CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62900 AT3G62900 AT3G62900 |
| fragaria_vesca | FvH4_2g25070 |
| malus_domestica | MD03G1282000.v1.1 MD11G1301800.v1.1 |
| prunus_persica | Prupe.8G255400_v2.0.a1 |
| pyrus_communis | pycom03g22260 pycom03g22270 pycom03g22280 pycom11g26440 |
| rosa_chinensis | RchiOBHm_Chr6g0293091 |
| rosa_laevigata | RLG00000011972 |
| rosa_multiflora | Rmu_sc0001042.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00174420 |
| rosa_rugosa | Rorug06G0232700 |
| rosa_samantha | Rh6AG345500 Rh6BG353300 Rh6CG359700 Rh6DG345600 |
| rosa_wichuraiana | Rw6G030110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2115 |
| Acc36I | ACCTGC | 1 cut(s) | 1519 |
| AccB1I | GGYRCC | 2 cut(s) | 463, 4508 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 1883, 3791, 4100, 4148, 5026 |
| AccI | GTMKAC | 4 cut(s) | 623, 1342, 4180, 4782 |
| AccII | CGCG | 2 cut(s) | 1064, 5057 |
| AciI | CCGC | 5 cut(s) | 280, 1058, 1978, 2859, 5050 |
| AcuI | CTGAAG | 7 cut(s) | 608, 746, 1434, 1773, 1842, 2613, 4218 |
| AcyI | GRCGYC | 2 cut(s) | 464, 2624 |
| AfaI | GTAC | 9 cut(s) | 527, 1792, 1996, 2465, 3082, 3114, 3264, 4227, 4435 |
| AflII | CTTAAG | 1 cut(s) | 1763 |
| AflIII | ACRYGT | 1 cut(s) | 1062 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1216 |
| AhlI | ACTAGT | 1 cut(s) | 1483 |
| AjiI | CACGTC | 2 cut(s) | 1141, 2377 |
| AjnI | CCWGG | 9 cut(s) | 1235, 1548, 2050, 2164, 2877, 4304, 4350, 4449, 4720 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3086, 3118 |
| AleI | CACNNNNGTG | 1 cut(s) | 1619 |
| Alw21I | GWGCWC | 3 cut(s) | 1616, 4111, 4573 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1913, 4148 |
| Ama87I | CYCGRG | 1 cut(s) | 1576 |
| ApaI | GGGCCC | 2 cut(s) | 1337, 1602 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2267, 2299, 4883, 4915 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2822, 3656 |
| AspLEI | GCGC | 2 cut(s) | 466, 2116 |
| AsuC2I | CCSGG | 1 cut(s) | 2003 |
| AsuII | TTCGAA | 1 cut(s) | 3092 |
| AvaI | CYCGRG | 1 cut(s) | 1576 |
| AvaII | GGWCC | 9 cut(s) | 294, 1210, 1423, 1545, 1892, 2270, 2657, 3271, 3417 |
| AxyI | CCTNAGG | 1 cut(s) | 726 |
| BaeGI | GKGCMC | 5 cut(s) | 1337, 1602, 2157, 4299, 4511 |
| BanI | GGYRCC | 2 cut(s) | 463, 4508 |
| BanII | GRGCYC | 6 cut(s) | 1337, 1602, 1927, 2493, 4111, 5005 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3073, 3105 |
| BbsI | GAAGAC | 2 cut(s) | 666, 3600 |
