CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62900 AT3G62900 AT3G62900 |
| fragaria_vesca | FvH4_2g25070 |
| malus_domestica | MD03G1282000.v1.1 MD11G1301800.v1.1 |
| prunus_persica | Prupe.8G255400_v2.0.a1 |
| pyrus_communis | pycom03g22260 pycom03g22270 pycom03g22280 pycom11g26440 |
| rosa_chinensis | RchiOBHm_Chr6g0293091 |
| rosa_laevigata | RLG00000011972 |
| rosa_multiflora | Rmu_sc0001042.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00174420 |
| rosa_rugosa | Rorug06G0232700 |
| rosa_samantha | Rh6AG345500 Rh6BG353300 Rh6CG359700 Rh6DG345600 |
| rosa_wichuraiana | Rw6G030110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 4466 |
| AccB1I | GGYRCC | 2 cut(s) | 466, 2205 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 881, 3695, 3743 |
| AccI | GTMKAC | 4 cut(s) | 626, 2775, 3575, 4377 |
| AccII | CGCG | 1 cut(s) | 3295 |
| AccIII | TCCGGA | 1 cut(s) | 4687 |
| AciI | CCGC | 7 cut(s) | 283, 1978, 1988, 2256, 3293, 3295, 4049 |
| AcoI | YGGCCR | 2 cut(s) | 373, 1333 |
| AcsI | RAATTY | 7 cut(s) | 171, 1536, 2227, 2835, 4058, 4128, 4475 |
| AcuI | CTGAAG | 9 cut(s) | 681, 1434, 1578, 1642, 1773, 2378, 2706, 3813, 4259 |
| AcvI | CACGTG | 1 cut(s) | 4523 |
| AfeI | AGCGCT | 1 cut(s) | 4012 |
| AflII | CTTAAG | 1 cut(s) | 1763 |
| AflIII | ACRYGT | 1 cut(s) | 4522 |
| AgeI | ACCGGT | 1 cut(s) | 2061 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 777, 3571 |
| AhlI | ACTAGT | 2 cut(s) | 752, 3863 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3062, 3094 |
| Alw21I | GWGCWC | 4 cut(s) | 1618, 3706, 3883, 4168 |
| Alw26I | GTCTC | 6 cut(s) | 291, 303, 553, 1275, 2754, 4007 |
| Alw44I | GTGCAC | 1 cut(s) | 3879 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1913, 2422, 3599, 3743, 4541 |
| Ama87I | CYCGRG | 2 cut(s) | 365, 3242 |
| Aor13HI | TCCGGA | 1 cut(s) | 4687 |
| Aor51HI | AGCGCT | 1 cut(s) | 4012 |
| AoxI | GGCC | 4 cut(s) | 373, 658, 1333, 3529 |
| ApaLI | GTGCAC | 1 cut(s) | 3879 |
| ApoI | RAATTY | 7 cut(s) | 171, 1536, 2227, 2835, 4058, 4128, 4475 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1429, 1461, 3242, 3274 |
| AseI | ATTAAT | 1 cut(s) | 1934 |
| AsiGI | ACCGGT | 1 cut(s) | 2061 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 430, 3934 |
| AspLEI | GCGC | 2 cut(s) | 4013, 4467 |
| AsuC2I | CCSGG | 3 cut(s) | 3370, 3468, 3947 |
| AvaI | CYCGRG | 2 cut(s) | 365, 3242 |
| AxyI | CCTNAGG | 1 cut(s) | 816 |
| BaeGI | GKGCMC | 3 cut(s) | 1602, 3883, 3894 |
| BalI | TGGCCA | 2 cut(s) | 375, 1335 |
| BamHI | GGATCC | 2 cut(s) | 2768, 3624 |
| BanI | GGYRCC | 2 cut(s) | 466, 2205 |
| BanII | GRGCYC | 4 cut(s) | 614, 1927, 3706, 4600 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 661, 693, 2450, 2482, 4232, 4264 |
