Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Reverse (-)

17027547 .. 17027954

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAAGAATGTGAACAAGTGGAGAAGACAAGGCAGAGGATGGTTGCCGAACGTACCCGTCTTAAATCAACTCGGTTTGGAGCTGCTGAAGTTGCTCCACCCATTAACTTAGCAGGTGTTGGTCCTTCCATGGCCAATAATAATTCAAACAATAGGCAACAAATTAAGCCATCTTCGGCTTCCCAGCCAAGCGTATCCGGATACAGCAACAACCAACCAGTCCATTCTCACATGCCTTTCATGCCACAACAATCAATGCTAGGATTGGGACCGAGGATGCCCTTGGCGTCCATACAAGCCTCCTCATCAGCTCCAAATGCCATGTTTAATTCCCCAGGGACTGGTCGGCCAACTCTAAGTCATCCAATGCTGAGGCCTGTGCCGGGTACTAGCTCTGGTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

135

Amino Acids

14.34

Weight (kDa)

11.22

Isoelectric Point (pI)

59.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccIII	TCCGGA	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	132, 347
AcuI	CTGAAG	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	287
AfaI	GTAC	2 cut(s)	55, 388
AfiI	CCNNNNNNNGG	2 cut(s)	341, 383
AgsI	TTSAA	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	3 cut(s)	83, 311, 393
AluI	AGCT	3 cut(s)	83, 311, 393
AlwNI	CAGNNNCTG	1 cut(s)	341
Aor13HI	TCCGGA	1 cut(s)	197
AoxI	GGCC	3 cut(s)	132, 347, 374
ApeKI	GCWGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	122, 269
AsuC2I	CCSGG	1 cut(s)	384
AvaII	GGWCC	2 cut(s)	122, 269
BalI	TGGCCA	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	34, 178
BciT130I	CCWGG	1 cut(s)	336
BciVI	GTATCC	2 cut(s)	194, 205
BcnI	CCSGG	1 cut(s)	384
BfaI	CTAG	2 cut(s)	260, 390
BfuAI	ACCTGC	1 cut(s)	104
BfuI	GTATCC	2 cut(s)	194, 205
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	336, 384
Bme18I	GGWCC	2 cut(s)	122, 269
BmgT120I	GGNCC	2 cut(s)	122, 269
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	2 cut(s)	336, 384
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	5 cut(s)	129, 272, 282, 334, 335
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 383
Bse1I	ACTGG	2 cut(s)	218, 346
BseAI	TCCGGA	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	5 cut(s)	129, 272, 282, 334, 335
BseGI	GGATG	3 cut(s)	45, 282, 361
BseLI	CCNNNNNNNGG	2 cut(s)	341, 383
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	218, 346
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	183
BshFI	GGCC	3 cut(s)	134, 349, 376
BsiSI	CCGG	2 cut(s)	198, 383
BslFI	GGGAC	2 cut(s)	282, 352
BslI	CCNNNNNNNGG	2 cut(s)	341, 383
BsmFI	GGGAC	2 cut(s)	282, 352
BsnI	GGCC	3 cut(s)	134, 349, 376
Bsp13I	TCCGGA	1 cut(s)	197
Bsp19I	CCATGG	1 cut(s)	129
BspANI	GGCC	3 cut(s)	134, 349, 376
BspCNI	CTCAG	1 cut(s)	363
BspEI	TCCGGA	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	218, 346
BssECI	CCNNGG	5 cut(s)	129, 272, 282, 334, 335
BssNI	GRCGYC	1 cut(s)	287
BssT1I	CCWWGG	2 cut(s)	129, 282
Bst2UI	CCWGG	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	109, 356, 371
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	45, 282, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 241, 317
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	334, 382
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	32
BsuI	GTATCC	2 cut(s)	194, 205
BsuRI	GGCC	3 cut(s)	134, 349, 376
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	3 cut(s)	45, 282, 361
BveI	ACCTGC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	122, 269
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	54, 387
CviAII	CATG	4 cut(s)	130, 232, 241, 322
CviQI	GTAC	2 cut(s)	54, 387
DdeI	CTNAG	3 cut(s)	109, 356, 371
EaeI	YGGCCR	2 cut(s)	132, 347
Eco130I	CCWWGG	2 cut(s)	129, 282
Eco147I	AGGCCT	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	122, 269
Eco57I	CTGAAG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	129, 282
ErhI	CCWWGG	2 cut(s)	129, 282
FaeI	CATG	4 cut(s)	133, 235, 244, 325
FaiI	YATR	5 cut(s)	131, 233, 242, 293, 323
FaqI	GGGAC	2 cut(s)	282, 352
FatI	CATG	4 cut(s)	129, 231, 240, 321
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	3 cut(s)	52, 289, 348
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	2 cut(s)	260, 390
GluI	GCNGC	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	134, 349, 376
HapII	CCGG	2 cut(s)	198, 383
HgaI	GACGC	1 cut(s)	276
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	4 cut(s)	133, 235, 244, 325
HpaII	CCGG	2 cut(s)	198, 383
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 241, 317
HpyF3I	CTNAG	3 cut(s)	109, 356, 371
HpySE526I	ACGT	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	4 cut(s)	133, 235, 244, 325
Kpn2I	TCCGGA	1 cut(s)	197
LmnI	GCTCC	3 cut(s)	80, 100, 316
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	2 cut(s)	260, 390
MaeII	ACGT	1 cut(s)	52
MboII	GAAGA	2 cut(s)	37, 165
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	3 cut(s)	142, 162, 328
MluNI	TGGCCA	1 cut(s)	134
MnlI	CCTC	5 cut(s)	30, 267, 310, 313, 366
Mox20I	TGGCCA	1 cut(s)	134
MroI	TCCGGA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	4 cut(s)	63, 105, 165, 327
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	2 cut(s)	198, 383
MspR9I	CCNGG	2 cut(s)	336, 384
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	92, 241, 317
NciI	CCSGG	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	129
NlaIII	CATG	4 cut(s)	133, 235, 244, 325
NlaIV	GGNNCC	1 cut(s)	270
NspI	RCATGY	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	104
PasI	CCCWGGG	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	376
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	122, 269
PstNI	CAGNNNCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	55, 388
RsaNI	GTAC	2 cut(s)	54, 387
SaqAI	TTAA	4 cut(s)	63, 105, 165, 327
SatI	GCNGC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	122, 269
ScrFI	CCNGG	2 cut(s)	336, 384
SetI	ASST	6 cut(s)	55, 85, 118, 313, 395, 406
SfaNI	GCATC	1 cut(s)	267
SinI	GGWCC	2 cut(s)	122, 269
Sse9I	AATT	3 cut(s)	142, 162, 328
SseBI	AGGCCT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	260, 390
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	2 cut(s)	334, 382
StyI	CCWWGG	2 cut(s)	129, 282
TaiI	ACGT	1 cut(s)	55
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	3 cut(s)	142, 162, 328
Tru1I	TTAA	4 cut(s)	63, 105, 165, 327
Tru9I	TTAA	4 cut(s)	63, 105, 165, 327
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	17, 229
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	122, 269
XceI	RCATGY	1 cut(s)	235
XspI	CTAG	2 cut(s)	260, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.