Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Reverse (-)

11931287 .. 11938586

Gene Structure 7300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

ATGCCAGCTTCCCCTTCCTTCCCATCTTCAGACGGGCGCGGCAAATGGAGGAAGCGAAAGCGGGACCCCCAAGTTCGCCGCCGCCCGCGCGACGACGACGACGACGAGGACGACGACGCCGCCGCGGCCGCTGCCGACGACAACAACAACAACAACGACCTCGACCACGAAGACTCCGACCCTAGCGCCGCCGCAGCGCCCGATCCCGCCCCGCACGAGACCGAGGTCCTCGACGGTGGGCTCCGCCACAACGATTTCCCTCCCGTCGTTTTGCGCACCGTGAATAGGCCCCACTCCTCGGTTCTCGCGCTTGTGGCGGTCGAGCGGGCCAACCACATTAACTCCGCCGGCGACGGGAAGGGCCCGGTGAGTCCTCTGGTGTTGGAGAATGTGTCGCACGGCCAGCTTCAGGCCTTGTCCGCCGTCCCGGCCGATTGTCCGTCGTTGGATCAGGACCGTCCAGATGGCGCTAGTTCGGCTTATGTCGTTACGCCGCCGGCGATTATGGAAGGCCGCGGCGTTGTGAAGCGATTGGTTTTCACCGGCTACAGTGCATCGACTGGAGAGACAGGTGGTGCCACATTTTTCTCAGGAAAATCACCAGAGTTTACTCCTGAGATGTACATGCAAAGTAGGAATGAAATTGTTGCCAAGTACATGGAAAACCCAGAGAAGAGGCTTACAGTTTCTGATTGCACAAAATTAACAAGCCATCTAAATACTGAAGATTTGACTCGAATAGTTCGGTTTCTTGATCACTGGGGAATTATCAATTACTCTGCTGCCGCACCAAGTCCTGAGCCTTGGAATGGTAATTCCTACTTAAGGGAGGAGCAAAATGGTGAGATTCATGTTCCATCAGCTGCGTTGAAGTCGATTGATAGTCTGATCAAATTTGACAAGCCCAGATGTAGGCTTAAGGCAGCTGATGTTTATAAGTCATTGTCCTGTCATGATGACGATGATGACACCTCTGATTTGGACAACAGAATTCGAAAACGTCTATGTGAAAATCATTGCAATTATTGTTCTTGTTCTCTTCCCAGTGTATGCTATCAGTCACAGAAGGAGGTTGATGTACTGCTCTGCTCTGACTGCTTCCATGAGGGAAGATATGTTGTGGGCCATTCAAGCATAGATTTCATACGAGTGGATTCAACAAAAGATTATGGCGATCCAGATGGGGAAAATTGGACTGATCAAGAAACCCTACTGCTGCTTGAGGCCATGGAAATCTATAATGAGAACTGGAATGAAATTGCCGAGCATGTTGGTACAAAGTCAAAAGCACAATGCATACTTCATTTTCTACGTTTGCCTGTGGAGGATGGCCTGCTGGAAAATATTGAAGTTCCAAAGATGCCTCTGTCATCCAACTCGTCAAATAGAGATGATCATGGCGGATTTCATTCAACTTCAAATGGGAATTCAGCAGGATCCTGCCTACTAGATGGTGATTCTGAAAGCAGGTTCCCTTTTGCAAATTCTGGGAATCCAGTCATGTCCCTGGTTGCCTTTCTGGCCTCTTCTGTTGGGCCAAGAGTTGCTGCATCTTGTGCCCATGCAGCCTTGGCAGTGTTGTCTGAGGACAATGGCTTACCTGCTTCTGGAAGTAATTTGCAGGAAGGATCAGGAGGACATAGGATGAACTTGGAGAGCATGCATGGTCAAGGTGGCACTCATAAAAATATTGCAAATTCAGTTCAGCAGAAGGGTAGGCCTTTGAATTTTCATGTTCTTTTCATATTCATTCCCTCTGTCATCCTTTCTCACTTACAGTTCTTCATGGATCAAACTTCAGATGAGAAATCAGCAGGACAAGGTTCTTGGGGTAAAAATGAGGCAGGGGCGACTCCAGTACCTGCAGAAAAAGTTAAAGCTGCTGCCAAAGCTGGCCTTGCAGCTGCTGCAATAAAAGCAAAATTGTTTGCTGATCATGAAGAACGGGAAATTCAGAGGTTATCTGCTAATATTGTAAATCATCAGTTGAAGAGATTGGAGCTGAAGTTAAAGCAGTTTGCAGAAGTGGAAACTTATCTAATGAAAGAATGTGAACAAGTGGAGAAGACAAGGCAGAGGATGGTTGCCGAACGTACCCGTCTTATATCAACTCGGTTTGGAGCTCCTGGAGTTGCTCCACCCATTAACTTAGCAGGTGTTGGTCCTTCCATGGCCAATAATAATTCAAACAATAGGCAACAAATTATGCCATCTTCGGCTTCCCAGCCAAGCGTATCCGGATACAGCAACAACCAACCAGTCCATTCTCACATGCCTTTCATGCCACAACAATCAATGCTAGGATTGGGACCGAGGATGCCCTTGGCGTCCATACAAGCCTCCTCATCAGCTCCAAATGCCATGTTTAATTCCCCAGGGACTGGTCGGCCAACTCTAAGTCATCCAATGCTGAGGCCTGTGCCGGGTACTAGCTCTGGTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

815

Amino Acids

88.39

Weight (kDa)

5.66

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	194 - 259	1.2e-14	SWIRM domain
Myb_DNA-binding	PF00249	396 - 438	4.1e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	398 - 440	3.8e-08	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	631 - 705	3.8e-25	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
AarI	CACCTGC	1 cut(s)	2144
Acc16I	TGCGCA	1 cut(s)	275
Acc36I	ACCTGC	4 cut(s)	1458, 1609, 1870, 2144
AccB1I	GGYRCC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	2381
AccBSI	CCGCTC	1 cut(s)	325
AccII	CGCG	6 cut(s)	39, 88, 90, 125, 308, 516
AccIII	TCCGGA	1 cut(s)	2237
AclWI	GGATC	7 cut(s)	197, 456, 1169, 1431, 1444, 1636, 1797
AcoI	YGGCCR	5 cut(s)	126, 400, 429, 2172, 2387
AcsI	RAATTY	7 cut(s)	893, 990, 1426, 1483, 1696, 1726, 1950
AcuI	CTGAAG	5 cut(s)	12, 392, 744, 1782, 2024
AcyI	GRCGYC	2 cut(s)	117, 2327
AfaI	GTAC	7 cut(s)	623, 656, 1080, 1276, 1860, 2095, 2428
AflII	CTTAAG	2 cut(s)	823, 917
AgsI	TTSAA	9 cut(s)	871, 1131, 1158, 1349, 1413, 1419, 1726, 1990, 2187
AjnI	CCWGG	3 cut(s)	1506, 2125, 2374
Alw21I	GWGCWC	1 cut(s)	2125
Alw26I	GTCTC	2 cut(s)	212, 560
AlwI	GGATC	7 cut(s)	197, 456, 1169, 1431, 1444, 1636, 1797
AlwNI	CAGNNNCTG	4 cut(s)	689, 1862, 1907, 2381
Aor13HI	TCCGGA	1 cut(s)	2237
ApaI	GGGCCC	1 cut(s)	365
ApoI	RAATTY	7 cut(s)	893, 990, 1426, 1483, 1696, 1726, 1950
AspLEI	GCGC	7 cut(s)	39, 90, 188, 199, 276, 310, 470
AsuC2I	CCSGG	3 cut(s)	365, 428, 2424
AsuHPI	GGTGA	5 cut(s)	379, 532, 591, 854, 1466
