Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Forward (+)

21812708 .. 21820537

Gene Structure 7830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2379 bp

ATGCCAGCTTCTCCTTCCTTCCCATCCGCAGACGGCCGCGGCAAATGGAGGAAGCGAAAGCGGGACCCCCAAATCCGCCGCCGGCCTCGCGACGACGACGAAGAAGACGACGACGACGCCGCCGCCGATGACAACAACAACAACGACCTCGACCACGACGACTCCGACCCTACCGCACCCGATCCCGCCCCGCACGAGACCGAGGTCCTCGACGGCGGTGTCCGCCACAACGATTTCCCTCCCGTCGTTCTGCGCGCCGTGAATAGGCCCCACTCCTCGGTCCTCGCGATTGCGGCGGTCGAGCGGGCCAACCACATTAACTCCGCCGGCGACGGCAAGGGTCCGGTGAGTCCTCTGGTGCTGGAGAATGTGTCGCACGGCCAGCTTCAGGCCTTGTCCGCCGTGCCGGCCGATAGTGCGTCGTTGGATCAGGACCGTCCAGATGGCGCCAGCTCGTCTTATGTCATTACTCCGCCGGCGATTATGGAAGGCGGCGGCGTTGTGAAGCGGTATGGGAGTAGAGTTCTTGTGGTTCCAATGCACGCAGATTGGTTTTCACCTGTTACAGTGCATCGACTGGAGAGACAGGTGGTGCCACATTTTTTCTCAGGGAAATCACCAGAGTTTACTCCTGAGATGTACATGCAAAGTAGGAATGAAATTGTTGCCAAGTACATGGAGAACCCAGAGAAGAGGCTTACAGTTTCTGATTGCACAAAATTAACAAGCCATCTAAATACTGAAGATTTGACCCGAATTGTTCGGTTTCTTGATCACTGGGGAATTATCAATTACTCTGCCGCCGAACCAAGTCCTGAGCCTTGGAATGGTAATTCCTACTTAAGGGAGGAGCAAAATGGTGAGATTCATGTTCCGTCAGCTGCGTTGAAGTCGATTGATAGTTTAATCAAGTTTGACAAGCCCAGATGTAGGCTTAAGGCAGCTGATGTTTATAAGTCATTGTCCTGTCATGACAACGACGACGACGTCTCTGATTTGGACAATAGAATTCGAAAACGTCTATGTGAAAATCATTGCAATTATTGTTCTTGCTCTCTTCCCGGTGTATGCTATCAGTCACAGAAGGAGGTTGATGTATACCTCTGCTGTAATTGCTTCCATGAGGGAAGATATGTTGTGGGTCATTCAAACGTAGATTTCATACGAGTGGATTCGACAAAAGATTATGCTGATCTAGATGGAGAAAATTGGACTGATCAAGAAACCCTACTGCTGCTTGAGGCAATGGAAATCTATAATGAGAACTGGAATGAAATTGCAGAGCATGTTGGTACAAAGTCCAAAGCGCAATGTATCCTTCATTTTCTACGTCTGCCTGTGGAGGATGGCTTGCTGGAAAATATTGAAGTTCCAGGGATACCTCTTTCATCCAACTCGTCAAGTAGAGATCAGGGCGGATTTCATTCAACTTCAAATGGGAATTCAGCAGGATCCTGCCTACTAGATGGTAGTTCTGAAAGCAGGTTCCCCTTTGCAAATTCTGGGAATCCAGTCATGTCCCTGGTTGCCTTTCTGGCCTCTTCTGTCGGGCCAAGAGTTGCTGCATCTTGTGCCCATGCAGCCTTGGCAGTGTTGTCTGAGGACAATGGCTTATCTGCTTCTGGAAGTAACTTGCACGAAGGATCAGGAGGACATAGGATGAACTTGGAGAGCAGGCATGGTCAAGGTGGCAATCATGGAATTACTGCAAATTCAGTTCAGCAAAAGGAAGAGAACTCAGCAGGACAAGGTTCTTGGGGTACAAATGAGGCAGTGGCAACCCCAGTACCTGCAGAAAAGGTTAAAGCTGCTGCGGAAGCTGGCCTTGCTGCTGCTGCAATAAAAGCAAAATTGTTTGCTGATCATGAAGAACGGGAAATTCAGAGGCTATCTGCTAATATCGTAAACCATCAGTTGAAGAGATTGGAGTTGAAGTTAAAGCAGTTTGCAGAAGTGGAGACTTACCTAATGAAAGAATGTGAACAAGTGGAGAAGACAAGGCAAAGGATGATTGCTGAACGTACCCGTCTTATATCAACCCGGTTTGGACCTGCGGGAGTCACTCCACCTATAAACTTAGCAGGTGTAGGTCCTTCTATGGCCAATAATAATACTGGTAACAATAGGCAACAAATTATGTCACCATCAGCTTCCCAGCCAAGCGTATCCGGGTACAGCAACAACCAACCAGTCCATTCTCACATGCCTTTCATGCCACAGCAATCCATGCTAGGGTTAGGACCGAGGATGCCCTTGTCATCCATACAAGCCTCCTCATCAGCTCCAAATGCCATGTTTAATTCCTCAGGGACTGGTCGTCCGACACTAAATCATCCGATGCTGAGGCCTGTACCAGGTACTAGCTCTGGTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

793

Amino Acids

86.17

Weight (kDa)

5.65

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	188 - 265	4.5e-19	SWIRM domain
Myb_DNA-binding	PF00249	402 - 444	4e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	404 - 446	3.7e-08	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	607 - 680	1e-24	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	954
AarI	CACCTGC	1 cut(s)	2072
AasI	GACNNNNNNGTC	2 cut(s)	218, 986
AatII	GACGTC	1 cut(s)	990
Acc36I	ACCTGC	4 cut(s)	1473, 1798, 2059, 2072
AccB1I	GGYRCC	2 cut(s)	446, 592
AccBSI	CCGCTC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	1098
AccII	CGCG	4 cut(s)	39, 90, 255, 287
AclWI	GGATC	5 cut(s)	176, 435, 1446, 1459, 1651
AcoI	YGGCCR	4 cut(s)	34, 379, 408, 2100
AcsI	RAATTY	5 cut(s)	1008, 1441, 1498, 1711, 1878
AcuI	CTGAAG	2 cut(s)	371, 762
AcyI	GRCGYC	3 cut(s)	117, 447, 987
AfaI	GTAC	9 cut(s)	641, 674, 1294, 1762, 1788, 2023, 2174, 2352, 2359
AfiI	CCNNNNNNNGG	8 cut(s)	264, 277, 388, 827, 843, 930, 2232, 2354
AflII	CTTAAG	2 cut(s)	841, 935
AgsI	TTSAA	7 cut(s)	889, 1149, 1367, 1428, 1434, 1918, 1933
AhdI	GACNNNNNGTC	1 cut(s)	2316
AjnI	CCWGG	3 cut(s)	1372, 1521, 2353
Alw26I	GTCTC	4 cut(s)	191, 577, 994, 1952
AlwI	GGATC	5 cut(s)	176, 435, 1446, 1459, 1651
AlwNI	CAGNNNCTG	3 cut(s)	707, 1790, 2312
ApoI	RAATTY	5 cut(s)	1008, 1441, 1498, 1711, 1878
AspLEI	GCGC	4 cut(s)	255, 257, 449, 1309
AsuC2I	CCSGG	3 cut(s)	1062, 2041, 2170
AsuHPI	GGTGA	5 cut(s)	358, 549, 609, 872, 2133
AsuII	TTCGAA	1 cut(s)	1012
AvaII	GGWCC	8 cut(s)	64, 205, 280, 341, 433, 2048, 2090, 2240
AxyI	CCTNAGG	1 cut(s)	2305
BaeGI	GKGCMC	1 cut(s)	1576
BaeI	ACNNNNGTAYC	2 cut(s)	1770, 1803
BalI	TGGCCA	1 cut(s)	2102
BamHI	GGATCC	1 cut(s)	1451
BanI	GGYRCC	2 cut(s)	446, 592
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	111, 2000
BbvCI	CCTCAGC	1 cut(s)	2342