| Bbv12I | GWGCWC | 3 cut(s) | 1616, 4111, 4573 |
| BceAI | ACGGC | 2 cut(s) | 4716, 5058 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1763, 1797, 1822, 1856 |
| BciT130I | CCWGG | 9 cut(s) | 1237, 1550, 2052, 2166, 2879, 4306, 4352, 4451, 4722 |
| BciVI | GTATCC | 3 cut(s) | 67, 1678, 4051 |
| BclI | TGATCA | 1 cut(s) | 1672 |
| BcnI | CCSGG | 1 cut(s) | 2003 |
| BcuI | ACTAGT | 1 cut(s) | 1483 |
| BfoI | RGCGCY | 1 cut(s) | 467 |
| BfrI | CTTAAG | 1 cut(s) | 1763 |
| BfuAI | ACCTGC | 1 cut(s) | 1519 |
| BfuI | GTATCC | 3 cut(s) | 67, 1678, 4051 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 663 |
| BglII | AGATCT | 3 cut(s) | 863, 1666, 2954 |
| BlpI | GCTNAGC | 2 cut(s) | 2420, 4968 |
| Bme18I | GGWCC | 9 cut(s) | 294, 1210, 1423, 1545, 1892, 2270, 2657, 3271, 3417 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1216 |
| BmeT110I | CYCGRG | 1 cut(s) | 1576 |
| BmgBI | CACGTC | 2 cut(s) | 1141, 2377 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1965 |
| BpiI | GAAGAC | 2 cut(s) | 666, 3600 |
| BpmI | CTGGAG | 3 cut(s) | 270, 4122, 4327 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4887 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2420, 4968 |
| Bpu14I | TTCGAA | 1 cut(s) | 3092 |
| BpuEI | CTTGAG | 5 cut(s) | 383, 2650, 3965, 4394, 4709 |
| BpuMI | CCSGG | 1 cut(s) | 2003 |
| Bsa29I | ATCGAT | 4 cut(s) | 162, 1842, 2761, 3367 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1671, 3459, 4655 |
| BsaHI | GRCGYC | 2 cut(s) | 464, 2624 |
| BsaI | GGTCTC | 2 cut(s) | 288, 1816 |
| BsaJI | CCNNGG | 9 cut(s) | 878, 927, 1236, 1548, 2051, 3785, 4305, 4590, 4800 |
| BsaWI | WCCGGW | 2 cut(s) | 781, 3066 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 3896, 3926 |
| Bse21I | CCTNAGG | 1 cut(s) | 726 |
| Bse3DI | GCAATG | 4 cut(s) | 2189, 2390, 4171, 4911 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1671, 3459, 4655 |
| BseBI | CCWGG | 9 cut(s) | 1237, 1550, 2052, 2166, 2879, 4306, 4352, 4451, 4722 |
| BseCI | ATCGAT | 4 cut(s) | 162, 1842, 2761, 3367 |
| BseDI | CCNNGG | 9 cut(s) | 878, 927, 1236, 1548, 2051, 3785, 4305, 4590, 4800 |
| BseJI | GATNNNNATC | 3 cut(s) | 1671, 3459, 4655 |
| BseMI | GCAATG | 4 cut(s) | 2189, 2390, 4171, 4911 |
| BseRI | GAGGAG | 5 cut(s) | 522, 1091, 2093, 2918, 4119 |
| BseSI | GKGCMC | 5 cut(s) | 1337, 1602, 2157, 4299, 4511 |
| BseYI | CCCAGC | 1 cut(s) | 888 |
| BsgI | GTGCAG | 1 cut(s) | 1914 |