AsuII	TTCGAA	1 cut(s)	994
AvaII	GGWCC	5 cut(s)	64, 226, 454, 2162, 2309
BaeGI	GKGCMC	2 cut(s)	365, 1561
BaeI	ACNNNNGTAYC	2 cut(s)	1842, 1875
BalI	TGGCCA	1 cut(s)	2174
BamHI	GGATCC	1 cut(s)	1436
BanI	GGYRCC	1 cut(s)	575
BanII	GRGCYC	3 cut(s)	243, 365, 2125
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	177, 2072
Bbv12I	GWGCWC	1 cut(s)	2125
BbvCI	CCTCAGC	1 cut(s)	2411
BccI	CCATC	9 cut(s)	31, 458, 720, 865, 1175, 1322, 1445, 2074, 2218
BceAI	ACGGC	2 cut(s)	407, 415
BciT130I	CCWGG	3 cut(s)	1508, 2127, 2376
BciVI	GTATCC	2 cut(s)	2234, 2245
BclI	TGATCA	5 cut(s)	754, 888, 1198, 1393, 1933
BcnI	CCSGG	3 cut(s)	365, 428, 2424
BcoDI	GTCTC	2 cut(s)	212, 560
BfaI	CTAG	5 cut(s)	183, 471, 1448, 2300, 2430
BfmI	CTRYAG	2 cut(s)	547, 1863
BfoI	RGCGCY	3 cut(s)	189, 200, 471
BfrI	CTTAAG	2 cut(s)	823, 917
BfuAI	ACCTGC	4 cut(s)	1458, 1609, 1870, 2144
BfuI	GTATCC	2 cut(s)	2234, 2245
BglI	GCCNNNNNGGC	3 cut(s)	125, 428, 1520
Bme1390I	CCNGG	6 cut(s)	365, 428, 1508, 2127, 2376, 2424
Bme18I	GGWCC	5 cut(s)	64, 226, 454, 2162, 2309
BmiI	GGNNCC	9 cut(s)	65, 66, 242, 290, 363, 577, 1438, 1472, 2310
BmrFI	CCNGG	6 cut(s)	365, 428, 1508, 2127, 2376, 2424
BmrI	ACTGGG	2 cut(s)	769, 1038
BmsI	GCATC	4 cut(s)	563, 1350, 1559, 2307
BmuI	ACTGGG	2 cut(s)	769, 1038
BoxI	GACNNNNGTC	1 cut(s)	224
BpiI	GAAGAC	2 cut(s)	177, 2072
BpmI	CTGGAG	3 cut(s)	582, 1839, 2148
Bpu10I	CCTNAGC	2 cut(s)	798, 2411
Bpu14I	TTCGAA	1 cut(s)	994
BpuEI	CTTGAG	1 cut(s)	1241
BpuMI	CCSGG	3 cut(s)	365, 428, 2424
BsaHI	GRCGYC	2 cut(s)	117, 2327
BsaI	GGTCTC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	2237
BsaXI	ACNNNNNCTCC	8 cut(s)	158, 188, 326, 356, 377, 407, 1991, 2021
Bse118I	RCCGGY	3 cut(s)	347, 496, 542
Bse1I	ACTGG	8 cut(s)	565, 764, 1044, 1253, 1496, 1856, 2258, 2386
Bse3DI	GCAATG	1 cut(s)	1015
BseAI	TCCGGA	1 cut(s)	2237
BseBI	CCWGG	3 cut(s)	1508, 2127, 2376
BseGI	GGATG	7 cut(s)	1333, 1370, 1650, 1761, 2085, 2322, 2401
BseMI	GCAATG	1 cut(s)	1015
BseMII	CTCAG	5 cut(s)	603, 606, 789, 1575, 2402
BseNI	ACTGG	8 cut(s)	565, 764, 1044, 1253, 1496, 1856, 2258, 2386
BseRI	GAGGAG	3 cut(s)	286, 845, 2332
