAG | 1 cut(s) | 1367 |
| BspTNI | GGTCTC | 4 cut(s) | 279, 291, 3027, 3716 |
| BsrDI | GCAATG | 2 cut(s) | 4518, 4671 |
| BsrFI | RCCGGY | 1 cut(s) | 4680 |
| BsrGI | TGTACA | 1 cut(s) | 2716 |
| BssAI | RCCGGY | 1 cut(s) | 4680 |
| BssNAI | GTATAC | 1 cut(s) | 4261 |
| BssT1I | CCWWGG | 4 cut(s) | 837, 3385, 4197, 4407 |
| Bst1107I | GTATAC | 1 cut(s) | 4261 |
| Bst2UI | CCWGG | 7 cut(s) | 1677, 1791, 1863, 3050, 3907, 3953, 4329 |
| Bst6I | CTCTTC | 7 cut(s) | 109, 768, 1241, 1353, 1976, 2158, 3283 |
| BstAFI | CTTAAG | 1 cut(s) | 1367 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4670 |
| BstAUI | TGTACA | 1 cut(s) | 2716 |
| BstDSI | CCRYGG | 3 cut(s) | 837, 3006, 3385 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1542, 2122 |
| BstFNI | CGCG | 2 cut(s) | 4008, 4534 |
| BstMAI | GTCTC | 8 cut(s) | 279, 291, 1420, 2016, 2160, 2824, 3027, 3716 |
| BstMCI | CGRYCG | 3 cut(s) | 885, 2527, 2971 |
| BstNI | CCWGG | 7 cut(s) | 1677, 1791, 1863, 3050, 3907, 3953, 4329 |
| BstNSI | RCATGY | 6 cut(s) | 1259, 1663, 1870, 2333, 4138, 4274 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1590 |
| BstSFI | CTRYAG | 7 cut(s) | 319, 598, 1401, 1542, 2295, 2466, 2979 |
| BstSLI | GKGCMC | 3 cut(s) | 1239, 1521, 3900 |
| BstUI | CGCG | 2 cut(s) | 4008, 4534 |
| BstV2I | GAAGAC | 3 cut(s) | 302, 621, 3024 |
| BstX2I | RGATCY | 4 cut(s) | 1300, 2711, 3245, 3985 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 4204, 4433 |
| BstYI | RGATCY | 4 cut(s) | 1300, 2711, 3245, 3985 |
| BstZ17I | GTATAC | 1 cut(s) | 4261 |
| Bsu15I | ATCGAT | 3 cut(s) | 135, 153, 2971 |
| BsuI | GTATCC | 5 cut(s) | 67, 1149, 1282, 3266, 4473 |
| BsuRI | GGCC | 6 cut(s) | 612, 972, 1519, 3338, 3537, 4223 |
| BsuTUI | ATCGAT | 3 cut(s) | 135, 153, 2971 |
| BtgI | CCRYGG | 3 cut(s) | 837, 3006, 3385 |
| BtgZI | GCGATG | 2 cut(s) | 954, 3090 |
| BtsI | GCAGTG | 1 cut(s) | 2015 |
| BveI | ACCTGC | 2 cut(s) | 424, 3085 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1193, 2498 |
| CciI | TCATGA | 4 cut(s) | 673, 766, 3025, 4180 |
| Cfr10I | RCCGGY | 1 cut(s) | 4680 |
| Cfr13I | GGNCC | 8 cut(s) | 413, 970, 1060, 1517, 1518, 2276, 2875, 3536 |
| Cfr9I | CCCGGG | 2 cut(s) | 1148, 3398 |
| ClaI | ATCGAT | 3 cut(s) | 135, 153, 2971 |
| CseI | GACGC | 2 cut(s) | 3997, 4509 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 421, 456, 2575, 2610 |
| DraI | TTTAAA | 2 cut(s) | 1044, 2148 |
| Eam1104I | CTCTTC | 7 cut(s) | 109, 768, 1241, 1353, 1976, 2158, 3283 |
| EarI | CTCTTC | 7 cut(s) | 109, 768, 1241, 1353, 1976, 2158, 3283 |
| Eco130I | CCWWGG | 4 cut(s) | 837, 3385, 4197, 4407 |
| Eco24I | GRGCYC | 5 cut(s) | 1521, 1552, 2118, 3715, 4612 |
| Eco31I | GGTCTC | 4 cut(s) | 279, 291, 3027, 3716 |
| Eco32I | GATATC | 2 cut(s) | 669, 3115 |
| Eco47I | GGWCC | 4 cut(s) | 413, 1060, 2276, 2875 |