| Bsh1236I | CGCG | 2 cut(s) | 1064, 5057 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3674 |
| BshNI | GGYRCC | 2 cut(s) | 463, 4508 |
| BshVI | ATCGAT | 4 cut(s) | 162, 1842, 2761, 3367 |
| BsiEI | CGRYCG | 1 cut(s) | 3674 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1616, 4111, 4573 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1576 |
| BsiSI | CCGG | 3 cut(s) | 782, 2003, 3067 |
| BsmBI | CGTCTC | 4 cut(s) | 3507, 3774, 4412, 4956 |
| BsmI | GAATGC | 2 cut(s) | 3988, 4936 |
| Bso31I | GGTCTC | 2 cut(s) | 288, 1816 |
| BsoBI | CYCGRG | 1 cut(s) | 1576 |
| Bsp119I | TTCGAA | 1 cut(s) | 3092 |
| Bsp120I | GGGCCC | 2 cut(s) | 1333, 1598 |
| Bsp1407I | TGTACA | 1 cut(s) | 3112 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2420, 4968 |
| Bsp19I | CCATGG | 1 cut(s) | 927 |
| Bsp68I | TCGCGA | 1 cut(s) | 5057 |
| BspACI | CCGC | 5 cut(s) | 280, 1058, 1978, 2859, 5050 |
| BspDI | ATCGAT | 4 cut(s) | 162, 1842, 2761, 3367 |
| BspFNI | CGCG | 2 cut(s) | 1064, 5057 |
| BspHI | TCATGA | 3 cut(s) | 718, 2520, 4573 |
| BspMAI | CTGCAG | 6 cut(s) | 226, 1516, 1801, 1909, 1921, 2692 |
| BspMI | ACCTGC | 1 cut(s) | 1519 |
| BspQI | GCTCTTC | 2 cut(s) | 1604, 3148 |
| BspT104I | TTCGAA | 1 cut(s) | 3092 |
| BspT107I | GGYRCC | 2 cut(s) | 463, 4508 |
| BspTI | CTTAAG | 1 cut(s) | 1763 |
| BspTNI | GGTCTC | 2 cut(s) | 288, 1816 |
| BsrDI | GCAATG | 4 cut(s) | 2189, 2390, 4171, 4911 |
| BsrGI | TGTACA | 1 cut(s) | 3112 |
| BssECI | CCNNGG | 9 cut(s) | 878, 927, 1236, 1548, 2051, 3785, 4305, 4590, 4800 |
| BssNAI | GTATAC | 1 cut(s) | 4181 |
| BssNI | GRCGYC | 2 cut(s) | 464, 2624 |
| BssT1I | CCWWGG | 5 cut(s) | 878, 927, 3785, 4590, 4800 |
| Bst1107I | GTATAC | 1 cut(s) | 4181 |
| Bst2UI | CCWGG | 9 cut(s) | 1237, 1550, 2052, 2166, 2879, 4306, 4352, 4451, 4722 |
| Bst6I | CTCTTC | 9 cut(s) | 813, 879, 1597, 1604, 2351, 2539, 3148, 3667, 4993 |
| BstACI | GRCGYC | 2 cut(s) | 464, 2624 |
| BstAFI | CTTAAG | 1 cut(s) | 1763 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1913, 2245, 3299, 3994 |
| BstAUI | TGTACA | 1 cut(s) | 3112 |
| BstBI | TTCGAA | 1 cut(s) | 3092 |
| BstC8I | GCNNGC | 7 cut(s) | 426, 2036, 2241, 2980, 4665, 4675, 5055 |
| BstDSI | CCRYGG | 1 cut(s) | 927 |
| BstEII | GGTNACC | 1 cut(s) | 4789 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 854, 1917 |
| BstFNI | CGCG | 2 cut(s) | 1064, 5057 |
| BstH2I | RGCGCY | 1 cut(s) | 467 |
| BstHHI | GCGC | 2 cut(s) | 466, 2116 |
| BstMCI | CGRYCG | 1 cut(s) | 3674 |
