CW-type Zinc Finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G62900 AT3G62900 AT3G62900 |
| fragaria_vesca | FvH4_2g25070 |
| malus_domestica | MD03G1282000.v1.1 MD11G1301800.v1.1 |
| prunus_persica | Prupe.8G255400_v2.0.a1 |
| pyrus_communis | pycom03g22260 pycom03g22270 pycom03g22280 pycom11g26440 |
| rosa_chinensis | RchiOBHm_Chr6g0293091 |
| rosa_laevigata | RLG00000011972 |
| rosa_multiflora | Rmu_sc0001042.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00174420 |
| rosa_rugosa | Rorug06G0232700 |
| rosa_samantha | Rh6AG345500 Rh6BG353300 Rh6CG359700 Rh6DG345600 |
| rosa_wichuraiana | Rw6G030110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1624 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 47, 2243 |
| AccIII | TCCGGA | 1 cut(s) | 2180 |
| AciI | CCGC | 2 cut(s) | 142, 1066 |
| AclWI | GGATC | 3 cut(s) | 912, 1032, 1792 |
| AcsI | RAATTY | 5 cut(s) | 388, 682, 1882, 2056, 2134 |
| AcuI | CTGAAG | 3 cut(s) | 771, 2361, 2378 |
| AfaI | GTAC | 5 cut(s) | 160, 284, 629, 1257, 1407 |
| AgsI | TTSAA | 8 cut(s) | 30, 386, 535, 1237, 1281, 1384, 1853, 2415 |
| AjnI | CCWGG | 6 cut(s) | 214, 328, 400, 1587, 2444, 2490 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1229, 1261, 1667, 1699 |
| Alw21I | GWGCWC | 2 cut(s) | 2254, 2509 |
| Alw26I | GTCTC | 5 cut(s) | 555, 699, 1363, 1566, 2255 |
| AlwI | GGATC | 3 cut(s) | 912, 1032, 1792 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1037 |
| Ama87I | CYCGRG | 2 cut(s) | 726, 1937 |
| Aor13HI | TCCGGA | 1 cut(s) | 2180 |
| AoxI | GGCC | 5 cut(s) | 56, 71, 1875, 2074, 2442 |
| ApaI | GGGCCC | 1 cut(s) | 60 |
| ApoI | RAATTY | 5 cut(s) | 388, 682, 1882, 2056, 2134 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1432, 1464 |
| AseI | ATTAAT | 1 cut(s) | 765 |
| AspS9I | GGNCC | 7 cut(s) | 56, 57, 71, 815, 1414, 2075, 2442 |
| AsuC2I | CCSGG | 3 cut(s) | 167, 1938, 1939 |
| AsuHPI | GGTGA | 8 cut(s) | 683, 1199, 1335, 1359, 1781, 1883, 1908, 2168 |
| AvaI | CYCGRG | 2 cut(s) | 726, 1937 |
| AvaII | GGWCC | 2 cut(s) | 815, 1414 |
| BaeGI | GKGCMC | 2 cut(s) | 60, 2439 |
| BanII | GRGCYC | 4 cut(s) | 60, 91, 657, 2254 |
| BbsI | GAAGAC | 1 cut(s) | 1563 |
| Bbv12I | GWGCWC | 2 cut(s) | 2254, 2509 |
| BccI | CCATC | 8 cut(s) | 461, 771, 1478, 1490, 1651, 1937, 2066, 2147 |
| BceAI | ACGGC | 1 cut(s) | 39 |
| BciT130I | CCWGG | 6 cut(s) | 216, 330, 402, 1589, 2446, 2492 |
| BciVI | GTATCC | 1 cut(s) | 1805 |
| BcnI | CCSGG | 3 cut(s) | 167, 1938, 1939 |
| BcoDI | GTCTC | 5 cut(s) | 555, 699, 1363, 1566, 2255 |
| BfaI | CTAG | 4 cut(s) | 411, 819, 1116, 2463 |
| BfmI | CTRYAG | 4 cut(s) | 81, 834, 1005, 1347 |