BseSI	GKGCMC	2 cut(s)	365, 1561
BseX3I	CGGCCG	2 cut(s)	126, 429
BseYI	CCCAGC	1 cut(s)	2223
Bsh1236I	CGCG	6 cut(s)	39, 88, 90, 125, 308, 516
Bsh1285I	CGRYCG	3 cut(s)	129, 321, 432
BshNI	GGYRCC	1 cut(s)	575
BsiEI	CGRYCG	3 cut(s)	129, 321, 432
BsiHKAI	GWGCWC	1 cut(s)	2125
BsiSI	CCGG	7 cut(s)	348, 365, 428, 497, 543, 2238, 2423
BslFI	GGGAC	5 cut(s)	77, 410, 1489, 2322, 2392
BsmAI	GTCTC	2 cut(s)	212, 560
BsmFI	GGGAC	5 cut(s)	77, 410, 1489, 2322, 2392
Bso31I	GGTCTC	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	994
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	4 cut(s)	243, 365, 1561, 2125
Bsp13I	TCCGGA	1 cut(s)	2237
Bsp1407I	TGTACA	1 cut(s)	621
Bsp19I	CCATGG	2 cut(s)	1227, 2169
BspCNI	CTCAG	5 cut(s)	602, 607, 790, 1576, 2403
BspEI	TCCGGA	1 cut(s)	2237
BspFNI	CGCG	6 cut(s)	39, 88, 90, 125, 308, 516
BspHI	TCATGA	2 cut(s)	952, 1936
BspLI	GGNNCC	9 cut(s)	65, 66, 242, 290, 363, 577, 1438, 1472, 2310
BspMAI	CTGCAG	1 cut(s)	1867
BspMI	ACCTGC	4 cut(s)	1458, 1609, 1870, 2144
BspPI	GGATC	7 cut(s)	197, 456, 1169, 1431, 1444, 1636, 1797
BspT104I	TTCGAA	1 cut(s)	994
BspT107I	GGYRCC	1 cut(s)	575
BspTI	CTTAAG	2 cut(s)	823, 917
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	1015
BsrFI	RCCGGY	3 cut(s)	347, 496, 542
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	8 cut(s)	565, 764, 1044, 1253, 1496, 1856, 2258, 2386
BssAI	RCCGGY	3 cut(s)	347, 496, 542
BssNI	GRCGYC	2 cut(s)	117, 2327
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	5 cut(s)	803, 1227, 1569, 2169, 2322
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	3 cut(s)	1508, 2127, 2376
Bst4CI	ACNGT	6 cut(s)	236, 280, 458, 551, 685, 1779
Bst6I	CTCTTC	4 cut(s)	668, 1044, 1531, 1985
BstACI	GRCGYC	2 cut(s)	117, 2327
BstAFI	CTTAAG	2 cut(s)	823, 917
BstAPI	GCANNNNNTGC	2 cut(s)	1556, 1907
BstAUI	TGTACA	1 cut(s)	621
BstBI	TTCGAA	1 cut(s)	994
BstC8I	GCNNGC	9 cut(s)	6, 86, 327, 349, 404, 498, 1334, 1661, 1894
BstDEI	CTNAG	7 cut(s)	589, 615, 798, 1584, 2149, 2396, 2411
BstDSI	CCRYGG	4 cut(s)	123, 514, 1227, 2169
BstENI	CCTNNNNNAGG	1 cut(s)	823