| Eco57I | CTGAAG | 6 cut(s) | 636, 701, 1215, 2232, 3822, 3839 |
| Eco88I | CYCGRG | 4 cut(s) | 681, 1148, 2187, 3398 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1542, 2122 |
| EcoO109I | RGGNCCY | 3 cut(s) | 413, 2276, 2875 |
| EcoRI | GAATTC | 3 cut(s) | 162, 3343, 3595 |
| EcoRII | CCWGG | 7 cut(s) | 1675, 1789, 1861, 3048, 3905, 3951, 4327 |
| EcoRV | GATATC | 2 cut(s) | 669, 3115 |
| EcoT14I | CCWWGG | 4 cut(s) | 837, 3385, 4197, 4407 |
| EcoT22I | ATGCAT | 1 cut(s) | 4235 |
| EcoT38I | GRGCYC | 5 cut(s) | 1521, 1552, 2118, 3715, 4612 |
| ErhI | CCWWGG | 4 cut(s) | 837, 3385, 4197, 4407 |
| Esp3I | CGTCTC | 1 cut(s) | 2824 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1350, 1382, 4385, 4417 |
| FaqI | GGGAC | 4 cut(s) | 192, 2888, 3953, 4449 |
| FauNDI | CATATG | 1 cut(s) | 1615 |
| FbaI | TGATCA | 1 cut(s) | 1276 |
| FblI | GTMKAC | 2 cut(s) | 578, 4260 |
| FriOI | GRGCYC | 5 cut(s) | 1521, 1552, 2118, 3715, 4612 |
| GsuI | CTGGAG | 2 cut(s) | 261, 3928 |
| HaeIII | GGCC | 6 cut(s) | 612, 972, 1519, 3338, 3537, 4223 |
| HgaI | GACGC | 2 cut(s) | 3997, 4509 |
| HincII | GTYRAC | 5 cut(s) | 365, 579, 1408, 4026, 4390 |
| HindII | GTYRAC | 5 cut(s) | 365, 579, 1408, 4026, 4390 |
| HindIII | AAGCTT | 6 cut(s) | 96, 800, 1038, 1364, 1990, 2855 |
| HpaI | GTTAAC | 1 cut(s) | 1408 |
| Hpy99I | CGWCG | 1 cut(s) | 4525 |
| HpyCH4IV | ACGT | 4 cut(s) | 367, 945, 1504, 4632 |
| HpySE526I | ACGT | 4 cut(s) | 367, 945, 1504, 4632 |
| Kpn2I | TCCGGA | 2 cut(s) | 3641, 4476 |
| Ksp22I | TGATCA | 1 cut(s) | 1276 |
| KspAI | GTTAAC | 1 cut(s) | 1408 |
| LguI | GCTCTTC | 2 cut(s) | 109, 1241 |
| LmnI | GCTCC | 6 cut(s) | 490, 1555, 1895, 2750, 3306, 3773 |
| MaeII | ACGT | 4 cut(s) | 367, 945, 1504, 4632 |
| MfeI | CAATTG | 3 cut(s) | 1461, 2254, 4316 |
| MflI | RGATCY | 4 cut(s) | 1300, 2711, 3245, 3985 |
| MmeI | TCCRAC | 3 cut(s) | 38, 153, 4071 |
| Mph1103I | ATGCAT | 1 cut(s) | 4235 |
| MroI | TCCGGA | 2 cut(s) | 3641, 4476 |
| MroXI | GAANNNNTTC | 2 cut(s) | 801, 3481 |
| MslI | CAYNNNNRTG | 7 cut(s) | 114, 2066, 2226, 4139, 4185, 4238, 4275 |
| MspA1I | CMGCKG | 3 cut(s) | 271, 3749, 4550 |
| MspCI | CTTAAG | 1 cut(s) | 1367 |
| MunI | CAATTG | 3 cut(s) | 1461, 2254, 4316 |
| MvaI | CCWGG | 7 cut(s) | 1677, 1791, 1863, 3050, 3907, 3953, 4329 |
| MvnI | CGCG | 2 cut(s) | 4008, 4534 |
| NciI | CCSGG | 6 cut(s) | 1149, 1150, 1628, 3399, 3400, 4021 |
| NcoI | CCATGG | 2 cut(s) | 837, 3385 |
| NdeI | CATATG | 1 cut(s) | 1615 |
| NmeAIII | GCCGAG | 1 cut(s) | 469 |
| NmuCI | GTSAC | 8 cut(s) | 756, 1010, 1583, 2057, 2132, 2325, 2895, 3684 |
| NsiI | ATGCAT | 1 cut(s) | 4235 |
| NspI | RCATGY | 6 cut(s) | 1259, 1663, 1870, 2333, 4138, 4274 |
| PaeI | GCATGC | 4 cut(s) | 1259, 1663, 1870, 4138 |
| PaeR7I | CTCGAG | 2 cut(s) | 681, 2187 |
| PagI | TCATGA | 4 cut(s) | 673, 766, 3025, 4180 |
| PciSI | GCTCTTC | 2 cut(s) | 109, 1241 |