| BbrPI | CACGTG | 1 cut(s) | 4523 |
| BbsI | GAAGAC | 2 cut(s) | 1947, 3606 |
| Bbv12I | GWGCWC | 4 cut(s) | 1618, 3706, 3883, 4168 |
| BbvCI | CCTCAGC | 1 cut(s) | 4369 |
| BceAI | ACGGC | 5 cut(s) | 614, 3337, 3360, 4659, 4661 |
| BciVI | GTATCC | 3 cut(s) | 540, 1678, 3646 |
| BclI | TGATCA | 1 cut(s) | 2212 |
| BcnI | CCSGG | 3 cut(s) | 3370, 3468, 3947 |
| BcoDI | GTCTC | 6 cut(s) | 291, 303, 553, 1275, 2754, 4007 |
| BcuI | ACTAGT | 2 cut(s) | 752, 3863 |
| BfmI | CTRYAG | 5 cut(s) | 225, 646, 1797, 3180, 4143 |
| BfoI | RGCGCY | 1 cut(s) | 4014 |
| BfrI | CTTAAG | 1 cut(s) | 1763 |
| BfuI | GTATCC | 3 cut(s) | 540, 1678, 3646 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1262 |
| BglII | AGATCT | 1 cut(s) | 866 |
| BlpI | GCTNAGC | 1 cut(s) | 2423 |
| BmcAI | AGTACT | 2 cut(s) | 1411, 3240 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 777, 3571 |
| BmeT110I | CYCGRG | 2 cut(s) | 365, 3242 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1965, 3270 |
| BpiI | GAAGAC | 2 cut(s) | 1947, 3606 |
| BpmI | CTGGAG | 6 cut(s) | 273, 297, 746, 1561, 3717, 4244 |
| Bpu10I | CCTNAGC | 2 cut(s) | 602, 4369 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2423 |
| BpuEI | CTTGAG | 4 cut(s) | 575, 711, 2647, 3989 |
| BpuMI | CCSGG | 3 cut(s) | 3370, 3468, 3947 |
| Bsa29I | ATCGAT | 2 cut(s) | 162, 3334 |
| BsaAI | YACGTR | 2 cut(s) | 3287, 4523 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1335, 1848, 4491, 4710 |
| BsaI | GGTCTC | 3 cut(s) | 291, 303, 553 |
| BsaWI | WCCGGW | 2 cut(s) | 2061, 4687 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1909, 1939 |
| Bse118I | RCCGGY | 1 cut(s) | 2061 |
| Bse21I | CCTNAGG | 1 cut(s) | 816 |
| Bse3DI | GCAATG | 4 cut(s) | 2596, 2865, 4506, 4659 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1335, 1848, 4491, 4710 |
| BseAI | TCCGGA | 1 cut(s) | 4687 |
| BseCI | ATCGAT | 2 cut(s) | 162, 3334 |
| BseJI | GATNNNNATC | 4 cut(s) | 1335, 1848, 4491, 4710 |
| BseMI | GCAATG | 4 cut(s) | 2596, 2865, 4506, 4659 |
| BseRI | GAGGAG | 4 cut(s) | 1088, 2093, 2894, 3714 |
| BseSI | GKGCMC | 3 cut(s) | 1602, 3883, 3894 |
| BseYI | CCCAGC | 1 cut(s) | 56 |
| BsgI | GTGCAG | 1 cut(s) | 1973 |
| Bsh1236I | CGCG | 1 cut(s) | 3295 |
| BshFI | GGCC | 4 cut(s) | 375, 660, 1335, 3531 |
| BshNI | GGYRCC | 2 cut(s) | 466, 2205 |
| BshTI | ACCGGT | 1 cut(s) | 2061 |
| BshVI | ATCGAT | 2 cut(s) | 162, 3334 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1618, 3706, 3883, 4168 |
| BsiHKCI | CYCGRG | 2 cut(s) | 365, 3242 |
| BsiSI | CCGG | 5 cut(s) | 2062, 3369, 3467, 3947, 4688 |
| BslFI | GGGAC | 5 cut(s) | 201, 2558, 3355, 3714, 4437 |
| BsmAI | GTCTC | 6 cut(s) | 291, 303, 553, 1275, 2754, 4007 |
| BsmBI | CGTCTC | 1 cut(s) | 4007 |