BstF5I	GGATG	7 cut(s)	1333, 1370, 1650, 1761, 2085, 2322, 2401
BstFNI	CGCG	6 cut(s)	39, 88, 90, 125, 308, 516
BstH2I	RGCGCY	3 cut(s)	189, 200, 471
BstHHI	GCGC	7 cut(s)	39, 90, 188, 199, 276, 310, 470
BstMAI	GTCTC	2 cut(s)	212, 560
BstMCI	CGRYCG	3 cut(s)	129, 321, 432
BstNI	CCWGG	3 cut(s)	1508, 2127, 2376
BstNSI	RCATGY	4 cut(s)	628, 1271, 1663, 2275
BstPAI	GACNNNNGTC	1 cut(s)	224
BstSCI	CCNGG	6 cut(s)	363, 426, 1506, 2125, 2374, 2422
BstSFI	CTRYAG	2 cut(s)	547, 1863
BstSLI	GKGCMC	2 cut(s)	365, 1561
BstUI	CGCG	6 cut(s)	39, 88, 90, 125, 308, 516
BstV2I	GAAGAC	2 cut(s)	177, 2072
BstX2I	RGATCY	1 cut(s)	1436
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	1436
BstZI	CGGCCG	2 cut(s)	126, 429
BsuI	GTATCC	2 cut(s)	2234, 2245
BtgI	CCRYGG	4 cut(s)	123, 514, 1227, 2169
BtsCI	GGATG	7 cut(s)	1333, 1370, 1650, 1761, 2085, 2322, 2401
BtsI	GCAGTG	1 cut(s)	1581
BtsIMutI	CAGTG	4 cut(s)	556, 757, 1051, 1581
BveI	ACCTGC	4 cut(s)	1458, 1609, 1870, 2144
Cac8I	GCNNGC	9 cut(s)	6, 86, 327, 349, 404, 498, 1334, 1661, 1894
CaiI	CAGNNNCTG	4 cut(s)	689, 1862, 1907, 2381
CciI	TCATGA	2 cut(s)	952, 1936
CciNI	GCGGCCGC	1 cut(s)	126
CfoI	GCGC	7 cut(s)	39, 90, 188, 199, 276, 310, 470
Cfr10I	RCCGGY	3 cut(s)	347, 496, 542
Cfr42I	CCGCGG	2 cut(s)	126, 517
CseI	GACGC	2 cut(s)	125, 2316
Csp6I	GTAC	7 cut(s)	622, 655, 1079, 1275, 1859, 2094, 2427
CviQI	GTAC	7 cut(s)	622, 655, 1079, 1275, 1859, 2094, 2427
DdeI	CTNAG	7 cut(s)	589, 615, 798, 1584, 2149, 2396, 2411
EaeI	YGGCCR	5 cut(s)	126, 400, 429, 2172, 2387
EagI	CGGCCG	2 cut(s)	126, 429
Eam1104I	CTCTTC	4 cut(s)	668, 1044, 1531, 1985
EarI	CTCTTC	4 cut(s)	668, 1044, 1531, 1985
EciI	GGCGGA	4 cut(s)	233, 334, 409, 1416
Ecl136II	GAGCTC	1 cut(s)	2123
EclXI	CGGCCG	2 cut(s)	126, 429
Eco130I	CCWWGG	5 cut(s)	803, 1227, 1569, 2169, 2322
Eco147I	AGGCCT	3 cut(s)	413, 1720, 2416
Eco24I	GRGCYC	3 cut(s)	243, 365, 2125
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	5 cut(s)	64, 226, 454, 2162, 2309
Eco52I	CGGCCG	2 cut(s)	126, 429
Eco53kI	GAGCTC	1 cut(s)	2123
Eco57I	CTGAAG	5 cut(s)	12, 392, 744, 1782, 2024
EcoICRI	GAGCTC	1 cut(s)	2123