| BfuAI | ACCTGC | 1 cut(s) | 1624 |
| BfuI | GTATCC | 1 cut(s) | 1805 |
| BlpI | GCTNAGC | 1 cut(s) | 584 |
| Bme1390I | CCNGG | 9 cut(s) | 167, 216, 330, 402, 1589, 1938, 1939, 2446, 2492 |
| Bme18I | GGWCC | 2 cut(s) | 815, 1414 |
| BmeT110I | CYCGRG | 2 cut(s) | 726, 1937 |
| BmgT120I | GGNCC | 7 cut(s) | 56, 57, 71, 815, 1414, 2075, 2442 |
| BmiI | GGNNCC | 7 cut(s) | 58, 90, 472, 994, 1263, 1303, 1415 |
| BmrFI | CCNGG | 9 cut(s) | 167, 216, 330, 402, 1589, 1938, 1939, 2446, 2492 |
| BmrI | ACTGGG | 3 cut(s) | 672, 1716, 2022 |
| BmsI | GCATC | 8 cut(s) | 521, 1466, 2101, 2191, 2323, 2341, 2428, 2446 |
| BmuI | ACTGGG | 3 cut(s) | 672, 1716, 2022 |
| BoxI | GACNNNNGTC | 1 cut(s) | 129 |
| BpiI | GAAGAC | 1 cut(s) | 1563 |
| Bpu10I | CCTNAGC | 1 cut(s) | 357 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 584 |
| BpuEI | CTTGAG | 1 cut(s) | 808 |
| BpuMI | CCSGG | 3 cut(s) | 167, 1938, 1939 |
| Bsa29I | ATCGAT | 2 cut(s) | 1510, 2527 |
| BsaBI | GATNNNNATC | 3 cut(s) | 543, 781, 1602 |
| BsaI | GGTCTC | 2 cut(s) | 1566, 2255 |
| BsaJI | CCNNGG | 5 cut(s) | 215, 1924, 1937, 1938, 2445 |
| BsaWI | WCCGGW | 2 cut(s) | 1209, 2180 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 73, 103 |
| Bse1I | ACTGG | 6 cut(s) | 594, 667, 1320, 1711, 2017, 2468 |
| Bse3DI | GCAATG | 1 cut(s) | 350 |
| Bse8I | GATNNNNATC | 3 cut(s) | 543, 781, 1602 |
| BseAI | TCCGGA | 1 cut(s) | 2180 |
| BseBI | CCWGG | 6 cut(s) | 216, 330, 402, 1589, 2446, 2492 |
| BseCI | ATCGAT | 2 cut(s) | 1510, 2527 |
| BseDI | CCNNGG | 5 cut(s) | 215, 1924, 1937, 1938, 2445 |
| BseGI | GGATG | 7 cut(s) | 13, 225, 782, 901, 1435, 1948, 2206 |
| BseJI | GATNNNNATC | 3 cut(s) | 543, 781, 1602 |
| BseMI | GCAATG | 1 cut(s) | 350 |
| BseMII | CTCAG | 5 cut(s) | 291, 1494, 1909, 1971, 2414 |
| BseNI | ACTGG | 6 cut(s) | 594, 667, 1320, 1711, 2017, 2468 |
| BseRI | GAGGAG | 3 cut(s) | 257, 1061, 1276 |
| BseSI | GKGCMC | 2 cut(s) | 60, 2439 |
| BseYI | CCCAGC | 1 cut(s) | 68 |
| BsgI | GTGCAG | 1 cut(s) | 78 |
| BshFI | GGCC | 5 cut(s) | 58, 73, 1877, 2076, 2444 |
| BshVI | ATCGAT | 2 cut(s) | 1510, 2527 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2254, 2509 |
| BsiHKCI | CYCGRG | 2 cut(s) | 726, 1937 |
| BsiSI | CCGG | 5 cut(s) | 167, 1210, 1938, 2181, 2484 |
| BslFI | GGGAC | 3 cut(s) | 1427, 2262, 2492 |
| BsmAI | GTCTC | 5 cut(s) | 555, 699, 1363, 1566, 2255 |
| BsmBI | CGTCTC | 1 cut(s) | 1363 |
| BsmFI | GGGAC | 3 cut(s) | 1427, 2262, 2492 |
| BsnI | GGCC | 5 cut(s) | 58, 73, 1877, 2076, 2444 |
| Bso31I | GGTCTC | 2 cut(s) | 1566, 2255 |
| BsoBI | CYCGRG | 2 cut(s) | 726, 1937 |
| Bsp120I | GGGCCC | 1 cut(s) | 56 |
