Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Forward (+)

18136995 .. 18144368

Gene Structure 7374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2511 bp

ATGCCAGCTTCCCCTTCCTTCCCATCTTCAGACGGGCGCGGCAAATGGAGGAAGCGAAAGCGGGACCCCCAAGTTCGCCGCCGCCCGCGCGACGACGACGACGACGAGGACGACGACGCCGCCGCGGCCGCTGCCGACGACAACAACAACAACAACAACGACCTCGACCACGAAGACTCCGACCCTAGCGCCGCCGCAGCGCCCGATCCCGCCCCGCACGAGACCGAGGTCCTCGACGGTGGGCTCCGCCACAACGATTTCCCTCCCGTCGTTTTGCGCACCGTGAATAGGCCCCACTCCTCGGTTCTCGCGCTTGTGGCGGTCGAGCGGGCCAACCACATTAACTCCGCCGGCGACGGGAAGGGCCCGGTGAGTCCTCTGGTGTTGGAGAATGTGTCGCACGGCCAGCTTCAGGCCTTGTCCGCCGTCCCGGCCGATTGTCCGTCGTTGGATCAGGACCGTCCAGATGGCGCTAGTTCGGCTTATGTCGTTACGCCGCCGGCGATTATGGAAGGCCGCGGCGTTGTGAAGCGGTATGGGAGTAGAGTTCATTTGGTTCCAATGCACGCTGTTTGGGATTTTCCTGTTGGCAGATTGGTTTTCACCGGCTACAGTGCATCGACTGGAGAGACAGGTGGTGCCACATTTTTCTCAGGAAAATCACCAGAGTTTACTCCTGAGATGTACATGCAAAGTAGGAATGAAATTGTTGCCAAGTACATGGAAAACCCAGAGAAGAGGCTTACAGTTTCTGATTGCACAAAATTAACAAGCCATCTAAATACTGAAGATTTGACTCGAATAGTTCGGTTTCTTGATCACTGGGGAATTATCAATTACTCTGCTGCCGCACCAAGTCCTGAGCCTTGGAATGGTAATTCCTACTTAAGGGAGGAGCAAAATGGTGAGATTCATGTTCCATCAGCTGCGTTGAAGTCGATTGATAGTCTGATCAAATTTGACAAGCCCAGATGTAGGCTTAAGGCAGCTGATGTTTATAAGTCATTGTCTTGTCATGATGACGATGATGACACCTCTGATTTGGACAACAGAATTCGAAAACGTCTATGTGAAAATCATTGCAATTATTGTTCTTGTTCTCTTCCCAGTGTATGCTATCAGTCACAGAAGGAGGTTGATGTACTGCTCTGCTCTGACTGCTTCCATGAGGGAAGATATGTTGTGGGCCATTCAAGCATAGATTTTGTACGAGTGGATTCAACAAAAGATTATGGCGATCCAGATGGGGAAAATTGGACTGATCAAGAAACCCTACTGCTGCTTGAGGCCATGGAAATCTATAATGAGAACTGGAATGAAATTGCAGAGCATGTTGGTACAAAGTCAAAAGCACAATGCATACTTCATTTTCTACGTTTGCCTGTGGAGGATGGCCTGCTGGAAAATATTGAAGTTCCAAAGATGCCTCTGTCATCCAACTCGTCAAATAGAGATGATCATGGCGGATTTCATTCAACTTCAAATGGGAATTCAGCAGGATCCTGCCTACTAGATGGTGATTCTGAAAGCAGGTTCCCTTTTGCAAATTCTGGGAATCCAGTCATGTCCCTGGTTGCCTTTCTGGCCTCTTCTGTTGGGCCAAGAGTTGCTGCATCTTGTGCCCATGCAGCCTTGGCAGTGTTGTCTGAGGACAATGGCTTACCTGCTTCTGGAAGTAATTTGCAGGAAGGATCAGGAGGACATAGGATGAACTTGGAGAGCATGCATGGTCAAGGTGGCACTCATAAAAATATTGCAAATTCAGTTCAGCAGAAGGGTAGGCCTTTGAATTTTCATGTTCTTTTCATATTCATTCCCTCTGTCATCCTTTCTCACTTACAGTTCTTCATGGATCAAACTTCAGATGAGAAATCAGCAGGACAAGGTTCTTGGGGTAAAAATGAGGCAGGGGCGACTCCAGTACCTGCAGAAAAAGTTAAAGCTGCTGCCAAAGCTGGCCTTGCAGCTGCTGCAATAAAAGCAAAATTGTTTGCTGATCATGAAGAACGGGAAATTCAGAGGTTATCTGCTAATATTGTAAATCATCAGTTGAAGAGATTGGAGCTGAAGTTAAAGCAGTTTGCAGAAGTGGAAACTTATCTAATGAAAGAATGTGAACAAGTGGAGAAGACAAGGCAGAGGATGGTTGCCGAACGTACCCGTCTTATATCAACTCGGTTTGGAGCTGCTGGAGTTGCTCCACCCATTAACTTAGCAGGTGTTGGTCCTTCCATGGCCAATAATAATTCAAACAATAGGCAACAAATTATGCCATCTTCGGCTTCCCAGCCAAGCGTATCCGGATACAGCAACAACCAACCAGTCCATTCTCACATGCCTTTCATGCCACAACAATCAATGCTAGGATTGGGACCGAGGATGCCCTTGGCGTCCATACAAGCCTCCTCATCAGCTCCAAATGCCATGTTTAATTCCCCAGGGACTGGTCGGCCAACTCTAAGTCATCCAATGCTGAGGCCTGTGCCGGGTACTAGCTCTGGTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

836

Amino Acids

90.77

Weight (kDa)

5.76

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	215 - 280	1.2e-14	SWIRM domain
Myb_DNA-binding	PF00249	417 - 459	4.2e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	419 - 461	3.9e-08	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	652 - 728	1e-24	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	999
AarI	CACCTGC	1 cut(s)	2207
Acc16I	TGCGCA	1 cut(s)	278
Acc36I	ACCTGC	4 cut(s)	1521, 1672, 1933, 2207
AccB1I	GGYRCC	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	2444
AccBSI	CCGCTC	1 cut(s)	328
AccII	CGCG	6 cut(s)	39, 88, 90, 125, 311, 519
AccIII	TCCGGA	1 cut(s)	2300
AclWI	GGATC	7 cut(s)	200, 459, 1232, 1494, 1507, 1699, 1860
AcoI	YGGCCR	5 cut(s)	126, 403, 432, 2235, 2450
AcsI	RAATTY	7 cut(s)	956, 1053, 1489, 1546, 1759, 1789, 2013
AcuI	CTGAAG	5 cut(s)	12, 395, 807, 1845, 2087
AcyI	GRCGYC	2 cut(s)	117, 2390
AfaI	GTAC	8 cut(s)	686, 719, 1143, 1209, 1339, 1923, 2158, 2491
AflII	CTTAAG	2 cut(s)	886, 980
AgsI	TTSAA	9 cut(s)	934, 1194, 1221, 1412, 1476, 1482, 1789, 2053, 2250
AjnI	CCWGG	2 cut(s)	1569, 2437
Alw26I	GTCTC	2 cut(s)	215, 623
AlwI	GGATC	7 cut(s)	200, 459, 1232, 1494, 1507, 1699, 1860
AlwNI	CAGNNNCTG	4 cut(s)	752, 1925, 1970, 2444
Aor13HI	TCCGGA	1 cut(s)	2300
ApaI	GGGCCC	1 cut(s)	368
ApoI	RAATTY	7 cut(s)	956, 1053, 1489, 1546, 1759, 1789, 2013
AspLEI	GCGC	7 cut(s)	39, 90, 191, 202, 279, 313, 473
AsuC2I	CCSGG	3 cut(s)	368, 431, 2487
AsuHPI	GGTGA	5 cut(s)	382, 595, 654, 917, 1529
AsuII	TTCGAA	1 cut(s)	1057
AvaII	GGWCC	5 cut(s)	64, 229, 457, 2225, 2372
BaeGI	GKGCMC	2 cut(s)	368, 1624
BaeI	ACNNNNGTAYC	2 cut(s)	1905, 1938
BalI	TGGCCA	1 cut(s)	2237
BamHI	GGATCC	1 cut(s)	1499
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	2 cut(s)	246, 368