BccI	CCATC	8 cut(s)	31, 437, 738, 1193, 1340, 1460, 1917, 2152
BceAI	ACGGC	6 cut(s)	49, 229, 242, 349, 386, 394
BciT130I	CCWGG	3 cut(s)	1374, 1523, 2355
BciVI	GTATCC	3 cut(s)	1325, 1371, 2176
BclI	TGATCA	3 cut(s)	772, 1216, 1861
BcnI	CCSGG	3 cut(s)	1062, 2041, 2170
BcoDI	GTCTC	4 cut(s)	191, 577, 994, 1952
BfaI	CTAG	4 cut(s)	1196, 1463, 2231, 2361
BfmI	CTRYAG	1 cut(s)	1791
BfoI	RGCGCY	1 cut(s)	450
BfrI	CTTAAG	2 cut(s)	841, 935
BfuAI	ACCTGC	4 cut(s)	1473, 1798, 2059, 2072
BfuI	GTATCC	3 cut(s)	1325, 1371, 2176
BglI	GCCNNNNNGGC	2 cut(s)	407, 1535
Bme1390I	CCNGG	6 cut(s)	1062, 1374, 1523, 2041, 2170, 2355
Bme18I	GGWCC	8 cut(s)	64, 205, 280, 341, 433, 2048, 2090, 2240
BmeRI	GACNNNNNGTC	1 cut(s)	2316
BmiI	GGNNCC	9 cut(s)	65, 66, 269, 342, 448, 534, 594, 1453, 1487
BmrFI	CCNGG	6 cut(s)	1062, 1374, 1523, 2041, 2170, 2355
BmrI	ACTGGG	2 cut(s)	787, 1778
BmsI	GCATC	4 cut(s)	580, 1574, 2238, 2328
BmuI	ACTGGG	2 cut(s)	787, 1778
BoxI	GACNNNNGTC	1 cut(s)	203
BpiI	GAAGAC	2 cut(s)	111, 2000
BpmI	CTGGAG	2 cut(s)	383, 599
Bpu10I	CCTNAGC	2 cut(s)	816, 2342
Bpu14I	TTCGAA	1 cut(s)	1012
BpuEI	CTTGAG	1 cut(s)	1259
BpuMI	CCSGG	3 cut(s)	1062, 2041, 2170
BsaHI	GRCGYC	3 cut(s)	117, 447, 987
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	8 cut(s)	37, 201, 276, 821, 1373, 1521, 1584, 2243
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	8 cut(s)	146, 176, 305, 335, 356, 386, 1919, 1949
Bsc4I	CCNNNNNNNGG	8 cut(s)	264, 277, 388, 827, 843, 930, 2232, 2354
Bse118I	RCCGGY	4 cut(s)	81, 326, 406, 475
Bse1I	ACTGG	8 cut(s)	582, 782, 1271, 1511, 1784, 2119, 2189, 2317
Bse21I	CCTNAGG	1 cut(s)	2305
Bse3DI	GCAATG	3 cut(s)	1033, 1251, 1316
BseBI	CCWGG	3 cut(s)	1374, 1523, 2355
BseDI	CCNNGG	8 cut(s)	37, 201, 276, 821, 1373, 1521, 1584, 2243
BseGI	GGATG	8 cut(s)	23, 1351, 1388, 1665, 2013, 2253, 2258, 2332
BseLI	CCNNNNNNNGG	8 cut(s)	264, 277, 388, 827, 843, 930, 2232, 2354
BseMI	GCAATG	3 cut(s)	1033, 1251, 1316
BseMII	CTCAG	7 cut(s)	621, 624, 807, 1590, 1752, 2319, 2333
BseNI	ACTGG	8 cut(s)	582, 782, 1271, 1511, 1784, 2119, 2189, 2317
BsePI	GCGCGC	1 cut(s)	253
BseRI	GAGGAG	3 cut(s)	265, 863, 2263
BseSI	GKGCMC	1 cut(s)	1576
BseX3I	CGGCCG	2 cut(s)	34, 408
BseYI	CCCAGC	1 cut(s)	2154
Bsh1236I	CGCG	4 cut(s)	39, 90, 255, 287