| Bsp1286I | GDGCHC | 6 cut(s) | 60, 91, 657, 2254, 2439, 2509 |
| Bsp13I | TCCGGA | 1 cut(s) | 2180 |
| Bsp1407I | TGTACA | 1 cut(s) | 1255 |
| Bsp143I | GATC | 9 cut(s) | 847, 917, 953, 1024, 1507, 1511, 1784, 1909, 2524 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 584 |
| Bsp19I | CCATGG | 1 cut(s) | 1924 |
| BspACI | CCGC | 2 cut(s) | 142, 1066 |
| BspANI | GGCC | 5 cut(s) | 58, 73, 1877, 2076, 2444 |
| BspCNI | CTCAG | 5 cut(s) | 292, 1493, 1908, 1972, 2413 |
| BspDI | ATCGAT | 2 cut(s) | 1510, 2527 |
| BspEI | TCCGGA | 1 cut(s) | 2180 |
| BspHI | TCATGA | 1 cut(s) | 1564 |
| BspLI | GGNNCC | 7 cut(s) | 58, 90, 472, 994, 1263, 1303, 1415 |
| BspMAI | CTGCAG | 1 cut(s) | 838 |
| BspMI | ACCTGC | 1 cut(s) | 1624 |
| BspPI | GGATC | 3 cut(s) | 912, 1032, 1792 |
| BspTNI | GGTCTC | 2 cut(s) | 1566, 2255 |
| BsrDI | GCAATG | 1 cut(s) | 350 |
| BsrGI | TGTACA | 1 cut(s) | 1255 |
| BsrI | ACTGG | 6 cut(s) | 594, 667, 1320, 1711, 2017, 2468 |
| BssECI | CCNNGG | 5 cut(s) | 215, 1924, 1937, 1938, 2445 |
| BssMI | GATC | 9 cut(s) | 847, 917, 953, 1024, 1507, 1511, 1784, 1909, 2524 |
| BssT1I | CCWWGG | 1 cut(s) | 1924 |
| Bst2UI | CCWGG | 6 cut(s) | 216, 330, 402, 1589, 2446, 2492 |
| Bst4CI | ACNGT | 4 cut(s) | 282, 938, 1039, 1546 |
| Bst6I | CTCTTC | 3 cut(s) | 515, 697, 1822 |
| BstAUI | TGTACA | 1 cut(s) | 1255 |
| BstC8I | GCNNGC | 4 cut(s) | 200, 407, 510, 1123 |
| BstDEI | CTNAG | 8 cut(s) | 300, 357, 584, 922, 1480, 1895, 1980, 2400 |
| BstDSI | CCRYGG | 1 cut(s) | 1924 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 81 |
| BstF5I | GGATG | 7 cut(s) | 13, 225, 782, 901, 1435, 1948, 2206 |
| BstKTI | GATC | 9 cut(s) | 850, 920, 956, 1027, 1510, 1514, 1787, 1912, 2527 |
| BstMAI | GTCTC | 5 cut(s) | 555, 699, 1363, 1566, 2255 |
| BstMBI | GATC | 9 cut(s) | 847, 917, 953, 1024, 1507, 1511, 1784, 1909, 2524 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 86, 208, 275, 406, 1485, 2137 |
| BstNI | CCWGG | 6 cut(s) | 216, 330, 402, 1589, 2446, 2492 |
| BstNSI | RCATGY | 3 cut(s) | 202, 409, 872 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 129 |
| BstSCI | CCNGG | 9 cut(s) | 165, 214, 328, 400, 1587, 1936, 1937, 2444, 2490 |
| BstSFI | CTRYAG | 4 cut(s) | 81, 834, 1005, 1347 |
| BstSLI | GKGCMC | 2 cut(s) | 60, 2439 |
| BstV2I | GAAGAC | 1 cut(s) | 1563 |
| BstX2I | RGATCY | 1 cut(s) | 1784 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 601 |
| BstYI | RGATCY | 1 cut(s) | 1784 |
| Bsu15I | ATCGAT | 2 cut(s) | 1510, 2527 |
| BsuI | GTATCC | 1 cut(s) | 1805 |
| BsuRI | GGCC | 5 cut(s) | 58, 73, 1877, 2076, 2444 |
| BsuTUI | ATCGAT | 2 cut(s) | 1510, 2527 |
| BtgI | CCRYGG | 1 cut(s) | 1924 |