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	2 cut(s)	180, 2135
BbvCI	CCTCAGC	1 cut(s)	2474
BccI	CCATC	9 cut(s)	31, 461, 783, 928, 1238, 1385, 1508, 2137, 2281
BceAI	ACGGC	2 cut(s)	410, 418
BciT130I	CCWGG	2 cut(s)	1571, 2439
BciVI	GTATCC	2 cut(s)	2297, 2308
BclI	TGATCA	5 cut(s)	817, 951, 1261, 1456, 1996
BcnI	CCSGG	3 cut(s)	368, 431, 2487
BcoDI	GTCTC	2 cut(s)	215, 623
BfaI	CTAG	5 cut(s)	186, 474, 1511, 2363, 2493
BfmI	CTRYAG	2 cut(s)	610, 1926
BfoI	RGCGCY	3 cut(s)	192, 203, 474
BfrI	CTTAAG	2 cut(s)	886, 980
BfuAI	ACCTGC	4 cut(s)	1521, 1672, 1933, 2207
BfuI	GTATCC	2 cut(s)	2297, 2308
BglI	GCCNNNNNGGC	3 cut(s)	125, 431, 1583
Bme1390I	CCNGG	5 cut(s)	368, 431, 1571, 2439, 2487
Bme18I	GGWCC	5 cut(s)	64, 229, 457, 2225, 2372
BmrFI	CCNGG	5 cut(s)	368, 431, 1571, 2439, 2487
BmrI	ACTGGG	2 cut(s)	832, 1101
BmsI	GCATC	4 cut(s)	626, 1413, 1622, 2370
BmuI	ACTGGG	2 cut(s)	832, 1101
BoxI	GACNNNNGTC	1 cut(s)	227
BpiI	GAAGAC	2 cut(s)	180, 2135
BpmI	CTGGAG	3 cut(s)	645, 1902, 2211
Bpu10I	CCTNAGC	2 cut(s)	861, 2474
Bpu14I	TTCGAA	1 cut(s)	1057
BpuEI	CTTGAG	1 cut(s)	1304
BpuMI	CCSGG	3 cut(s)	368, 431, 2487
BsaHI	GRCGYC	2 cut(s)	117, 2390
BsaI	GGTCTC	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	2300
BsaXI	ACNNNNNCTCC	8 cut(s)	161, 191, 329, 359, 380, 410, 2054, 2084
Bse118I	RCCGGY	3 cut(s)	350, 499, 605
Bse1I	ACTGG	8 cut(s)	628, 827, 1107, 1316, 1559, 1919, 2321, 2449
Bse3DI	GCAATG	1 cut(s)	1078
BseAI	TCCGGA	1 cut(s)	2300
BseBI	CCWGG	2 cut(s)	1571, 2439
BseGI	GGATG	7 cut(s)	1396, 1433, 1713, 1824, 2148, 2385, 2464
BseMI	GCAATG	1 cut(s)	1078
BseMII	CTCAG	5 cut(s)	666, 669, 852, 1638, 2465
BseNI	ACTGG	8 cut(s)	628, 827, 1107, 1316, 1559, 1919, 2321, 2449
BseRI	GAGGAG	3 cut(s)	289, 908, 2395
BseSI	GKGCMC	2 cut(s)	368, 1624
BseX3I	CGGCCG	2 cut(s)	126, 432
BseYI	CCCAGC	1 cut(s)	2286
Bsh1236I	CGCG	6 cut(s)	39, 88, 90, 125, 311, 519
Bsh1285I	CGRYCG	3 cut(s)	129, 324, 435
BshNI	GGYRCC	1 cut(s)	638
BsiEI	CGRYCG	3 cut(s)	129, 324, 435
BsiSI	CCGG	7 cut(s)	351, 368, 431, 500, 606, 2301, 2486
BslFI	GGGAC	5 cut(s)	77, 413, 1552, 2385, 2455
BsmAI	GTCTC	2 cut(s)	215, 623
BsmFI	GGGAC	5 cut(s)	77, 413, 1552, 2385, 2455
Bso31I	GGTCTC	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	1057
Bsp120I	GGGCCC	1 cut(s)	364
Bsp1286I	GDGCHC	3 cut(s)	246, 368, 1624