Bsh1285I	CGRYCG	3 cut(s)	37, 300, 411
BshNI	GGYRCC	2 cut(s)	446, 592
BsiEI	CGRYCG	3 cut(s)	37, 300, 411
BsiSI	CCGG	8 cut(s)	82, 327, 344, 407, 476, 1062, 2041, 2169
BslFI	GGGAC	3 cut(s)	77, 1504, 2323
BslI	CCNNNNNNNGG	8 cut(s)	264, 277, 388, 827, 843, 930, 2232, 2354
BsmAI	GTCTC	4 cut(s)	191, 577, 994, 1952
BsmBI	CGTCTC	1 cut(s)	994
BsmFI	GGGAC	3 cut(s)	77, 1504, 2323
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	1012
Bsp1286I	GDGCHC	1 cut(s)	1576
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	9 cut(s)	181, 427, 772, 1192, 1216, 1408, 1451, 1643, 1861
Bsp68I	TCGCGA	2 cut(s)	90, 287
BspCNI	CTCAG	7 cut(s)	620, 625, 808, 1591, 1751, 2318, 2334
BspFNI	CGCG	4 cut(s)	39, 90, 255, 287
BspHI	TCATGA	2 cut(s)	970, 1864
BspLI	GGNNCC	9 cut(s)	65, 66, 269, 342, 448, 534, 594, 1453, 1487
BspMAI	CTGCAG	1 cut(s)	1795
BspMI	ACCTGC	4 cut(s)	1473, 1798, 2059, 2072
BspPI	GGATC	5 cut(s)	176, 435, 1446, 1459, 1651
BspT104I	TTCGAA	1 cut(s)	1012
BspT107I	GGYRCC	2 cut(s)	446, 592
BspTI	CTTAAG	2 cut(s)	841, 935
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	304
BsrDI	GCAATG	3 cut(s)	1033, 1251, 1316
BsrFI	RCCGGY	4 cut(s)	81, 326, 406, 475
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	8 cut(s)	582, 782, 1271, 1511, 1784, 2119, 2189, 2317
BssAI	RCCGGY	4 cut(s)	81, 326, 406, 475
BssECI	CCNNGG	8 cut(s)	37, 201, 276, 821, 1373, 1521, 1584, 2243
BssHII	GCGCGC	1 cut(s)	253
BssMI	GATC	9 cut(s)	181, 427, 772, 1192, 1216, 1408, 1451, 1643, 1861
BssNAI	GTATAC	1 cut(s)	1099
BssNI	GRCGYC	3 cut(s)	117, 447, 987
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	2 cut(s)	821, 1584
Bst1107I	GTATAC	1 cut(s)	1099
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	3 cut(s)	1374, 1523, 2355
Bst4CI	ACNGT	3 cut(s)	437, 568, 703
Bst6I	CTCTTC	5 cut(s)	686, 1062, 1546, 1725, 1913
BstACI	GRCGYC	3 cut(s)	117, 447, 987
BstAFI	CTTAAG	2 cut(s)	841, 935
BstAPI	GCANNNNNTGC	2 cut(s)	1571, 2227
BstAUI	TGTACA	1 cut(s)	639
BstBI	TTCGAA	1 cut(s)	1012
BstDEI	CTNAG	8 cut(s)	607, 633, 816, 1599, 1738, 2077, 2305, 2342
BstDSI	CCRYGG	1 cut(s)	37
BstENI	CCTNNNNNAGG	2 cut(s)	841, 2352
BstF5I	GGATG	8 cut(s)	23, 1351, 1388, 1665, 2013, 2253, 2258, 2332
BstFNI	CGCG	4 cut(s)	39, 90, 255, 287