| BtgZI | GCGATG | 1 cut(s) | 1629 |
| BtsCI | GGATG | 7 cut(s) | 13, 225, 782, 901, 1435, 1948, 2206 |
| BtsI | GCAGTG | 2 cut(s) | 554, 612 |
| BtsIMutI | CAGTG | 7 cut(s) | 95, 522, 554, 601, 612, 1542, 1903 |
| BveI | ACCTGC | 1 cut(s) | 1624 |
| Cac8I | GCNNGC | 4 cut(s) | 200, 407, 510, 1123 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1037 |
| CciI | TCATGA | 1 cut(s) | 1564 |
| Cfr13I | GGNCC | 7 cut(s) | 56, 57, 71, 815, 1414, 2075, 2442 |
| Cfr9I | CCCGGG | 1 cut(s) | 1937 |
| ClaI | ATCGAT | 2 cut(s) | 1510, 2527 |
| Csp6I | GTAC | 5 cut(s) | 159, 283, 628, 1256, 1406 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1114, 1149 |
| CviQI | GTAC | 5 cut(s) | 159, 283, 628, 1256, 1406 |
| DdeI | CTNAG | 8 cut(s) | 300, 357, 584, 922, 1480, 1895, 1980, 2400 |
| DpnI | GATC | 9 cut(s) | 849, 919, 955, 1026, 1509, 1513, 1786, 1911, 2526 |
| DpnII | GATC | 9 cut(s) | 847, 917, 953, 1024, 1507, 1511, 1784, 1909, 2524 |
| DraI | TTTAAA | 1 cut(s) | 687 |
| Eam1104I | CTCTTC | 3 cut(s) | 515, 697, 1822 |
| EarI | CTCTTC | 3 cut(s) | 515, 697, 1822 |
| Ecl136II | GAGCTC | 1 cut(s) | 2252 |
| Eco130I | CCWWGG | 1 cut(s) | 1924 |
| Eco24I | GRGCYC | 4 cut(s) | 60, 91, 657, 2254 |
| Eco31I | GGTCTC | 2 cut(s) | 1566, 2255 |
| Eco32I | GATATC | 1 cut(s) | 1654 |
| Eco47I | GGWCC | 2 cut(s) | 815, 1414 |
| Eco53kI | GAGCTC | 1 cut(s) | 2252 |
| Eco57I | CTGAAG | 3 cut(s) | 771, 2361, 2378 |
| Eco88I | CYCGRG | 2 cut(s) | 726, 1937 |
| EcoICRI | GAGCTC | 1 cut(s) | 2252 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 81 |
| EcoO109I | RGGNCCY | 2 cut(s) | 815, 1414 |
| EcoRI | GAATTC | 2 cut(s) | 1882, 2134 |
| EcoRII | CCWGG | 6 cut(s) | 214, 328, 400, 1587, 2444, 2490 |
| EcoRV | GATATC | 1 cut(s) | 1654 |
| EcoT14I | CCWWGG | 1 cut(s) | 1924 |
| EcoT38I | GRGCYC | 4 cut(s) | 60, 91, 657, 2254 |
| ErhI | CCWWGG | 1 cut(s) | 1924 |
| Esp3I | CGTCTC | 1 cut(s) | 1363 |
| FaqI | GGGAC | 3 cut(s) | 1427, 2262, 2492 |
| FauNDI | CATATG | 1 cut(s) | 154 |
| FokI | GGATG | 6 cut(s) | 232, 789, 908, 1442, 1955, 2213 |
| FriOI | GRGCYC | 4 cut(s) | 60, 91, 657, 2254 |
| FspBI | CTAG | 4 cut(s) | 411, 819, 1116, 2463 |
| GsaI | CCCAGC | 1 cut(s) | 72 |
| HaeIII | GGCC | 5 cut(s) | 58, 73, 1877, 2076, 2444 |
| HapII | CCGG | 5 cut(s) | 167, 1210, 1938, 2181, 2484 |
| HindIII | AAGCTT | 3 cut(s) | 529, 900, 1394 |
| HpaII | CCGG | 5 cut(s) | 167, 1210, 1938, 2181, 2484 |
| HphI | GGTGA | 8 cut(s) | 683, 1199, 1335, 1359, 1781, 1883, 1908, 2168 |
| Hpy166II | GTNNAC | 4 cut(s) | 238, 566, 1343, 1901 |
| Hpy8I | GTNNAC | 4 cut(s) | 238, 566, 1343, 1901 |
| HpyCH4III | ACNGT | 4 cut(s) | 282, 938, 1039, 1546 |
