Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Forward (+)

57126681 .. 57133924

Gene Structure 7244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG372900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGGAGATGTATATTGATGTATGGATTTATGAGTTTGGGATTTTCCTGTTGGCAGATTGGTTTTCACCGGCTACAGTGCATCGACTGGAGAGACAGGTGGTGCCACATTTTTTCTCAGGAAAATCACCAGAGTTTACTCCTGAGATGTACATGCAAAGTAGGAATGAAATTGTTGCCAAGTACATAGAAAACCCAGAGAAGAGGCTTACAGTTTCTGATTGCACAAAATTAACAAGCCATCTAAATACTGAAGATTTGACTCGAATAGTTCGGTTTCTTGATCACTGGGGAATTATCAATTACTCTGCTGCCGCACCAAGTCCTGAGCCTTGGAATGGTAATTCCTACTTAAGGGAGGAGCAAAATGGTGAGATTCATGTTCCATCAGCTGCGTTGAAGTCGATTGATAGTCTGATCAAATTTGACAAGCCCAGATGTAGGCTTAAAGCAGCTGATGTTTATAAGTCATTGTCCTGTCATGACGACGATGATGACACCTCTGATTTGGACAACAGAATTCGAAAACGTCTCTGTGAAAATCATTGCAATTATTGTTCGTGTTCTCTTCCCAGTGTATGCTATCAGTCACAGAAGGAGGTTGATGTACTGCTCTGCTCTGACTGCTTCCATGAGGGAAGATATGTTGTGGGCCATTCAAGCATAGATTTCATACGAGTGGATTCAACAAAAGATTATGGCGATCCAGATGGGGAAAATTGGACTGATCAAGAAACCCTACTGCTGCTTGAGGCCATGGAAATCTATAATGAGAACTGGAATGAAATTGCAGAGCATGTTGGTACAAAGTCAAAAGCGCAATGCATACTTCATTTTCTACGTTTGCCTGTGGAGGATGGCCTGCTGGAAAATATTGAAGTTCCAAAGATGCCTCTGTCATCCAACTCGTCAAATAGAGATGATCATGGCGGATTTTATTCAACTTCAAATGGGAATTCAGCAGGATCCTGCCTACAAGATGGTGATTCTGAAAGCAGGTTCCCTTTTGCAAATTCTGGGAATCCAGTCATGTCCCTGGTTGCCTTTCTGGCCTCTTCTGTTGGGCCAAGAGTCGCTGCATCTTGTGCCCATGCAGCCTTGGCAGTGTTGTCTGAGGACAATGGCTTACCTGCTTCTGGAAGTAATTTGCAGGAAGGATCAGGAGGACATAGGATGAACTTGGAGAGCATGCATGGTCAAGGTGGCGCTCATAAAAATATTGCAAATTCAGTTCAGCAGAAGGATGAGAAATCAGCAGGACAAGGTTCTTGGGGTAAAAATGAGGCAGGGGCGACTCCAGTACCTGCAGAAAAAGTTAAAGCTGCTGCCAAAGCTGGCCTTGCTGCTGCTGCAATAAAAGCAAAATTGTTTGCTGATCATGAAGAACGGGAAATTCAGAGGTTATCTGCTAATATTGTAAATCATCAGTTGAAGAGATTGGAGCTGAAGTTAAAGCAGTTTGCAGAAGTGGAAACTTATCTAATGAAAGAATGTGAACAAGTGGAGAAGACAAGGCAGAGGATGGTTGCCGAACGTACCCGTCTTATATCAACTCGGTTTGGTGCTGCTGGAGTTGCTCCACCCATTAACTTAGCAGGTGTTGGTCCTTCCATGGCCAATAATAATTCTGGTAACAATAGGCAACAAATTATGCCATCTTCGGCTTCCCAGCCAAGCGTATCCGGATACAGCAACAGCCAACCAGTCCATTCTCACATGCCTTTCATGCCACAACAATCAATGCTAGGATTGGGACCGAGGATGCCCTTGGCGTCCATACAAGCCTCCTCATCAGCTCCAAATGCCATGTTTAATTCCCCAGGGACTGGTCGGCCGACTCTAAGTCATCCGATGCTGAGGCCTGTACCGGGTACTAGCTCTGGTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