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	4 cut(s)	255, 257, 449, 1309
BstKTI	GATC	9 cut(s)	184, 430, 775, 1195, 1219, 1411, 1454, 1646, 1864
BstMAI	GTCTC	4 cut(s)	191, 577, 994, 1952
BstMBI	GATC	9 cut(s)	181, 427, 772, 1192, 1216, 1408, 1451, 1643, 1861
BstMCI	CGRYCG	3 cut(s)	37, 300, 411
BstNI	CCWGG	3 cut(s)	1374, 1523, 2355
BstNSI	RCATGY	3 cut(s)	646, 1289, 2206
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	6 cut(s)	1060, 1372, 1521, 2039, 2168, 2353
BstSFI	CTRYAG	1 cut(s)	1791
BstSLI	GKGCMC	1 cut(s)	1576
BstUI	CGCG	4 cut(s)	39, 90, 255, 287
BstV2I	GAAGAC	2 cut(s)	111, 2000
BstX2I	RGATCY	1 cut(s)	1451
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	1451
BstZ17I	GTATAC	1 cut(s)	1099
BstZI	CGGCCG	2 cut(s)	34, 408
Bsu36I	CCTNAGG	1 cut(s)	2305
BsuI	GTATCC	3 cut(s)	1325, 1371, 2176
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	8 cut(s)	23, 1351, 1388, 1665, 2013, 2253, 2258, 2332
BtsI	GCAGTG	2 cut(s)	1596, 1779
BtsIMutI	CAGTG	4 cut(s)	573, 775, 1596, 1779
BtuMI	TCGCGA	2 cut(s)	90, 287
BveI	ACCTGC	4 cut(s)	1473, 1798, 2059, 2072
CaiI	CAGNNNCTG	3 cut(s)	707, 1790, 2312
CciI	TCATGA	2 cut(s)	970, 1864
CfoI	GCGC	4 cut(s)	255, 257, 449, 1309
Cfr10I	RCCGGY	4 cut(s)	81, 326, 406, 475
Cfr42I	CCGCGG	1 cut(s)	40
CseI	GACGC	2 cut(s)	125, 408
CsiI	ACCWGGT	1 cut(s)	2353
Csp6I	GTAC	9 cut(s)	640, 673, 1293, 1761, 1787, 2022, 2173, 2351, 2358
CviQI	GTAC	9 cut(s)	640, 673, 1293, 1761, 1787, 2022, 2173, 2351, 2358
DdeI	CTNAG	8 cut(s)	607, 633, 816, 1599, 1738, 2077, 2305, 2342
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	9 cut(s)	183, 429, 774, 1194, 1218, 1410, 1453, 1645, 1863
DpnII	GATC	9 cut(s)	181, 427, 772, 1192, 1216, 1408, 1451, 1643, 1861
DrdI	GACNNNNNNGTC	2 cut(s)	218, 986
DriI	GACNNNNNGTC	1 cut(s)	2316
DseDI	GACNNNNNNGTC	2 cut(s)	218, 986
EaeI	YGGCCR	4 cut(s)	34, 379, 408, 2100
EagI	CGGCCG	2 cut(s)	34, 408
Eam1104I	CTCTTC	5 cut(s)	686, 1062, 1546, 1725, 1913
Eam1105I	GACNNNNNGTC	1 cut(s)	2316
EarI	CTCTTC	5 cut(s)	686, 1062, 1546, 1725, 1913
EciI	GGCGGA	6 cut(s)	65, 212, 313, 388, 462, 1431
EclXI	CGGCCG	2 cut(s)	34, 408
Eco130I	CCWWGG	2 cut(s)	821, 1584
Eco147I	AGGCCT	2 cut(s)	392, 2347
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	8 cut(s)	64, 205, 280, 341, 433, 2048, 2090, 2240