Bsp13I	TCCGGA	1 cut(s)	2300
Bsp1407I	TGTACA	1 cut(s)	684
Bsp19I	CCATGG	2 cut(s)	1290, 2232
BspCNI	CTCAG	5 cut(s)	665, 670, 853, 1639, 2466
BspEI	TCCGGA	1 cut(s)	2300
BspFNI	CGCG	6 cut(s)	39, 88, 90, 125, 311, 519
BspHI	TCATGA	2 cut(s)	1015, 1999
BspMAI	CTGCAG	1 cut(s)	1930
BspMI	ACCTGC	4 cut(s)	1521, 1672, 1933, 2207
BspPI	GGATC	7 cut(s)	200, 459, 1232, 1494, 1507, 1699, 1860
BspT104I	TTCGAA	1 cut(s)	1057
BspT107I	GGYRCC	1 cut(s)	638
BspTI	CTTAAG	2 cut(s)	886, 980
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	1078
BsrFI	RCCGGY	3 cut(s)	350, 499, 605
BsrGI	TGTACA	1 cut(s)	684
BsrI	ACTGG	8 cut(s)	628, 827, 1107, 1316, 1559, 1919, 2321, 2449
BssAI	RCCGGY	3 cut(s)	350, 499, 605
BssNI	GRCGYC	2 cut(s)	117, 2390
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	5 cut(s)	866, 1290, 1632, 2232, 2385
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	1571, 2439
Bst4CI	ACNGT	6 cut(s)	239, 283, 461, 614, 748, 1842
Bst6I	CTCTTC	4 cut(s)	731, 1107, 1594, 2048
BstACI	GRCGYC	2 cut(s)	117, 2390
BstAFI	CTTAAG	2 cut(s)	886, 980
BstAPI	GCANNNNNTGC	2 cut(s)	1619, 1970
BstAUI	TGTACA	1 cut(s)	684
BstBI	TTCGAA	1 cut(s)	1057
BstDEI	CTNAG	7 cut(s)	652, 678, 861, 1647, 2212, 2459, 2474
BstDSI	CCRYGG	4 cut(s)	123, 517, 1290, 2232
BstENI	CCTNNNNNAGG	1 cut(s)	886
BstF5I	GGATG	7 cut(s)	1396, 1433, 1713, 1824, 2148, 2385, 2464
BstFNI	CGCG	6 cut(s)	39, 88, 90, 125, 311, 519
BstH2I	RGCGCY	3 cut(s)	192, 203, 474
BstHHI	GCGC	7 cut(s)	39, 90, 191, 202, 279, 313, 473
BstMAI	GTCTC	2 cut(s)	215, 623
BstMCI	CGRYCG	3 cut(s)	129, 324, 435
BstNI	CCWGG	2 cut(s)	1571, 2439
BstNSI	RCATGY	4 cut(s)	691, 1334, 1726, 2338
BstPAI	GACNNNNGTC	1 cut(s)	227
BstSCI	CCNGG	5 cut(s)	366, 429, 1569, 2437, 2485
BstSFI	CTRYAG	2 cut(s)	610, 1926
BstSLI	GKGCMC	2 cut(s)	368, 1624
BstUI	CGCG	6 cut(s)	39, 88, 90, 125, 311, 519
BstV2I	GAAGAC	2 cut(s)	180, 2135
BstX2I	RGATCY	1 cut(s)	1499
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	1499
BstZI	CGGCCG	2 cut(s)	126, 432
BsuI	GTATCC	2 cut(s)	2297, 2308
BtgI	CCRYGG	4 cut(s)	123, 517, 1290, 2232
BtsCI	GGATG	7 cut(s)	1396, 1433, 1713, 1824, 2148, 2385, 2464
BtsI	GCAGTG	1 cut(s)	1644
BtsIMutI	CAGTG	4 cut(s)	619, 820, 1114, 1644
BveI	ACCTGC	4 cut(s)	1521, 1672, 1933, 2207
CaiI	CAGNNNCTG	4 cut(s)	752, 1925, 1970, 2444