| HpyCH4IV | ACGT | 1 cut(s) | 43 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 86, 208, 275, 406, 1485, 2137 |
| HpyF3I | CTNAG | 8 cut(s) | 300, 357, 584, 922, 1480, 1895, 1980, 2400 |
| HpySE526I | ACGT | 1 cut(s) | 43 |
| Kpn2I | TCCGGA | 1 cut(s) | 2180 |
| Kzo9I | GATC | 9 cut(s) | 847, 917, 953, 1024, 1507, 1511, 1784, 1909, 2524 |
| LmnI | GCTCC | 6 cut(s) | 94, 434, 1289, 1845, 2249, 2312 |
| LweI | GCATC | 8 cut(s) | 521, 1466, 2101, 2191, 2323, 2341, 2428, 2446 |
| MaeI | CTAG | 4 cut(s) | 411, 819, 1116, 2463 |
| MaeII | ACGT | 1 cut(s) | 43 |
| MaeIII | GTNAC | 9 cut(s) | 122, 596, 671, 864, 1033, 1434, 2008, 2223, 2497 |
| MalI | GATC | 9 cut(s) | 849, 919, 955, 1026, 1509, 1513, 1786, 1911, 2526 |
| MboI | GATC | 9 cut(s) | 847, 917, 953, 1024, 1507, 1511, 1784, 1909, 2524 |
| MfeI | CAATTG | 2 cut(s) | 793, 1721 |
| MflI | RGATCY | 1 cut(s) | 1784 |
| MhlI | GDGCHC | 6 cut(s) | 60, 91, 657, 2254, 2439, 2509 |
| MlyI | GAGTC | 7 cut(s) | 2, 701, 1121, 1442, 1577, 2201, 2474 |
| MroI | TCCGGA | 1 cut(s) | 2180 |
| MslI | CAYNNNNRTG | 3 cut(s) | 605, 765, 1779 |
| MspA1I | CMGCKG | 1 cut(s) | 2288 |
| MspI | CCGG | 5 cut(s) | 167, 1210, 1938, 2181, 2484 |
| MspR9I | CCNGG | 9 cut(s) | 167, 216, 330, 402, 1589, 1938, 1939, 2446, 2492 |
| MunI | CAATTG | 2 cut(s) | 793, 1721 |
| MvaI | CCWGG | 6 cut(s) | 216, 330, 402, 1589, 2446, 2492 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 86, 208, 275, 406, 1485, 2137 |
| NciI | CCSGG | 3 cut(s) | 167, 1938, 1939 |
| NcoI | CCATGG | 1 cut(s) | 1924 |
| NdeI | CATATG | 1 cut(s) | 154 |
| NdeII | GATC | 9 cut(s) | 847, 917, 953, 1024, 1507, 1511, 1784, 1909, 2524 |
| NlaIV | GGNNCC | 7 cut(s) | 58, 90, 472, 994, 1263, 1303, 1415 |
| NmuCI | GTSAC | 6 cut(s) | 122, 596, 671, 864, 1434, 2223 |
| NspI | RCATGY | 3 cut(s) | 202, 409, 872 |
| PaeI | GCATGC | 2 cut(s) | 202, 409 |
| PaeR7I | CTCGAG | 1 cut(s) | 726 |
| PagI | TCATGA | 1 cut(s) | 1564 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 47, 2243 |
| PfoI | TCCNGGA | 1 cut(s) | 1587 |
| PleI | GAGTC | 7 cut(s) | 2, 701, 1120, 1441, 1576, 2201, 2474 |
| PpsI | GAGTC | 7 cut(s) | 2, 701, 1120, 1441, 1576, 2201, 2474 |
| PpuMI | RGGWCCY | 2 cut(s) | 815, 1414 |
| PshAI | GACNNNNGTC | 1 cut(s) | 129 |
| PshBI | ATTAAT | 1 cut(s) | 765 |
| Psp124BI | GAGCTC | 1 cut(s) | 2254 |
| Psp5II | RGGWCCY | 2 cut(s) | 815, 1414 |
| Psp6I | CCWGG | 6 cut(s) | 214, 328, 400, 1587, 2444, 2490 |
| PspFI | CCCAGC | 1 cut(s) | 68 |
| PspGI | CCWGG | 6 cut(s) | 214, 328, 400, 1587, 2444, 2490 |
| PspN4I | GGNNCC | 7 cut(s) | 58, 90, 472, 994, 1263, 1303, 1415 |