Eco52I	CGGCCG	2 cut(s)	34, 408
Eco57I	CTGAAG	2 cut(s)	371, 762
Eco81I	CCTNAGG	1 cut(s)	2305
EcoNI	CCTNNNNNAGG	2 cut(s)	841, 2352
EcoO109I	RGGNCCY	4 cut(s)	64, 205, 267, 2090
EcoRI	GAATTC	2 cut(s)	1008, 1441
EcoRII	CCWGG	3 cut(s)	1372, 1521, 2353
EcoT14I	CCWWGG	2 cut(s)	821, 1584
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	2 cut(s)	821, 1584
Esp3I	CGTCTC	1 cut(s)	994
FalI	AAGNNNNNCTT	2 cut(s)	1809, 1841
FaqI	GGGAC	3 cut(s)	77, 1504, 2323
FauI	CCCGC	5 cut(s)	54, 193, 198, 297, 2047
FbaI	TGATCA	3 cut(s)	772, 1216, 1861
FblI	GTMKAC	1 cut(s)	1098
FokI	GGATG	8 cut(s)	10, 1358, 1375, 1672, 2020, 2245, 2260, 2319
FspBI	CTAG	4 cut(s)	1196, 1463, 2231, 2361
GlaI	GCGC	4 cut(s)	254, 256, 448, 1308
GsaI	CCCAGC	1 cut(s)	2158
GsuI	CTGGAG	2 cut(s)	383, 599
HaeII	RGCGCY	1 cut(s)	450
HapII	CCGG	8 cut(s)	82, 327, 344, 407, 476, 1062, 2041, 2169
HgaI	GACGC	2 cut(s)	125, 408
HhaI	GCGC	4 cut(s)	255, 257, 449, 1309
Hin1I	GRCGYC	3 cut(s)	117, 447, 987
Hin6I	GCGC	4 cut(s)	253, 255, 447, 1307
HinP1I	GCGC	4 cut(s)	253, 255, 447, 1307
HinfI	GANTC	6 cut(s)	161, 349, 865, 1172, 1507, 2058
HpaII	CCGG	8 cut(s)	82, 327, 344, 407, 476, 1062, 2041, 2169
HphI	GGTGA	5 cut(s)	358, 549, 609, 872, 2133
Hpy166II	GTNNAC	4 cut(s)	627, 1099, 1906, 1982
Hpy188I	TCNGA	8 cut(s)	166, 709, 994, 1477, 1600, 1884, 2322, 2337
Hpy8I	GTNNAC	4 cut(s)	627, 1099, 1906, 1982
HpyAV	CCTTC	7 cut(s)	24, 28, 482, 1078, 1328, 1634, 2103
HpyCH4III	ACNGT	3 cut(s)	437, 568, 703
HpyCH4IV	ACGT	5 cut(s)	987, 1018, 1152, 1330, 2020
HpyF3I	CTNAG	8 cut(s)	607, 633, 816, 1599, 1738, 2077, 2305, 2342
HpySE526I	ACGT	5 cut(s)	987, 1018, 1152, 1330, 2020
Hsp92I	GRCGYC	3 cut(s)	117, 447, 987
HspAI	GCGC	4 cut(s)	253, 255, 447, 1307
KasI	GGCGCC	1 cut(s)	446
KflI	GGGWCCC	1 cut(s)	64
KroI	GCCGGC	4 cut(s)	81, 326, 406, 475
KroNI	GCCGGC	4 cut(s)	83, 328, 408, 477
Ksp22I	TGATCA	3 cut(s)	772, 1216, 1861
KspI	CCGCGG	1 cut(s)	40
Kzo9I	GATC	9 cut(s)	181, 427, 772, 1192, 1216, 1408, 1451, 1643, 1861
LmnI	GCTCC	2 cut(s)	850, 2287
LweI	GCATC	4 cut(s)	580, 1574, 2238, 2328
MabI	ACCWGGT	1 cut(s)	2353
MaeI	CTAG	4 cut(s)	1196, 1463, 2231, 2361
MaeII	ACGT	5 cut(s)	987, 1018, 1152, 1330, 2020
MaeIII	GTNAC	6 cut(s)	562, 1077, 1628, 2059, 2117, 2139