CciI	TCATGA	2 cut(s)	1015, 1999
CciNI	GCGGCCGC	1 cut(s)	126
CfoI	GCGC	7 cut(s)	39, 90, 191, 202, 279, 313, 473
Cfr10I	RCCGGY	3 cut(s)	350, 499, 605
Cfr42I	CCGCGG	2 cut(s)	126, 520
CseI	GACGC	2 cut(s)	125, 2379
Csp6I	GTAC	8 cut(s)	685, 718, 1142, 1208, 1338, 1922, 2157, 2490
CviQI	GTAC	8 cut(s)	685, 718, 1142, 1208, 1338, 1922, 2157, 2490
DdeI	CTNAG	7 cut(s)	652, 678, 861, 1647, 2212, 2459, 2474
EaeI	YGGCCR	5 cut(s)	126, 403, 432, 2235, 2450
EagI	CGGCCG	2 cut(s)	126, 432
Eam1104I	CTCTTC	4 cut(s)	731, 1107, 1594, 2048
EarI	CTCTTC	4 cut(s)	731, 1107, 1594, 2048
EciI	GGCGGA	4 cut(s)	236, 337, 412, 1479
EclXI	CGGCCG	2 cut(s)	126, 432
Eco130I	CCWWGG	5 cut(s)	866, 1290, 1632, 2232, 2385
Eco147I	AGGCCT	3 cut(s)	416, 1783, 2479
Eco24I	GRGCYC	2 cut(s)	246, 368
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	5 cut(s)	64, 229, 457, 2225, 2372
Eco52I	CGGCCG	2 cut(s)	126, 432
Eco57I	CTGAAG	5 cut(s)	12, 395, 807, 1845, 2087
EcoNI	CCTNNNNNAGG	1 cut(s)	886
EcoO109I	RGGNCCY	4 cut(s)	64, 229, 291, 364
EcoRI	GAATTC	2 cut(s)	1053, 1489
EcoRII	CCWGG	2 cut(s)	1569, 2437
EcoT14I	CCWWGG	5 cut(s)	866, 1290, 1632, 2232, 2385
EcoT22I	ATGCAT	2 cut(s)	1361, 1728
EcoT38I	GRGCYC	2 cut(s)	246, 368
ErhI	CCWWGG	5 cut(s)	866, 1290, 1632, 2232, 2385
FalI	AAGNNNNNCTT	2 cut(s)	1944, 1976
FaqI	GGGAC	5 cut(s)	77, 413, 1552, 2385, 2455
FauI	CCCGC	5 cut(s)	54, 93, 217, 222, 321
FbaI	TGATCA	5 cut(s)	817, 951, 1261, 1456, 1996
FokI	GGATG	7 cut(s)	1403, 1420, 1720, 1811, 2155, 2392, 2451
FriOI	GRGCYC	2 cut(s)	246, 368
FspBI	CTAG	5 cut(s)	186, 474, 1511, 2363, 2493
FspI	TGCGCA	1 cut(s)	278
GlaI	GCGC	7 cut(s)	38, 89, 190, 201, 278, 312, 472
GsaI	CCCAGC	1 cut(s)	2290
GsuI	CTGGAG	3 cut(s)	645, 1902, 2211
HaeII	RGCGCY	3 cut(s)	192, 203, 474
HapII	CCGG	7 cut(s)	351, 368, 431, 500, 606, 2301, 2486
HgaI	GACGC	2 cut(s)	125, 2379
HhaI	GCGC	7 cut(s)	39, 90, 191, 202, 279, 313, 473
Hin1I	GRCGYC	2 cut(s)	117, 2390
Hin6I	GCGC	7 cut(s)	37, 88, 189, 200, 277, 311, 471
HinP1I	GCGC	7 cut(s)	37, 88, 189, 200, 277, 311, 471
HinfI	GANTC	8 cut(s)	176, 373, 796, 910, 1217, 1520, 1555, 1915
HpaII	CCGG	7 cut(s)	351, 368, 431, 500, 606, 2301, 2486
HphI	GGTGA	5 cut(s)	382, 595, 654, 917, 1529
Hpy166II	GTNNAC	2 cut(s)	672, 2117
Hpy8I	GTNNAC	2 cut(s)	672, 2117