629

Amino Acids

68.96

Weight (kDa)

5.86

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	23 - 101	1.7e-19	SWIRM domain
Myb_DNA-binding	PF00249	238 - 280	3e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	240 - 282	2.8e-08	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	444 - 520	6.8e-25	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AarI	CACCTGC	1 cut(s)	1583
Acc36I	ACCTGC	4 cut(s)	984, 1135, 1309, 1583
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	1823
AccIII	TCCGGA	1 cut(s)	1679
AciI	CCGC	2 cut(s)	312, 927
AclWI	GGATC	4 cut(s)	695, 957, 970, 1162
AcoI	YGGCCR	2 cut(s)	1611, 1829
AcsI	RAATTY	6 cut(s)	419, 516, 952, 1009, 1222, 1389
AcuI	CTGAAG	2 cut(s)	270, 1463
AcyI	GRCGYC	1 cut(s)	1769
AfaI	GTAC	8 cut(s)	149, 182, 606, 802, 1299, 1534, 1863, 1870
AfiI	CCNNNNNNNGG	6 cut(s)	335, 351, 438, 1133, 1823, 1865
AflII	CTTAAG	1 cut(s)	349
AgsI	TTSAA	7 cut(s)	397, 657, 684, 875, 939, 945, 1429
AhdI	GACNNNNNGTC	1 cut(s)	1839
AjnI	CCWGG	2 cut(s)	1032, 1816
AluBI	AGCT	7 cut(s)	389, 452, 1319, 1331, 1441, 1793, 1875
AluI	AGCT	7 cut(s)	389, 452, 1319, 1331, 1441, 1793, 1875
Alw26I	GTCTC	2 cut(s)	85, 533
AlwI	GGATC	4 cut(s)	695, 957, 970, 1162
AlwNI	CAGNNNCTG	3 cut(s)	215, 1301, 1823
Aor13HI	TCCGGA	1 cut(s)	1679
AoxI	GGCC	9 cut(s)	649, 750, 856, 1047, 1061, 1333, 1611, 1829, 1856
ApoI	RAATTY	6 cut(s)	419, 516, 952, 1009, 1222, 1389
AspLEI	GCGC	2 cut(s)	817, 1205
AspS9I	GGNCC	4 cut(s)	649, 1061, 1601, 1751
AsuC2I	CCSGG	1 cut(s)	1866
AsuHPI	GGTGA	4 cut(s)	57, 117, 380, 992
AsuII	TTCGAA	1 cut(s)	520
AvaII	GGWCC	2 cut(s)	1601, 1751
BaeGI	GKGCMC	1 cut(s)	1087
BaeI	ACNNNNGTAYC	2 cut(s)	1281, 1314
BalI	TGGCCA	1 cut(s)	1613
BamHI	GGATCC	1 cut(s)	962
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	1511
BbvCI	CCTCAGC	1 cut(s)	1853
BccI	CCATC	7 cut(s)	246, 391, 701, 848, 971, 1513, 1660
BciT130I	CCWGG	2 cut(s)	1034, 1818
BciVI	GTATCC	2 cut(s)	1676, 1687
BclI	TGATCA	5 cut(s)	280, 414, 724, 919, 1372
BcnI	CCSGG	1 cut(s)	1866
BcoDI	GTCTC	2 cut(s)	85, 533
BfaI	CTAG	2 cut(s)	1742, 1872
BfmI	CTRYAG	2 cut(s)	72, 1302
BfoI	RGCGCY	1 cut(s)	1206
BfrI	CTTAAG	1 cut(s)	349
BfuAI	ACCTGC	4 cut(s)	984, 1135, 1309, 1583
BfuI	GTATCC	2 cut(s)	1676, 1687
BglI	GCCNNNNNGGC	1 cut(s)	1046
Bme1390I	CCNGG	3 cut(s)	1034, 1818, 1866
Bme18I	GGWCC	2 cut(s)	1601, 1751
BmeRI	GACNNNNNGTC	1 cut(s)	1839