MalI	GATC	9 cut(s)	183, 429, 774, 1194, 1218, 1410, 1453, 1645, 1863
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	9 cut(s)	181, 427, 772, 1192, 1216, 1408, 1451, 1643, 1861
MflI	RGATCY	1 cut(s)	1451
MhlI	GDGCHC	1 cut(s)	1576
MlsI	TGGCCA	1 cut(s)	2102
MluNI	TGGCCA	1 cut(s)	2102
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	3 cut(s)	155, 358, 2067
MmeI	TCCRAC	4 cut(s)	189, 405, 1416, 2345
Mox20I	TGGCCA	1 cut(s)	2102
MreI	CGCCGGCG	2 cut(s)	326, 475
MroNI	GCCGGC	4 cut(s)	81, 326, 406, 475
MscI	TGGCCA	1 cut(s)	2102
MseI	TTAA	8 cut(s)	318, 722, 842, 905, 936, 1803, 1937, 2298
MslI	CAYNNNNRTG	1 cut(s)	1166
Msp20I	TGGCCA	1 cut(s)	2102
MspA1I	CMGCKG	3 cut(s)	39, 881, 944
MspCI	CTTAAG	2 cut(s)	841, 935
MspI	CCGG	8 cut(s)	82, 327, 344, 407, 476, 1062, 2041, 2169
MspR9I	CCNGG	6 cut(s)	1062, 1374, 1523, 2041, 2170, 2355
MvaI	CCWGG	3 cut(s)	1374, 1523, 2355
MvnI	CGCG	4 cut(s)	39, 90, 255, 287
NaeI	GCCGGC	4 cut(s)	83, 328, 408, 477
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	3 cut(s)	1062, 2041, 2170
NdeII	GATC	9 cut(s)	181, 427, 772, 1192, 1216, 1408, 1451, 1643, 1861
NgoMIV	GCCGGC	4 cut(s)	81, 326, 406, 475
NlaIV	GGNNCC	9 cut(s)	65, 66, 269, 342, 448, 534, 594, 1453, 1487
NmuCI	GTSAC	3 cut(s)	1077, 2059, 2139
NruI	TCGCGA	2 cut(s)	90, 287
NspI	RCATGY	3 cut(s)	646, 1289, 2206
NspV	TTCGAA	1 cut(s)	1012
PagI	TCATGA	2 cut(s)	970, 1864
PaqCI	CACCTGC	1 cut(s)	2072
PauI	GCGCGC	1 cut(s)	253
PceI	AGGCCT	2 cut(s)	392, 2347
PcsI	WCGNNNNNNNCGW	6 cut(s)	105, 123, 156, 162, 284, 984
PdiI	GCCGGC	4 cut(s)	83, 328, 408, 477
PfeI	GAWTC	3 cut(s)	865, 1172, 1507
PflFI	GACNNNGTC	1 cut(s)	986
PleI	GAGTC	3 cut(s)	155, 357, 2066
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	3 cut(s)	155, 357, 2066
PpuMI	RGGWCCY	3 cut(s)	64, 205, 2090
PshAI	GACNNNNGTC	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	954
Psp5II	RGGWCCY	3 cut(s)	64, 205, 2090
Psp6I	CCWGG	3 cut(s)	1372, 1521, 2353
PspFI	CCCAGC	1 cut(s)	2154
PspGI	CCWGG	3 cut(s)	1372, 1521, 2353
PspN4I	GGNNCC	9 cut(s)	65, 66, 269, 342, 448, 534, 594, 1453, 1487
PspPPI	RGGWCCY	3 cut(s)	64, 205, 2090
PstI	CTGCAG	1 cut(s)	1795
PstNI	CAGNNNCTG	3 cut(s)	707, 1790, 2312
PsuI	RGATCY	1 cut(s)	1451
PsyI	GACNNNGTC	1 cut(s)	986