| BstNI | CCWGG | 9 cut(s) | 1237, 1550, 2052, 2166, 2879, 4306, 4352, 4451, 4722 |
| BstNSI | RCATGY | 4 cut(s) | 505, 2038, 2243, 4667 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1965 |
| BstPI | GGTNACC | 1 cut(s) | 4789 |
| BstSLI | GKGCMC | 5 cut(s) | 1337, 1602, 2157, 4299, 4511 |
| BstUI | CGCG | 2 cut(s) | 1064, 5057 |
| BstV2I | GAAGAC | 2 cut(s) | 666, 3600 |
| BstX2I | RGATCY | 5 cut(s) | 863, 1666, 2954, 3107, 4309 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 914, 2437, 3620, 4597, 4826 |
| BstYI | RGATCY | 5 cut(s) | 863, 1666, 2954, 3107, 4309 |
| BstZ17I | GTATAC | 1 cut(s) | 4181 |
| Bsu15I | ATCGAT | 4 cut(s) | 162, 1842, 2761, 3367 |
| Bsu36I | CCTNAGG | 1 cut(s) | 726 |
| BsuI | GTATCC | 3 cut(s) | 67, 1678, 4051 |
| BsuTUI | ATCGAT | 4 cut(s) | 162, 1842, 2761, 3367 |
| BtgI | CCRYGG | 1 cut(s) | 927 |
| BtgZI | GCGATG | 2 cut(s) | 1317, 5072 |
| BtrI | CACGTC | 2 cut(s) | 1141, 2377 |
| BtsI | GCAGTG | 3 cut(s) | 2123, 2448, 4545 |
| BtuMI | TCGCGA | 1 cut(s) | 5057 |
| BveI | ACCTGC | 1 cut(s) | 1519 |
| Cac8I | GCNNGC | 7 cut(s) | 426, 2036, 2241, 2980, 4665, 4675, 5055 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1913, 4148 |
| CciI | TCATGA | 3 cut(s) | 718, 2520, 4573 |
| CfoI | GCGC | 2 cut(s) | 466, 2116 |
| ClaI | ATCGAT | 4 cut(s) | 162, 1842, 2761, 3367 |
| CseI | GACGC | 3 cut(s) | 1070, 2613, 4973 |
| Csp6I | GTAC | 9 cut(s) | 526, 1791, 1995, 2464, 3081, 3113, 3263, 4226, 4434 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 430, 465, 2971, 3006 |
| CviQI | GTAC | 9 cut(s) | 526, 1791, 1995, 2464, 3081, 3113, 3263, 4226, 4434 |
| DinI | GGCGCC | 1 cut(s) | 465 |
| DraI | TTTAAA | 3 cut(s) | 1407, 2529, 4389 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1216 |
| Eam1104I | CTCTTC | 9 cut(s) | 813, 879, 1597, 1604, 2351, 2539, 3148, 3667, 4993 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1216 |
| EarI | CTCTTC | 9 cut(s) | 813, 879, 1597, 1604, 2351, 2539, 3148, 3667, 4993 |
| Ecl136II | GAGCTC | 1 cut(s) | 4109 |
| Eco130I | CCWWGG | 5 cut(s) | 878, 927, 3785, 4590, 4800 |
| Eco147I | AGGCCT | 1 cut(s) | 4018 |
| Eco24I | GRGCYC | 6 cut(s) | 1337, 1602, 1927, 2493, 4111, 5005 |
| Eco31I | GGTCTC | 2 cut(s) | 288, 1816 |
| Eco32I | GATATC | 2 cut(s) | 2518, 3511 |
| Eco47I | GGWCC | 9 cut(s) | 294, 1210, 1423, 1545, 1892, 2270, 2657, 3271, 3417 |
| Eco53kI | GAGCTC | 1 cut(s) | 4109 |
| Eco57I | CTGAAG | 7 cut(s) | 608, 746, 1434, 1773, 1842, 2613, 4218 |