EcoNI	CCTNNNNNAGG	1 cut(s)	823
EcoO109I	RGGNCCY	4 cut(s)	64, 226, 288, 361
EcoRI	GAATTC	2 cut(s)	990, 1426
EcoRII	CCWGG	3 cut(s)	1506, 2125, 2374
EcoT14I	CCWWGG	5 cut(s)	803, 1227, 1569, 2169, 2322
EcoT22I	ATGCAT	2 cut(s)	1298, 1665
EcoT38I	GRGCYC	3 cut(s)	243, 365, 2125
ErhI	CCWWGG	5 cut(s)	803, 1227, 1569, 2169, 2322
FalI	AAGNNNNNCTT	2 cut(s)	1881, 1913
FaqI	GGGAC	5 cut(s)	77, 410, 1489, 2322, 2392
FauI	CCCGC	5 cut(s)	54, 93, 214, 219, 318
FbaI	TGATCA	5 cut(s)	754, 888, 1198, 1393, 1933
FokI	GGATG	7 cut(s)	1340, 1357, 1657, 1748, 2092, 2329, 2388
FriOI	GRGCYC	3 cut(s)	243, 365, 2125
FspBI	CTAG	5 cut(s)	183, 471, 1448, 2300, 2430
FspI	TGCGCA	1 cut(s)	275
GlaI	GCGC	7 cut(s)	38, 89, 187, 198, 275, 309, 469
GsaI	CCCAGC	1 cut(s)	2227
GsuI	CTGGAG	3 cut(s)	582, 1839, 2148
HaeII	RGCGCY	3 cut(s)	189, 200, 471
HapII	CCGG	7 cut(s)	348, 365, 428, 497, 543, 2238, 2423
HgaI	GACGC	2 cut(s)	125, 2316
HhaI	GCGC	7 cut(s)	39, 90, 188, 199, 276, 310, 470
Hin1I	GRCGYC	2 cut(s)	117, 2327
Hin6I	GCGC	7 cut(s)	37, 88, 186, 197, 274, 308, 468
HinP1I	GCGC	7 cut(s)	37, 88, 186, 197, 274, 308, 468
HinfI	GANTC	8 cut(s)	173, 370, 733, 847, 1154, 1457, 1492, 1852
HpaII	CCGG	7 cut(s)	348, 365, 428, 497, 543, 2238, 2423
HphI	GGTGA	5 cut(s)	379, 532, 591, 854, 1466
Hpy166II	GTNNAC	2 cut(s)	609, 2054
Hpy8I	GTNNAC	2 cut(s)	609, 2054
HpyAV	CCTTC	8 cut(s)	24, 28, 352, 503, 1060, 1619, 1705, 2175
HpyCH4III	ACNGT	6 cut(s)	236, 280, 458, 551, 685, 1779
HpyCH4IV	ACGT	3 cut(s)	1000, 1312, 2092
HpyF3I	CTNAG	7 cut(s)	589, 615, 798, 1584, 2149, 2396, 2411
HpySE526I	ACGT	3 cut(s)	1000, 1312, 2092
Hsp92I	GRCGYC	2 cut(s)	117, 2327
HspAI	GCGC	7 cut(s)	37, 88, 186, 197, 274, 308, 468
KflI	GGGWCCC	1 cut(s)	64
Kpn2I	TCCGGA	1 cut(s)	2237
KroI	GCCGGC	2 cut(s)	347, 496
KroNI	GCCGGC	2 cut(s)	349, 498
Ksp22I	TGATCA	5 cut(s)	754, 888, 1198, 1393, 1933
KspI	CCGCGG	2 cut(s)	126, 517
LmnI	GCTCC	7 cut(s)	246, 832, 1999, 2120, 2128, 2140, 2356
LweI	GCATC	4 cut(s)	563, 1350, 1559, 2307
MaeI	CTAG	5 cut(s)	183, 471, 1448, 2300, 2430
MaeII	ACGT	3 cut(s)	1000, 1312, 2092
MaeIII	GTNAC	2 cut(s)	487, 1059