| PspOMI | GGGCCC | 1 cut(s) | 56 |
| PspPI | GGNCC | 7 cut(s) | 56, 57, 71, 815, 1414, 2075, 2442 |
| PspPPI | RGGWCCY | 2 cut(s) | 815, 1414 |
| PstI | CTGCAG | 1 cut(s) | 838 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1037 |
| PsuI | RGATCY | 1 cut(s) | 1784 |
| PvuII | CAGCTG | 1 cut(s) | 2288 |
| RsaI | GTAC | 5 cut(s) | 160, 284, 629, 1257, 1407 |
| RsaNI | GTAC | 5 cut(s) | 159, 283, 628, 1256, 1406 |
| RseI | CAYNNNNRTG | 3 cut(s) | 605, 765, 1779 |
| SacI | GAGCTC | 1 cut(s) | 2254 |
| Sau3AI | GATC | 9 cut(s) | 847, 917, 953, 1024, 1507, 1511, 1784, 1909, 2524 |
| Sau96I | GGNCC | 7 cut(s) | 56, 57, 71, 815, 1414, 2075, 2442 |
| SchI | GAGTC | 7 cut(s) | 2, 701, 1121, 1442, 1577, 2201, 2474 |
| ScrFI | CCNGG | 9 cut(s) | 167, 216, 330, 402, 1589, 1938, 1939, 2446, 2492 |
| SduI | GDGCHC | 6 cut(s) | 60, 91, 657, 2254, 2439, 2509 |
| SfaNI | GCATC | 8 cut(s) | 521, 1466, 2101, 2191, 2323, 2341, 2428, 2446 |
| SfcI | CTRYAG | 4 cut(s) | 81, 834, 1005, 1347 |
| Sfr274I | CTCGAG | 1 cut(s) | 726 |
| SinI | GGWCC | 2 cut(s) | 815, 1414 |
| SlaI | CTCGAG | 1 cut(s) | 726 |
| SmaI | CCCGGG | 1 cut(s) | 1939 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 605, 765, 1779 |
| SmlI | CTYRAG | 2 cut(s) | 726, 823 |
| SmoI | CTYRAG | 2 cut(s) | 726, 823 |
| SphI | GCATGC | 2 cut(s) | 202, 409 |
| SsiI | CCGC | 2 cut(s) | 142, 1066 |
| SspI | AATATT | 1 cut(s) | 1991 |
| SspMI | CTAG | 4 cut(s) | 411, 819, 1116, 2463 |
| SstI | GAGCTC | 1 cut(s) | 2254 |
| StyD4I | CCNGG | 9 cut(s) | 165, 214, 328, 400, 1587, 1936, 1937, 2444, 2490 |
| StyI | CCWWGG | 1 cut(s) | 1924 |
| TaaI | ACNGT | 4 cut(s) | 282, 938, 1039, 1546 |
| TaiI | ACGT | 1 cut(s) | 46 |
| TaqI | TCGA | 4 cut(s) | 727, 916, 1510, 2527 |
| TatI | WGTACW | 2 cut(s) | 627, 1255 |
| TauI | GCSGC | 1 cut(s) | 145 |
| TscAI | CASTG | 7 cut(s) | 102, 522, 561, 601, 612, 1549, 1903 |
| TseFI | GTSAC | 6 cut(s) | 122, 596, 671, 864, 1434, 2223 |
| Tsp45I | GTSAC | 6 cut(s) | 122, 596, 671, 864, 1434, 2223 |
| TspDTI | ATGAA | 6 cut(s) | 236, 509, 786, 912, 1688, 1812 |
| TspGWI | ACGGA | 4 cut(s) | 631, 700, 1119, 1345 |
| TspMI | CCCGGG | 1 cut(s) | 1937 |
| TspRI | CASTG | 7 cut(s) | 102, 522, 561, 601, 612, 1549, 1903 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 47, 2243 |
| VpaK11BI | GGWCC | 2 cut(s) | 815, 1414 |
| VspI | ATTAAT | 1 cut(s) | 765 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 81 |
| XapI | RAATTY | 5 cut(s) | 388, 682, 1882, 2056, 2134 |
| XceI | RCATGY | 3 cut(s) | 202, 409, 872 |
| XhoI | CTCGAG | 1 cut(s) | 726 |
| XmaI | CCCGGG | 1 cut(s) | 1937 |
| XspI | CTAG | 4 cut(s) | 411, 819, 1116, 2463 |