| Eco81I | CCTNAGG | 1 cut(s) | 726 |
| Eco88I | CYCGRG | 1 cut(s) | 1576 |
| Eco91I | GGTNACC | 1 cut(s) | 4789 |
| EcoICRI | GAGCTC | 1 cut(s) | 4109 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 854, 1917 |
| EcoO109I | RGGNCCY | 7 cut(s) | 1333, 1334, 1545, 1598, 2657, 3271, 3417 |
| EcoO65I | GGTNACC | 1 cut(s) | 4789 |
| EcoRI | GAATTC | 2 cut(s) | 2822, 3730 |
| EcoRII | CCWGG | 9 cut(s) | 1235, 1548, 2050, 2164, 2877, 4304, 4350, 4449, 4720 |
| EcoRV | GATATC | 2 cut(s) | 2518, 3511 |
| EcoT14I | CCWWGG | 5 cut(s) | 878, 927, 3785, 4590, 4800 |
| EcoT22I | ATGCAT | 1 cut(s) | 2293 |
| EcoT38I | GRGCYC | 6 cut(s) | 1337, 1602, 1927, 2493, 4111, 5005 |
| EgeI | GGCGCC | 1 cut(s) | 465 |
| EheI | GGCGCC | 1 cut(s) | 465 |
| ErhI | CCWWGG | 5 cut(s) | 878, 927, 3785, 4590, 4800 |
| Esp3I | CGTCTC | 4 cut(s) | 3507, 3774, 4412, 4956 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1746, 1778, 4778, 4810 |
| FauI | CCCGC | 1 cut(s) | 2866 |
| FauNDI | CATATG | 1 cut(s) | 2844 |
| FbaI | TGATCA | 1 cut(s) | 1672 |
| FblI | GTMKAC | 4 cut(s) | 623, 1342, 4180, 4782 |
| FriOI | GRGCYC | 6 cut(s) | 1337, 1602, 1927, 2493, 4111, 5005 |
| FspI | TGCGCA | 1 cut(s) | 2115 |
| GlaI | GCGC | 2 cut(s) | 465, 2115 |
| GsaI | CCCAGC | 1 cut(s) | 892 |
| GsuI | CTGGAG | 3 cut(s) | 270, 4122, 4327 |
| HaeII | RGCGCY | 1 cut(s) | 467 |
| HapII | CCGG | 3 cut(s) | 782, 2003, 3067 |
| HgaI | GACGC | 3 cut(s) | 1070, 2613, 4973 |
| HhaI | GCGC | 2 cut(s) | 466, 2116 |
| Hin1I | GRCGYC | 2 cut(s) | 464, 2624 |
| Hin6I | GCGC | 2 cut(s) | 464, 2114 |
| HinP1I | GCGC | 2 cut(s) | 464, 2114 |
| HincII | GTYRAC | 3 cut(s) | 374, 624, 1804 |
| HindII | GTYRAC | 3 cut(s) | 374, 624, 1804 |
| HindIII | AAGCTT | 5 cut(s) | 96, 1401, 1760, 2365, 3251 |
| HpaI | GTTAAC | 1 cut(s) | 1804 |
| HpaII | CCGG | 3 cut(s) | 782, 2003, 3067 |
| HpyCH4IV | ACGT | 7 cut(s) | 354, 376, 1140, 2376, 4893, 4956, 5041 |
| HpySE526I | ACGT | 7 cut(s) | 354, 376, 1140, 2376, 4893, 4956, 5041 |
| Hsp92I | GRCGYC | 2 cut(s) | 464, 2624 |
| HspAI | GCGC | 2 cut(s) | 464, 2114 |
| KasI | GGCGCC | 1 cut(s) | 463 |
| KflI | GGGWCCC | 1 cut(s) | 3417 |
| Ksp22I | TGATCA | 1 cut(s) | 1672 |
| KspAI | GTTAAC | 1 cut(s) | 1804 |
| LguI | GCTCTTC | 2 cut(s) | 1604, 3148 |
| MaeII | ACGT | 7 cut(s) | 354, 376, 1140, 2376, 4893, 4956, 5041 |
| MflI | RGATCY | 5 cut(s) | 863, 1666, 2954, 3107, 4309 |
| MluI | ACGCGT | 1 cut(s) | 1062 |