BmgT120I	GGNCC	4 cut(s)	649, 1061, 1601, 1751
BmiI	GGNNCC	4 cut(s)	102, 964, 998, 1752
BmrFI	CCNGG	3 cut(s)	1034, 1818, 1866
BmrI	ACTGGG	2 cut(s)	295, 564
BmsI	GCATC	5 cut(s)	88, 876, 1085, 1749, 1839
BmuI	ACTGGG	2 cut(s)	295, 564
BpiI	GAAGAC	1 cut(s)	1511
BpmI	CTGGAG	3 cut(s)	107, 1278, 1587
Bpu10I	CCTNAGC	2 cut(s)	324, 1853
Bpu14I	TTCGAA	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	767
BpuMI	CCSGG	1 cut(s)	1866
BsaHI	GRCGYC	1 cut(s)	1769
BsaJI	CCNNGG	9 cut(s)	329, 753, 1032, 1095, 1608, 1754, 1764, 1816, 1817
BsaWI	WCCGGW	1 cut(s)	1679
BsaXI	ACNNNNNCTCC	2 cut(s)	1430, 1460
Bsc4I	CCNNNNNNNGG	6 cut(s)	335, 351, 438, 1133, 1823, 1865
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	8 cut(s)	90, 290, 570, 779, 1022, 1295, 1700, 1828
Bse3DI	GCAATG	2 cut(s)	541, 824
BseAI	TCCGGA	1 cut(s)	1679
BseBI	CCWGG	2 cut(s)	1034, 1818
BseDI	CCNNGG	9 cut(s)	329, 753, 1032, 1095, 1608, 1754, 1764, 1816, 1817
BseGI	GGATG	7 cut(s)	859, 896, 1176, 1246, 1524, 1764, 1843
BseLI	CCNNNNNNNGG	6 cut(s)	335, 351, 438, 1133, 1823, 1865
BseMI	GCAATG	2 cut(s)	541, 824
BseMII	CTCAG	5 cut(s)	129, 132, 315, 1101, 1844
BseNI	ACTGG	8 cut(s)	90, 290, 570, 779, 1022, 1295, 1700, 1828
BseRI	GAGGAG	2 cut(s)	371, 1774
BseSI	GKGCMC	1 cut(s)	1087
BseX3I	CGGCCG	1 cut(s)	1829
BseYI	CCCAGC	1 cut(s)	1665
Bsh1285I	CGRYCG	1 cut(s)	1832
BshFI	GGCC	9 cut(s)	651, 752, 858, 1049, 1063, 1335, 1613, 1831, 1858
BshNI	GGYRCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	1832
BsiSI	CCGG	3 cut(s)	68, 1680, 1865
BslFI	GGGAC	3 cut(s)	1015, 1764, 1834
BslI	CCNNNNNNNGG	6 cut(s)	335, 351, 438, 1133, 1823, 1865
BsmAI	GTCTC	2 cut(s)	85, 533
BsmBI	CGTCTC	1 cut(s)	533
BsmFI	GGGAC	3 cut(s)	1015, 1764, 1834
BsnI	GGCC	9 cut(s)	651, 752, 858, 1049, 1063, 1335, 1613, 1831, 1858
Bsp119I	TTCGAA	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	1087
Bsp13I	TCCGGA	1 cut(s)	1679
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	8 cut(s)	280, 414, 700, 724, 919, 962, 1154, 1372
Bsp19I	CCATGG	2 cut(s)	753, 1608
BspACI	CCGC	2 cut(s)	312, 927
BspANI	GGCC	9 cut(s)	651, 752, 858, 1049, 1063, 1335, 1613, 1831, 1858
BspCNI	CTCAG	5 cut(s)	128, 133, 316, 1102, 1845
BspEI	TCCGGA	1 cut(s)	1679
BspHI	TCATGA	2 cut(s)	478, 1375
BspLI	GGNNCC	4 cut(s)	102, 964, 998, 1752
BspMAI	CTGCAG	1 cut(s)	1306
BspMI	ACCTGC	4 cut(s)	984, 1135, 1309, 1583