| BsmFI | GGGAC | 5 cut(s) | 201, 2558, 3355, 3714, 4437 |
| BsmI | GAATGC | 3 cut(s) | 1171, 4258, 4580 |
| BsnI | GGCC | 4 cut(s) | 375, 660, 1335, 3531 |
| Bso31I | GGTCTC | 3 cut(s) | 291, 303, 553 |
| BsoBI | CYCGRG | 2 cut(s) | 365, 3242 |
| Bsp1286I | GDGCHC | 9 cut(s) | 614, 1602, 1618, 1927, 3706, 3883, 3894, 4168, 4600 |
| Bsp13I | TCCGGA | 1 cut(s) | 4687 |
| Bsp1407I | TGTACA | 1 cut(s) | 4489 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2423 |
| BspACI | CCGC | 7 cut(s) | 283, 1978, 1988, 2256, 3293, 3295, 4049 |
| BspANI | GGCC | 4 cut(s) | 375, 660, 1335, 3531 |
| BspDI | ATCGAT | 2 cut(s) | 162, 3334 |
| BspEI | TCCGGA | 1 cut(s) | 4687 |
| BspFNI | CGCG | 1 cut(s) | 3295 |
| BspHI | TCATGA | 1 cut(s) | 4168 |
| BspMAI | CTGCAG | 3 cut(s) | 229, 1801, 4147 |
| BspQI | GCTCTTC | 2 cut(s) | 2978, 3124 |
| BspT107I | GGYRCC | 2 cut(s) | 466, 2205 |
| BspTI | CTTAAG | 1 cut(s) | 1763 |
| BspTNI | GGTCTC | 3 cut(s) | 291, 303, 553 |
| BsrDI | GCAATG | 4 cut(s) | 2596, 2865, 4506, 4659 |
| BsrFI | RCCGGY | 1 cut(s) | 2061 |
| BsrGI | TGTACA | 1 cut(s) | 4489 |
| BssAI | RCCGGY | 1 cut(s) | 2061 |
| BssT1I | CCWWGG | 4 cut(s) | 875, 1541, 2134, 4395 |
| Bst4CI | ACNGT | 8 cut(s) | 356, 650, 668, 1840, 2118, 3961, 4103, 4694 |
| BstAFI | CTTAAG | 1 cut(s) | 1763 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1913, 2245 |
| BstAUI | TGTACA | 1 cut(s) | 4489 |
| BstBAI | YACGTR | 2 cut(s) | 3287, 4523 |
| BstC8I | GCNNGC | 7 cut(s) | 2036, 2956, 3293, 3506, 4270, 4469, 4650 |
| BstDSI | CCRYGG | 2 cut(s) | 2632, 3293 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1917 |
| BstFNI | CGCG | 1 cut(s) | 3295 |
| BstH2I | RGCGCY | 1 cut(s) | 4014 |
| BstHHI | GCGC | 2 cut(s) | 4013, 4467 |
| BstMAI | GTCTC | 6 cut(s) | 291, 303, 553, 1275, 2754, 4007 |
| BstNSI | RCATGY | 3 cut(s) | 2038, 2243, 4471 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1965, 3270 |
| BstSFI | CTRYAG | 5 cut(s) | 225, 646, 1797, 3180, 4143 |
| BstSLI | GKGCMC | 3 cut(s) | 1602, 3883, 3894 |
| BstSNI | TACGTA | 1 cut(s) | 3287 |
| BstUI | CGCG | 1 cut(s) | 3295 |
| BstV2I | GAAGAC | 2 cut(s) | 1947, 3606 |
| BstX2I | RGATCY | 7 cut(s) | 820, 866, 1666, 2768, 3083, 3624, 3904 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 2022, 2231, 2440, 4192, 4421 |
| BstYI | RGATCY | 7 cut(s) | 820, 866, 1666, 2768, 3083, 3624, 3904 |
| Bsu15I | ATCGAT | 2 cut(s) | 162, 3334 |
| Bsu36I | CCTNAGG | 1 cut(s) | 816 |
| BsuI | GTATCC | 3 cut(s) | 540, 1678, 3646 |
| BsuRI | GGCC | 4 cut(s) | 375, 660, 1335, 3531 |
| BsuTUI | ATCGAT | 2 cut(s) | 162, 3334 |
| BtgI | CCRYGG | 2 cut(s) | 2632, 3293 |
| BtgZI | GCGATG | 1 cut(s) | 4239 |
| BtsI | GCAGTG | 5 cut(s) | 1961, 2451, 2877, 2971, 4140 |