HpyAV	CCTTC	8 cut(s)	24, 28, 355, 506, 1123, 1682, 1768, 2238
HpyCH4III	ACNGT	6 cut(s)	239, 283, 461, 614, 748, 1842
HpyCH4IV	ACGT	3 cut(s)	1063, 1375, 2155
HpyF3I	CTNAG	7 cut(s)	652, 678, 861, 1647, 2212, 2459, 2474
HpySE526I	ACGT	3 cut(s)	1063, 1375, 2155
Hsp92I	GRCGYC	2 cut(s)	117, 2390
HspAI	GCGC	7 cut(s)	37, 88, 189, 200, 277, 311, 471
KflI	GGGWCCC	1 cut(s)	64
Kpn2I	TCCGGA	1 cut(s)	2300
KroI	GCCGGC	2 cut(s)	350, 499
KroNI	GCCGGC	2 cut(s)	352, 501
Ksp22I	TGATCA	5 cut(s)	817, 951, 1261, 1456, 1996
KspI	CCGCGG	2 cut(s)	126, 520
LmnI	GCTCC	6 cut(s)	249, 895, 2062, 2183, 2203, 2419
LweI	GCATC	4 cut(s)	626, 1413, 1622, 2370
MaeI	CTAG	5 cut(s)	186, 474, 1511, 2363, 2493
MaeII	ACGT	3 cut(s)	1063, 1375, 2155
MaeIII	GTNAC	2 cut(s)	490, 1122
MbiI	CCGCTC	1 cut(s)	328
MflI	RGATCY	1 cut(s)	1499
MhlI	GDGCHC	3 cut(s)	246, 368, 1624
MlsI	TGGCCA	1 cut(s)	2237
MluNI	TGGCCA	1 cut(s)	2237
MlyI	GAGTC	4 cut(s)	170, 382, 790, 1909
MmeI	TCCRAC	4 cut(s)	204, 366, 429, 1461
Mox20I	TGGCCA	1 cut(s)	2237
Mph1103I	ATGCAT	2 cut(s)	1361, 1728
MreI	CGCCGGCG	2 cut(s)	350, 499
MroI	TCCGGA	1 cut(s)	2300
MroNI	GCCGGC	2 cut(s)	350, 499
MscI	TGGCCA	1 cut(s)	2237
MseI	TTAA	8 cut(s)	342, 767, 887, 981, 1938, 2072, 2208, 2430
Msp20I	TGGCCA	1 cut(s)	2237
MspA1I	CMGCKG	6 cut(s)	125, 131, 519, 926, 989, 1967
MspCI	CTTAAG	2 cut(s)	886, 980
MspI	CCGG	7 cut(s)	351, 368, 431, 500, 606, 2301, 2486
MspR9I	CCNGG	5 cut(s)	368, 431, 1571, 2439, 2487
MvaI	CCWGG	2 cut(s)	1571, 2439
MvnI	CGCG	6 cut(s)	39, 88, 90, 125, 311, 519
NaeI	GCCGGC	2 cut(s)	352, 501
NciI	CCSGG	3 cut(s)	368, 431, 2487
NcoI	CCATGG	2 cut(s)	1290, 2232
NgoMIV	GCCGGC	2 cut(s)	350, 499
NmuCI	GTSAC	1 cut(s)	1122
NotI	GCGGCCGC	1 cut(s)	126
NsbI	TGCGCA	1 cut(s)	278
NsiI	ATGCAT	2 cut(s)	1361, 1728
NspI	RCATGY	4 cut(s)	691, 1334, 1726, 2338
NspV	TTCGAA	1 cut(s)	1057
PaeI	GCATGC	1 cut(s)	1726
PagI	TCATGA	2 cut(s)	1015, 1999
PaqCI	CACCTGC	1 cut(s)	2207
PasI	CCCWGGG	1 cut(s)	2438
PceI	AGGCCT	3 cut(s)	416, 1783, 2479
PcsI	WCGNNNNNNNCGW	6 cut(s)	99, 102, 108, 111, 177, 500
PdiI	GCCGGC	2 cut(s)	352, 501
PfeI	GAWTC	4 cut(s)	910, 1217, 1520, 1555
PflMI	CCANNNNNTGG	1 cut(s)	2444
PleI	GAGTC	4 cut(s)	170, 381, 790, 1909
PpsI	GAGTC	4 cut(s)	170, 381, 790, 1909
PpuMI	RGGWCCY	2 cut(s)	64, 229