| PdmI | GAANNNNTTC | 2 cut(s) | 801, 3481 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1508, 3704 |
| PfoI | TCCNGGA | 1 cut(s) | 3048 |
| Ple19I | CGATCG | 1 cut(s) | 2971 |
| PpuMI | RGGWCCY | 3 cut(s) | 413, 2276, 2875 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1590 |
| PshBI | ATTAAT | 1 cut(s) | 2226 |
| PsiI | TTATAA | 2 cut(s) | 387, 3234 |
| Psp5II | RGGWCCY | 3 cut(s) | 413, 2276, 2875 |
| Psp6I | CCWGG | 7 cut(s) | 1675, 1789, 1861, 3048, 3905, 3951, 4327 |
| PspGI | CCWGG | 7 cut(s) | 1675, 1789, 1861, 3048, 3905, 3951, 4327 |
| PspOMI | GGGCCC | 1 cut(s) | 1517 |
| PspPI | GGNCC | 8 cut(s) | 413, 970, 1060, 1517, 1518, 2276, 2875, 3536 |
| PspPPI | RGGWCCY | 3 cut(s) | 413, 2276, 2875 |
| PstI | CTGCAG | 1 cut(s) | 2299 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1193, 2498 |
| PsuI | RGATCY | 4 cut(s) | 1300, 2711, 3245, 3985 |
| PvuI | CGATCG | 1 cut(s) | 2971 |
| PvuII | CAGCTG | 2 cut(s) | 3749, 4550 |
| RseI | CAYNNNNRTG | 7 cut(s) | 114, 2066, 2226, 4139, 4185, 4238, 4275 |
| SalI | GTCGAC | 1 cut(s) | 577 |
| SapI | GCTCTTC | 2 cut(s) | 109, 1241 |
| Sau96I | GGNCC | 8 cut(s) | 413, 970, 1060, 1517, 1518, 2276, 2875, 3536 |
| SfcI | CTRYAG | 7 cut(s) | 319, 598, 1401, 1542, 2295, 2466, 2979 |
| Sfr274I | CTCGAG | 2 cut(s) | 681, 2187 |
| SinI | GGWCC | 4 cut(s) | 413, 1060, 2276, 2875 |
| SlaI | CTCGAG | 2 cut(s) | 681, 2187 |
| SmaI | CCCGGG | 2 cut(s) | 1150, 3400 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 114, 2066, 2226, 4139, 4185, 4238, 4275 |
| SmlI | CTYRAG | 6 cut(s) | 353, 681, 1213, 1367, 2187, 2284 |
| SmoI | CTYRAG | 6 cut(s) | 353, 681, 1213, 1367, 2187, 2284 |
| SpeI | ACTAGT | 1 cut(s) | 3962 |
| SphI | GCATGC | 4 cut(s) | 1259, 1663, 1870, 4138 |
| SspI | AATATT | 1 cut(s) | 4099 |
| StyI | CCWWGG | 4 cut(s) | 837, 3385, 4197, 4407 |
| TaiI | ACGT | 4 cut(s) | 370, 948, 1507, 4635 |
| TaqII | GACCGA | 1 cut(s) | 871 |
| TatI | WGTACW | 3 cut(s) | 1412, 2088, 2716 |
| TauI | GCSGC | 3 cut(s) | 1606, 4061, 4537 |
| TseFI | GTSAC | 8 cut(s) | 756, 1010, 1583, 2057, 2132, 2325, 2895, 3684 |
| Tsp45I | GTSAC | 8 cut(s) | 756, 1010, 1583, 2057, 2132, 2325, 2895, 3684 |
| TspGWI | ACGGA | 3 cut(s) | 2092, 2161, 2806 |
| TspMI | CCCGGG | 2 cut(s) | 1148, 3398 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1508, 3704 |
| Vha464I | CTTAAG | 1 cut(s) | 1367 |
| VpaK11BI | GGWCC | 4 cut(s) | 413, 1060, 2276, 2875 |
| VspI | ATTAAT | 1 cut(s) | 2226 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1542, 2122 |
| XbaI | TCTAGA | 1 cut(s) | 2405 |
| XceI | RCATGY | 6 cut(s) | 1259, 1663, 1870, 2333, 4138, 4274 |
| XhoI | CTCGAG | 2 cut(s) | 681, 2187 |
| XmaI | CCCGGG | 2 cut(s) | 1148, 3398 |
| XmiI | GTMKAC | 2 cut(s) | 578, 4260 |
| XmnI | GAANNNNTTC | 2 cut(s) | 801, 3481 |
| Zsp2I | ATGCAT | 1 cut(s) | 4235 |