| Cac8I | GCNNGC | 7 cut(s) | 2036, 2956, 3293, 3506, 4270, 4469, 4650 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1913, 2422, 3599, 3743, 4541 |
| CciI | TCATGA | 1 cut(s) | 4168 |
| CfoI | GCGC | 2 cut(s) | 4013, 4467 |
| Cfr10I | RCCGGY | 1 cut(s) | 2061 |
| Cfr42I | CCGCGG | 1 cut(s) | 3296 |
| ClaI | ATCGAT | 2 cut(s) | 162, 3334 |
| CseI | GACGC | 1 cut(s) | 4514 |
| CspAI | ACCGGT | 1 cut(s) | 2061 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2947, 2982 |
| DraI | TTTAAA | 3 cut(s) | 360, 1323, 2526 |
| DriI | GACNNNNNGTC | 2 cut(s) | 777, 3571 |
| EaeI | YGGCCR | 2 cut(s) | 373, 1333 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 777, 3571 |
| Ecl136II | GAGCTC | 1 cut(s) | 3704 |
| Eco105I | TACGTA | 1 cut(s) | 3287 |
| Eco130I | CCWWGG | 4 cut(s) | 875, 1541, 2134, 4395 |
| Eco24I | GRGCYC | 4 cut(s) | 614, 1927, 3706, 4600 |
| Eco31I | GGTCTC | 3 cut(s) | 291, 303, 553 |
| Eco32I | GATATC | 1 cut(s) | 643 |
| Eco47III | AGCGCT | 1 cut(s) | 4012 |
| Eco53kI | GAGCTC | 1 cut(s) | 3704 |
| Eco57I | CTGAAG | 9 cut(s) | 681, 1434, 1578, 1642, 1773, 2378, 2706, 3813, 4259 |
| Eco72I | CACGTG | 1 cut(s) | 4523 |
| Eco81I | CCTNAGG | 1 cut(s) | 816 |
| Eco88I | CYCGRG | 2 cut(s) | 365, 3242 |
| EcoICRI | GAGCTC | 1 cut(s) | 3704 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1917 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1545, 2510, 4310 |
| EcoRV | GATATC | 1 cut(s) | 643 |
| EcoT14I | CCWWGG | 4 cut(s) | 875, 1541, 2134, 4395 |
| EcoT22I | ATGCAT | 1 cut(s) | 4580 |
| EcoT38I | GRGCYC | 4 cut(s) | 614, 1927, 3706, 4600 |
| ErhI | CCWWGG | 4 cut(s) | 875, 1541, 2134, 4395 |
| Esp3I | CGTCTC | 1 cut(s) | 4007 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1746, 1778, 3922, 3954, 4373, 4405 |
| FaqI | GGGAC | 5 cut(s) | 201, 2558, 3355, 3714, 4437 |
| FauI | CCCGC | 2 cut(s) | 2249, 3300 |
| FauNDI | CATATG | 2 cut(s) | 1381, 2841 |
| FbaI | TGATCA | 1 cut(s) | 2212 |
| FblI | GTMKAC | 4 cut(s) | 626, 2775, 3575, 4377 |
| FriOI | GRGCYC | 4 cut(s) | 614, 1927, 3706, 4600 |
| FspAI | RTGCGCAY | 1 cut(s) | 4466 |
| FspI | TGCGCA | 1 cut(s) | 4466 |
| GlaI | GCGC | 2 cut(s) | 4012, 4466 |
| GsaI | CCCAGC | 1 cut(s) | 60 |
| GsuI | CTGGAG | 6 cut(s) | 273, 297, 746, 1561, 3717, 4244 |
| HaeII | RGCGCY | 1 cut(s) | 4014 |
| HaeIII | GGCC | 4 cut(s) | 375, 660, 1335, 3531 |
| HapII | CCGG | 5 cut(s) | 2062, 3369, 3467, 3947, 4688 |
| HgaI | GACGC | 1 cut(s) | 4514 |
| HhaI | GCGC | 2 cut(s) | 4013, 4467 |
| Hin6I | GCGC | 2 cut(s) | 4011, 4465 |
| HinP1I | GCGC | 2 cut(s) | 4011, 4465 |
| HincII | GTYRAC | 4 cut(s) | 627, 1196, 1804, 2383 |
| HindII | GTYRAC | 4 cut(s) | 627, 1196, 1804, 2383 |
| HindIII | AAGCTT | 3 cut(s) | 1628, 1760, 2368 |
| HpaI | GTTAAC | 2 cut(s) | 1804, 2383 |