| Mly113I | GGCGCC | 1 cut(s) | 464 |
| MlyI | GAGTC | 9 cut(s) | 301, 865, 1763, 2543, 2978, 3710, 3916, 4120, 4334 |
| MmeI | TCCRAC | 2 cut(s) | 1245, 4467 |
| Mph1103I | ATGCAT | 1 cut(s) | 2293 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2822, 3656 |
| MslI | CAYNNNNRTG | 6 cut(s) | 114, 1619, 2441, 3618, 3624, 4668 |
| MspA1I | CMGCKG | 3 cut(s) | 280, 4457, 4943 |
| MspCI | CTTAAG | 1 cut(s) | 1763 |
| MspI | CCGG | 3 cut(s) | 782, 2003, 3067 |
| Mva1269I | GAATGC | 2 cut(s) | 3988, 4936 |
| MvaI | CCWGG | 9 cut(s) | 1237, 1550, 2052, 2166, 2879, 4306, 4352, 4451, 4722 |
| MvnI | CGCG | 2 cut(s) | 1064, 5057 |
| NarI | GGCGCC | 1 cut(s) | 464 |
| NciI | CCSGG | 1 cut(s) | 2003 |
| NcoI | CCATGG | 1 cut(s) | 927 |
| NdeI | CATATG | 1 cut(s) | 2844 |
| NmuCI | GTSAC | 7 cut(s) | 801, 868, 1373, 1538, 1958, 2432, 4080 |
| NruI | TCGCGA | 1 cut(s) | 5057 |
| NsbI | TGCGCA | 1 cut(s) | 2115 |
| NsiI | ATGCAT | 1 cut(s) | 2293 |
| NspI | RCATGY | 4 cut(s) | 505, 2038, 2243, 4667 |
| NspV | TTCGAA | 1 cut(s) | 3092 |
| OliI | CACNNNNGTG | 1 cut(s) | 1619 |
| PaeI | GCATGC | 3 cut(s) | 2038, 2243, 4667 |
| PaeR7I | CTCGAG | 1 cut(s) | 1576 |
| PagI | TCATGA | 3 cut(s) | 718, 2520, 4573 |
| PceI | AGGCCT | 1 cut(s) | 4018 |
| PciSI | GCTCTTC | 2 cut(s) | 1604, 3148 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3089, 4135 |
| PctI | GAATGC | 2 cut(s) | 3988, 4936 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2822, 3656 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 1883, 3791, 4100, 4148, 5026 |
| PfoI | TCCNGGA | 1 cut(s) | 2877 |
| PleI | GAGTC | 9 cut(s) | 301, 865, 1763, 2543, 2977, 3709, 3915, 4120, 4334 |
| PluTI | GGCGCC | 1 cut(s) | 467 |
| PpsI | GAGTC | 9 cut(s) | 301, 865, 1763, 2543, 2977, 3709, 3915, 4120, 4334 |
| PpuMI | RGGWCCY | 4 cut(s) | 1545, 2657, 3271, 3417 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1965 |
| Psp124BI | GAGCTC | 1 cut(s) | 4111 |
| Psp5II | RGGWCCY | 4 cut(s) | 1545, 2657, 3271, 3417 |
| Psp6I | CCWGG | 9 cut(s) | 1235, 1548, 2050, 2164, 2877, 4304, 4350, 4449, 4720 |
| PspEI | GGTNACC | 1 cut(s) | 4789 |
| PspFI | CCCAGC | 1 cut(s) | 888 |
| PspGI | CCWGG | 9 cut(s) | 1235, 1548, 2050, 2164, 2877, 4304, 4350, 4449, 4720 |
| PspOMI | GGGCCC | 2 cut(s) | 1333, 1598 |
| PspPPI | RGGWCCY | 4 cut(s) | 1545, 2657, 3271, 3417 |
| PspXI | VCTCGAGB | 1 cut(s) | 1576 |