PshAI	GACNNNNGTC	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	999
Psp5II	RGGWCCY	2 cut(s)	64, 229
Psp6I	CCWGG	2 cut(s)	1569, 2437
PspFI	CCCAGC	1 cut(s)	2286
PspGI	CCWGG	2 cut(s)	1569, 2437
PspOMI	GGGCCC	1 cut(s)	364
PspPPI	RGGWCCY	2 cut(s)	64, 229
PstI	CTGCAG	1 cut(s)	1930
PstNI	CAGNNNCTG	4 cut(s)	752, 1925, 1970, 2444
PsuI	RGATCY	1 cut(s)	1499
PvuII	CAGCTG	3 cut(s)	926, 989, 1967
RsaI	GTAC	8 cut(s)	686, 719, 1143, 1209, 1339, 1923, 2158, 2491
RsaNI	GTAC	8 cut(s)	685, 718, 1142, 1208, 1338, 1922, 2157, 2490
SacII	CCGCGG	2 cut(s)	126, 520
SaqAI	TTAA	8 cut(s)	342, 767, 887, 981, 1938, 2072, 2208, 2430
SchI	GAGTC	4 cut(s)	170, 382, 790, 1909
ScrFI	CCNGG	5 cut(s)	368, 431, 1571, 2439, 2487
SduI	GDGCHC	3 cut(s)	246, 368, 1624
SfaNI	GCATC	4 cut(s)	626, 1413, 1622, 2370
SfcI	CTRYAG	2 cut(s)	610, 1926
Sfr303I	CCGCGG	2 cut(s)	126, 520
SfuI	TTCGAA	1 cut(s)	1057
SgrAI	CRCCGGYG	2 cut(s)	350, 499
SgrBI	CCGCGG	2 cut(s)	126, 520
SinI	GGWCC	5 cut(s)	64, 229, 457, 2225, 2372
SmlI	CTYRAG	3 cut(s)	886, 980, 1283
SmoI	CTYRAG	3 cut(s)	886, 980, 1283
SphI	GCATGC	1 cut(s)	1726
SseBI	AGGCCT	3 cut(s)	416, 1783, 2479
SspI	AATATT	3 cut(s)	1408, 1753, 2035
SspMI	CTAG	5 cut(s)	186, 474, 1511, 2363, 2493
StuI	AGGCCT	3 cut(s)	416, 1783, 2479
StyD4I	CCNGG	5 cut(s)	366, 429, 1569, 2437, 2485
StyI	CCWWGG	5 cut(s)	866, 1290, 1632, 2232, 2385
TaaI	ACNGT	6 cut(s)	239, 283, 461, 614, 748, 1842
TaiI	ACGT	3 cut(s)	1066, 1378, 2158
TaqI	TCGA	7 cut(s)	165, 234, 324, 620, 799, 938, 1057
TaqII	GACCGA	2 cut(s)	239, 2389
TatI	WGTACW	3 cut(s)	684, 717, 1141
TfiI	GAWTC	4 cut(s)	910, 1217, 1520, 1555
Tru1I	TTAA	8 cut(s)	342, 767, 887, 981, 1938, 2072, 2208, 2430
Tru9I	TTAA	8 cut(s)	342, 767, 887, 981, 1938, 2072, 2208, 2430
TscAI	CASTG	4 cut(s)	619, 827, 1114, 1644
TseFI	GTSAC	1 cut(s)	1122
Tsp45I	GTSAC	1 cut(s)	1122
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	4 cut(s)	619, 827, 1114, 1644
Van91I	CCANNNNNTGG	1 cut(s)	2444
Vha464I	CTTAAG	2 cut(s)	886, 980
VpaK11BI	GGWCC	5 cut(s)	64, 229, 457, 2225, 2372
XagI	CCTNNNNNAGG	1 cut(s)	886
XapI	RAATTY	7 cut(s)	956, 1053, 1489, 1546, 1759, 1789, 2013
XceI	RCATGY	4 cut(s)	691, 1334, 1726, 2338
XspI	CTAG	5 cut(s)	186, 474, 1511, 2363, 2493
Zsp2I	ATGCAT	2 cut(s)	1361, 1728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.