| HpaII | CCGG | 5 cut(s) | 2062, 3369, 3467, 3947, 4688 |
| Hpy99I | CGWCG | 1 cut(s) | 146 |
| HpyCH4III | ACNGT | 8 cut(s) | 356, 650, 668, 1840, 2118, 3961, 4103, 4694 |
| HpyCH4IV | ACGT | 5 cut(s) | 144, 3010, 3286, 4522, 4636 |
| HpySE526I | ACGT | 5 cut(s) | 144, 3010, 3286, 4522, 4636 |
| HspAI | GCGC | 2 cut(s) | 4011, 4465 |
| Kpn2I | TCCGGA | 1 cut(s) | 4687 |
| Ksp22I | TGATCA | 1 cut(s) | 2212 |
| KspAI | GTTAAC | 2 cut(s) | 1804, 2383 |
| KspI | CCGCGG | 1 cut(s) | 3296 |
| LguI | GCTCTTC | 2 cut(s) | 2978, 3124 |
| MaeII | ACGT | 5 cut(s) | 144, 3010, 3286, 4522, 4636 |
| MfeI | CAATTG | 1 cut(s) | 1742 |
| MflI | RGATCY | 7 cut(s) | 820, 866, 1666, 2768, 3083, 3624, 3904 |
| MhlI | GDGCHC | 9 cut(s) | 614, 1602, 1618, 1927, 3706, 3883, 3894, 4168, 4600 |
| MlsI | TGGCCA | 2 cut(s) | 375, 1335 |
| MluNI | TGGCCA | 2 cut(s) | 375, 1335 |
| MlyI | GAGTC | 8 cut(s) | 304, 1370, 1655, 2954, 3055, 3266, 4127, 4693 |
| MmeI | TCCRAC | 1 cut(s) | 397 |
| Mox20I | TGGCCA | 2 cut(s) | 375, 1335 |
| Mph1103I | ATGCAT | 1 cut(s) | 4580 |
| MroI | TCCGGA | 1 cut(s) | 4687 |
| MroXI | GAANNNNTTC | 2 cut(s) | 430, 3934 |
| MscI | TGGCCA | 2 cut(s) | 375, 1335 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2870, 4173, 4263 |
| Msp20I | TGGCCA | 2 cut(s) | 375, 1335 |
| MspA1I | CMGCKG | 5 cut(s) | 283, 2256, 2422, 3295, 4538 |
| MspCI | CTTAAG | 1 cut(s) | 1763 |
| MspI | CCGG | 5 cut(s) | 2062, 3369, 3467, 3947, 4688 |
| MunI | CAATTG | 1 cut(s) | 1742 |
| Mva1269I | GAATGC | 3 cut(s) | 1171, 4258, 4580 |
| MvnI | CGCG | 1 cut(s) | 3295 |
| NciI | CCSGG | 3 cut(s) | 3370, 3468, 3947 |
| NdeI | CATATG | 2 cut(s) | 1381, 2841 |
| NmuCI | GTSAC | 5 cut(s) | 804, 1958, 2435, 3258, 3675 |
| NsbI | TGCGCA | 1 cut(s) | 4466 |
| NsiI | ATGCAT | 1 cut(s) | 4580 |
| NspI | RCATGY | 3 cut(s) | 2038, 2243, 4471 |
| PaeI | GCATGC | 2 cut(s) | 2038, 4471 |
| PaeR7I | CTCGAG | 1 cut(s) | 365 |
| PagI | TCATGA | 1 cut(s) | 4168 |
| PciSI | GCTCTTC | 2 cut(s) | 2978, 3124 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 159, 3730 |
| PctI | GAATGC | 3 cut(s) | 1171, 4258, 4580 |
| PdmI | GAANNNNTTC | 2 cut(s) | 430, 3934 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 881, 3695, 3743 |
| PinAI | ACCGGT | 1 cut(s) | 2061 |
| PleI | GAGTC | 8 cut(s) | 304, 1370, 1654, 2953, 3054, 3265, 4126, 4692 |
| PmaCI | CACGTG | 1 cut(s) | 4523 |
| PmlI | CACGTG | 1 cut(s) | 4523 |
| PpsI | GAGTC | 8 cut(s) | 304, 1370, 1654, 2953, 3054, 3265, 4126, 4692 |
| Ppu21I | YACGTR | 2 cut(s) | 3287, 4523 |
| PpuMI | RGGWCCY | 3 cut(s) | 1545, 2510, 4310 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1965, 3270 |
| PshBI | ATTAAT | 1 cut(s) | 1934 |
| Psp124BI | GAGCTC | 1 cut(s) | 3706 |