MbiI	CCGCTC	1 cut(s)	325
MflI	RGATCY	1 cut(s)	1436
MhlI	GDGCHC	4 cut(s)	243, 365, 1561, 2125
MlsI	TGGCCA	1 cut(s)	2174
MluNI	TGGCCA	1 cut(s)	2174
MlyI	GAGTC	4 cut(s)	167, 379, 727, 1846
MmeI	TCCRAC	4 cut(s)	201, 363, 426, 1398
Mox20I	TGGCCA	1 cut(s)	2174
Mph1103I	ATGCAT	2 cut(s)	1298, 1665
MreI	CGCCGGCG	2 cut(s)	347, 496
MroI	TCCGGA	1 cut(s)	2237
MroNI	GCCGGC	2 cut(s)	347, 496
MscI	TGGCCA	1 cut(s)	2174
MseI	TTAA	8 cut(s)	339, 704, 824, 918, 1875, 2009, 2145, 2367
MslI	CAYNNNNRTG	1 cut(s)	1148
Msp20I	TGGCCA	1 cut(s)	2174
MspA1I	CMGCKG	6 cut(s)	125, 131, 516, 863, 926, 1904
MspCI	CTTAAG	2 cut(s)	823, 917
MspI	CCGG	7 cut(s)	348, 365, 428, 497, 543, 2238, 2423
MspR9I	CCNGG	6 cut(s)	365, 428, 1508, 2127, 2376, 2424
MvaI	CCWGG	3 cut(s)	1508, 2127, 2376
MvnI	CGCG	6 cut(s)	39, 88, 90, 125, 308, 516
NaeI	GCCGGC	2 cut(s)	349, 498
NciI	CCSGG	3 cut(s)	365, 428, 2424
NcoI	CCATGG	2 cut(s)	1227, 2169
NgoMIV	GCCGGC	2 cut(s)	347, 496
NlaIV	GGNNCC	9 cut(s)	65, 66, 242, 290, 363, 577, 1438, 1472, 2310
NmeAIII	GCCGAG	1 cut(s)	1288
NmuCI	GTSAC	1 cut(s)	1059
NotI	GCGGCCGC	1 cut(s)	126
NsbI	TGCGCA	1 cut(s)	275
NsiI	ATGCAT	2 cut(s)	1298, 1665
NspI	RCATGY	4 cut(s)	628, 1271, 1663, 2275
NspV	TTCGAA	1 cut(s)	994
PaeI	GCATGC	1 cut(s)	1663
PagI	TCATGA	2 cut(s)	952, 1936
PaqCI	CACCTGC	1 cut(s)	2144
PasI	CCCWGGG	1 cut(s)	2375
PceI	AGGCCT	3 cut(s)	413, 1720, 2416
PcsI	WCGNNNNNNNCGW	6 cut(s)	99, 102, 108, 111, 174, 497
PdiI	GCCGGC	2 cut(s)	349, 498
PfeI	GAWTC	4 cut(s)	847, 1154, 1457, 1492
PflMI	CCANNNNNTGG	1 cut(s)	2381
PfoI	TCCNGGA	1 cut(s)	2125
PleI	GAGTC	4 cut(s)	167, 378, 727, 1846
PpsI	GAGTC	4 cut(s)	167, 378, 727, 1846
PpuMI	RGGWCCY	2 cut(s)	64, 226
PshAI	GACNNNNGTC	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	936
Psp124BI	GAGCTC	1 cut(s)	2125
Psp5II	RGGWCCY	2 cut(s)	64, 226
Psp6I	CCWGG	3 cut(s)	1506, 2125, 2374
PspFI	CCCAGC	1 cut(s)	2223
PspGI	CCWGG	3 cut(s)	1506, 2125, 2374
PspN4I	GGNNCC	9 cut(s)	65, 66, 242, 290, 363, 577, 1438, 1472, 2310
PspOMI	GGGCCC	1 cut(s)	361
PspPPI	RGGWCCY	2 cut(s)	64, 226
PstI	CTGCAG	1 cut(s)	1867
PstNI	CAGNNNCTG	4 cut(s)	689, 1862, 1907, 2381