| PstI | CTGCAG | 6 cut(s) | 226, 1516, 1801, 1909, 1921, 2692 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1913, 4148 |
| PsuI | RGATCY | 5 cut(s) | 863, 1666, 2954, 3107, 4309 |
| PvuII | CAGCTG | 2 cut(s) | 4457, 4943 |
| RruI | TCGCGA | 1 cut(s) | 5057 |
| RsaI | GTAC | 9 cut(s) | 527, 1792, 1996, 2465, 3082, 3114, 3264, 4227, 4435 |
| RsaNI | GTAC | 9 cut(s) | 526, 1791, 1995, 2464, 3081, 3113, 3263, 4226, 4434 |
| RseI | CAYNNNNRTG | 6 cut(s) | 114, 1619, 2441, 3618, 3624, 4668 |
| SacI | GAGCTC | 1 cut(s) | 4111 |
| SalI | GTCGAC | 1 cut(s) | 622 |
| SapI | GCTCTTC | 2 cut(s) | 1604, 3148 |
| SchI | GAGTC | 9 cut(s) | 301, 865, 1763, 2543, 2978, 3710, 3916, 4120, 4334 |
| SfoI | GGCGCC | 1 cut(s) | 465 |
| Sfr274I | CTCGAG | 1 cut(s) | 1576 |
| SfuI | TTCGAA | 1 cut(s) | 3092 |
| SinI | GGWCC | 9 cut(s) | 294, 1210, 1423, 1545, 1892, 2270, 2657, 3271, 3417 |
| SlaI | CTCGAG | 1 cut(s) | 1576 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 114, 1619, 2441, 3618, 3624, 4668 |
| SmlI | CTYRAG | 7 cut(s) | 362, 1576, 1763, 2665, 3980, 4409, 4688 |
| SmoI | CTYRAG | 7 cut(s) | 362, 1576, 1763, 2665, 3980, 4409, 4688 |
| SpeI | ACTAGT | 1 cut(s) | 1483 |
| SphI | GCATGC | 3 cut(s) | 2038, 2243, 4667 |
| SseBI | AGGCCT | 1 cut(s) | 4018 |
| SsiI | CCGC | 5 cut(s) | 280, 1058, 1978, 2859, 5050 |
| SspDI | GGCGCC | 1 cut(s) | 463 |
| SspI | AATATT | 1 cut(s) | 1172 |
| SstI | GAGCTC | 1 cut(s) | 4111 |
| StuI | AGGCCT | 1 cut(s) | 4018 |
| StyI | CCWWGG | 5 cut(s) | 878, 927, 3785, 4590, 4800 |
| TaiI | ACGT | 7 cut(s) | 357, 379, 1143, 2379, 4896, 4959, 5044 |
| TatI | WGTACW | 5 cut(s) | 1790, 2463, 3112, 3262, 4225 |
| TauI | GCSGC | 2 cut(s) | 1981, 5053 |
| TseFI | GTSAC | 7 cut(s) | 801, 868, 1373, 1538, 1958, 2432, 4080 |
| Tsp45I | GTSAC | 7 cut(s) | 801, 868, 1373, 1538, 1958, 2432, 4080 |
| TspGWI | ACGGA | 4 cut(s) | 2299, 3098, 3789, 4942 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 1883, 3791, 4100, 4148, 5026 |
| Vha464I | CTTAAG | 1 cut(s) | 1763 |
| VpaK11BI | GGWCC | 9 cut(s) | 294, 1210, 1423, 1545, 1892, 2270, 2657, 3271, 3417 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 854, 1917 |
| XbaI | TCTAGA | 2 cut(s) | 2567, 2951 |
| XceI | RCATGY | 4 cut(s) | 505, 2038, 2243, 4667 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 885 |
| XhoI | CTCGAG | 1 cut(s) | 1576 |
| XmiI | GTMKAC | 4 cut(s) | 623, 1342, 4180, 4782 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2822, 3656 |
| Zsp2I | ATGCAT | 1 cut(s) | 2293 |