| Psp5II | RGGWCCY | 3 cut(s) | 1545, 2510, 4310 |
| PspCI | CACGTG | 1 cut(s) | 4523 |
| PspFI | CCCAGC | 1 cut(s) | 56 |
| PspPPI | RGGWCCY | 3 cut(s) | 1545, 2510, 4310 |
| PspXI | VCTCGAGB | 1 cut(s) | 365 |
| PstI | CTGCAG | 3 cut(s) | 229, 1801, 4147 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1913, 2422, 3599, 3743, 4541 |
| PsuI | RGATCY | 7 cut(s) | 820, 866, 1666, 2768, 3083, 3624, 3904 |
| PvuII | CAGCTG | 2 cut(s) | 2422, 4538 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2870, 4173, 4263 |
| SacI | GAGCTC | 1 cut(s) | 3706 |
| SacII | CCGCGG | 1 cut(s) | 3296 |
| SalI | GTCGAC | 1 cut(s) | 625 |
| SapI | GCTCTTC | 2 cut(s) | 2978, 3124 |
| ScaI | AGTACT | 2 cut(s) | 1411, 3240 |
| SchI | GAGTC | 8 cut(s) | 304, 1370, 1655, 2954, 3055, 3266, 4127, 4693 |
| SduI | GDGCHC | 9 cut(s) | 614, 1602, 1618, 1927, 3706, 3883, 3894, 4168, 4600 |
| SfcI | CTRYAG | 5 cut(s) | 225, 646, 1797, 3180, 4143 |
| Sfr274I | CTCGAG | 1 cut(s) | 365 |
| Sfr303I | CCGCGG | 1 cut(s) | 3296 |
| SgrBI | CCGCGG | 1 cut(s) | 3296 |
| SlaI | CTCGAG | 1 cut(s) | 365 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2870, 4173, 4263 |
| SmlI | CTYRAG | 6 cut(s) | 365, 590, 726, 1763, 2662, 4004 |
| SmoI | CTYRAG | 6 cut(s) | 365, 590, 726, 1763, 2662, 4004 |
| SnaBI | TACGTA | 1 cut(s) | 3287 |
| SpeI | ACTAGT | 2 cut(s) | 752, 3863 |
| SphI | GCATGC | 2 cut(s) | 2038, 4471 |
| SsiI | CCGC | 7 cut(s) | 283, 1978, 1988, 2256, 3293, 3295, 4049 |
| SspI | AATATT | 1 cut(s) | 133 |
| SstI | GAGCTC | 1 cut(s) | 3706 |
| StyI | CCWWGG | 4 cut(s) | 875, 1541, 2134, 4395 |
| TaaI | ACNGT | 8 cut(s) | 356, 650, 668, 1840, 2118, 3961, 4103, 4694 |
| TaiI | ACGT | 5 cut(s) | 147, 3013, 3289, 4525, 4639 |
| TaqI | TCGA | 8 cut(s) | 162, 366, 626, 2701, 3334, 3646, 4279, 4444 |
| TatI | WGTACW | 5 cut(s) | 1409, 2466, 3238, 3820, 4489 |
| TauI | GCSGC | 1 cut(s) | 1981 |
| TseFI | GTSAC | 5 cut(s) | 804, 1958, 2435, 3258, 3675 |
| Tsp45I | GTSAC | 5 cut(s) | 804, 1958, 2435, 3258, 3675 |
| TspGWI | ACGGA | 6 cut(s) | 1905, 2090, 2470, 2649, 2761, 3058 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 881, 3695, 3743 |
| Vha464I | CTTAAG | 1 cut(s) | 1763 |
| VneI | GTGCAC | 1 cut(s) | 3879 |
| VspI | ATTAAT | 1 cut(s) | 1934 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1917 |
| XapI | RAATTY | 7 cut(s) | 171, 1536, 2227, 2835, 4058, 4128, 4475 |
| XbaI | TCTAGA | 3 cut(s) | 1669, 2564, 2792 |
| XceI | RCATGY | 3 cut(s) | 2038, 2243, 4471 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2639, 3512 |
| XhoI | CTCGAG | 1 cut(s) | 365 |
| XmiI | GTMKAC | 4 cut(s) | 626, 2775, 3575, 4377 |
| XmnI | GAANNNNTTC | 2 cut(s) | 430, 3934 |
| ZrmI | AGTACT | 2 cut(s) | 1411, 3240 |
| Zsp2I | ATGCAT | 1 cut(s) | 4580 |