PsuI	RGATCY	1 cut(s)	1436
PvuII	CAGCTG	3 cut(s)	863, 926, 1904
RsaI	GTAC	7 cut(s)	623, 656, 1080, 1276, 1860, 2095, 2428
RsaNI	GTAC	7 cut(s)	622, 655, 1079, 1275, 1859, 2094, 2427
RseI	CAYNNNNRTG	1 cut(s)	1148
SacI	GAGCTC	1 cut(s)	2125
SacII	CCGCGG	2 cut(s)	126, 517
SaqAI	TTAA	8 cut(s)	339, 704, 824, 918, 1875, 2009, 2145, 2367
SchI	GAGTC	4 cut(s)	167, 379, 727, 1846
ScrFI	CCNGG	6 cut(s)	365, 428, 1508, 2127, 2376, 2424
SduI	GDGCHC	4 cut(s)	243, 365, 1561, 2125
SfaNI	GCATC	4 cut(s)	563, 1350, 1559, 2307
SfcI	CTRYAG	2 cut(s)	547, 1863
Sfr303I	CCGCGG	2 cut(s)	126, 517
SfuI	TTCGAA	1 cut(s)	994
SgrAI	CRCCGGYG	2 cut(s)	347, 496
SgrBI	CCGCGG	2 cut(s)	126, 517
SinI	GGWCC	5 cut(s)	64, 226, 454, 2162, 2309
SmiMI	CAYNNNNRTG	1 cut(s)	1148
SmlI	CTYRAG	3 cut(s)	823, 917, 1220
SmoI	CTYRAG	3 cut(s)	823, 917, 1220
SphI	GCATGC	1 cut(s)	1663
SseBI	AGGCCT	3 cut(s)	413, 1720, 2416
SspI	AATATT	3 cut(s)	1345, 1690, 1972
SspMI	CTAG	5 cut(s)	183, 471, 1448, 2300, 2430
SstI	GAGCTC	1 cut(s)	2125
StuI	AGGCCT	3 cut(s)	413, 1720, 2416
StyD4I	CCNGG	6 cut(s)	363, 426, 1506, 2125, 2374, 2422
StyI	CCWWGG	5 cut(s)	803, 1227, 1569, 2169, 2322
TaaI	ACNGT	6 cut(s)	236, 280, 458, 551, 685, 1779
TaiI	ACGT	3 cut(s)	1003, 1315, 2095
TaqI	TCGA	7 cut(s)	162, 231, 321, 557, 736, 875, 994
TaqII	GACCGA	2 cut(s)	236, 2326
TatI	WGTACW	3 cut(s)	621, 654, 1078
TfiI	GAWTC	4 cut(s)	847, 1154, 1457, 1492
Tru1I	TTAA	8 cut(s)	339, 704, 824, 918, 1875, 2009, 2145, 2367
Tru9I	TTAA	8 cut(s)	339, 704, 824, 918, 1875, 2009, 2145, 2367
TscAI	CASTG	4 cut(s)	556, 764, 1051, 1581
TseFI	GTSAC	1 cut(s)	1059
Tsp45I	GTSAC	1 cut(s)	1059
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	4 cut(s)	556, 764, 1051, 1581
Van91I	CCANNNNNTGG	1 cut(s)	2381
Vha464I	CTTAAG	2 cut(s)	823, 917
VpaK11BI	GGWCC	5 cut(s)	64, 226, 454, 2162, 2309
XagI	CCTNNNNNAGG	1 cut(s)	823
XapI	RAATTY	7 cut(s)	893, 990, 1426, 1483, 1696, 1726, 1950
XceI	RCATGY	4 cut(s)	628, 1271, 1663, 2275
XspI	CTAG	5 cut(s)	183, 471, 1448, 2300, 2430
Zsp2I	ATGCAT	2 cut(s)	1298, 1665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.