PteI	GCGCGC	1 cut(s)	253
PvuII	CAGCTG	2 cut(s)	881, 944
RruI	TCGCGA	2 cut(s)	90, 287
RsaI	GTAC	9 cut(s)	641, 674, 1294, 1762, 1788, 2023, 2174, 2352, 2359
RsaNI	GTAC	9 cut(s)	640, 673, 1293, 1761, 1787, 2022, 2173, 2351, 2358
RseI	CAYNNNNRTG	1 cut(s)	1166
SacII	CCGCGG	1 cut(s)	40
SaqAI	TTAA	8 cut(s)	318, 722, 842, 905, 936, 1803, 1937, 2298
Sau3AI	GATC	9 cut(s)	181, 427, 772, 1192, 1216, 1408, 1451, 1643, 1861
SchI	GAGTC	3 cut(s)	155, 358, 2067
ScrFI	CCNGG	6 cut(s)	1062, 1374, 1523, 2041, 2170, 2355
SduI	GDGCHC	1 cut(s)	1576
SexAI	ACCWGGT	1 cut(s)	2353
SfaNI	GCATC	4 cut(s)	580, 1574, 2238, 2328
SfcI	CTRYAG	1 cut(s)	1791
SfoI	GGCGCC	1 cut(s)	448
Sfr303I	CCGCGG	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	1012
SgrAI	CRCCGGYG	2 cut(s)	326, 475
SgrBI	CCGCGG	1 cut(s)	40
SinI	GGWCC	8 cut(s)	64, 205, 280, 341, 433, 2048, 2090, 2240
SmiMI	CAYNNNNRTG	1 cut(s)	1166
SmlI	CTYRAG	3 cut(s)	841, 935, 1238
SmoI	CTYRAG	3 cut(s)	841, 935, 1238
SseBI	AGGCCT	2 cut(s)	392, 2347
SspDI	GGCGCC	1 cut(s)	446
SspI	AATATT	1 cut(s)	1363
SspMI	CTAG	4 cut(s)	1196, 1463, 2231, 2361
StuI	AGGCCT	2 cut(s)	392, 2347
StyD4I	CCNGG	6 cut(s)	1060, 1372, 1521, 2039, 2168, 2353
StyI	CCWWGG	2 cut(s)	821, 1584
TaaI	ACNGT	3 cut(s)	437, 568, 703
TaiI	ACGT	5 cut(s)	990, 1021, 1155, 1333, 2023
TaqI	TCGA	7 cut(s)	150, 210, 300, 574, 893, 1012, 1175
TaqII	GACCGA	3 cut(s)	215, 268, 2257
TatI	WGTACW	2 cut(s)	639, 672
TauI	GCSGC	9 cut(s)	39, 42, 81, 122, 125, 296, 495, 498, 803
TfiI	GAWTC	3 cut(s)	865, 1172, 1507
Tru1I	TTAA	8 cut(s)	318, 722, 842, 905, 936, 1803, 1937, 2298
Tru9I	TTAA	8 cut(s)	318, 722, 842, 905, 936, 1803, 1937, 2298
TscAI	CASTG	4 cut(s)	573, 782, 1596, 1779
TseFI	GTSAC	3 cut(s)	1077, 2059, 2139
Tsp45I	GTSAC	3 cut(s)	1077, 2059, 2139
TspGWI	ACGGA	1 cut(s)	864
TspRI	CASTG	4 cut(s)	573, 782, 1596, 1779
Tth111I	GACNNNGTC	1 cut(s)	986
Vha464I	CTTAAG	2 cut(s)	841, 935
VpaK11BI	GGWCC	8 cut(s)	64, 205, 280, 341, 433, 2048, 2090, 2240
XagI	CCTNNNNNAGG	2 cut(s)	841, 2352
XapI	RAATTY	5 cut(s)	1008, 1441, 1498, 1711, 1878
XbaI	TCTAGA	1 cut(s)	1195
XceI	RCATGY	3 cut(s)	646, 1289, 2206
XmiI	GTMKAC	1 cut(s)	1098
XspI	CTAG	4 cut(s)	1196, 1463, 2231, 2361
ZraI	GACGTC	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.