BspPI	GGATC	4 cut(s)	695, 957, 970, 1162
BspT104I	TTCGAA	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	100
BspTI	CTTAAG	1 cut(s)	349
BsrDI	GCAATG	2 cut(s)	541, 824
BsrFI	RCCGGY	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	8 cut(s)	90, 290, 570, 779, 1022, 1295, 1700, 1828
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	9 cut(s)	329, 753, 1032, 1095, 1608, 1754, 1764, 1816, 1817
BssMI	GATC	8 cut(s)	280, 414, 700, 724, 919, 962, 1154, 1372
BssNI	GRCGYC	1 cut(s)	1769
BssT1I	CCWWGG	5 cut(s)	329, 753, 1095, 1608, 1764
Bst2UI	CCWGG	2 cut(s)	1034, 1818
Bst4CI	ACNGT	2 cut(s)	76, 211
Bst6I	CTCTTC	4 cut(s)	194, 570, 1057, 1424
BstACI	GRCGYC	1 cut(s)	1769
BstAFI	CTTAAG	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	1082
BstAUI	TGTACA	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	520
BstC8I	GCNNGC	3 cut(s)	860, 1187, 1333
BstDEI	CTNAG	7 cut(s)	115, 141, 324, 1110, 1588, 1838, 1853
BstDSI	CCRYGG	2 cut(s)	753, 1608
BstENI	CCTNNNNNAGG	1 cut(s)	349
BstF5I	GGATG	7 cut(s)	859, 896, 1176, 1246, 1524, 1764, 1843
BstH2I	RGCGCY	1 cut(s)	1206
BstHHI	GCGC	2 cut(s)	817, 1205
BstKTI	GATC	8 cut(s)	283, 417, 703, 727, 922, 965, 1157, 1375
BstMAI	GTCTC	2 cut(s)	85, 533
BstMBI	GATC	8 cut(s)	280, 414, 700, 724, 919, 962, 1154, 1372
BstMCI	CGRYCG	1 cut(s)	1832
BstNI	CCWGG	2 cut(s)	1034, 1818
BstNSI	RCATGY	4 cut(s)	154, 797, 1189, 1717
BstSCI	CCNGG	3 cut(s)	1032, 1816, 1864
BstSFI	CTRYAG	2 cut(s)	72, 1302
BstSLI	GKGCMC	1 cut(s)	1087
BstV2I	GAAGAC	1 cut(s)	1511
BstX2I	RGATCY	1 cut(s)	962
BstYI	RGATCY	1 cut(s)	962
BstZI	CGGCCG	1 cut(s)	1829
BsuI	GTATCC	2 cut(s)	1676, 1687
BsuRI	GGCC	9 cut(s)	651, 752, 858, 1049, 1063, 1335, 1613, 1831, 1858
BtgI	CCRYGG	2 cut(s)	753, 1608
BtsCI	GGATG	7 cut(s)	859, 896, 1176, 1246, 1524, 1764, 1843
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	4 cut(s)	81, 283, 577, 1107
BveI	ACCTGC	4 cut(s)	984, 1135, 1309, 1583
Cac8I	GCNNGC	3 cut(s)	860, 1187, 1333
CaiI	CAGNNNCTG	3 cut(s)	215, 1301, 1823
CciI	TCATGA	2 cut(s)	478, 1375
CfoI	GCGC	2 cut(s)	817, 1205
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	4 cut(s)	649, 1061, 1601, 1751
CseI	GACGC	1 cut(s)	1758
Csp6I	GTAC	8 cut(s)	148, 181, 605, 801, 1298, 1533, 1862, 1869
CviQI	GTAC	8 cut(s)	148, 181, 605, 801, 1298, 1533, 1862, 1869
DdeI	CTNAG	7 cut(s)	115, 141, 324, 1110, 1588, 1838, 1853
DpnI	GATC	8 cut(s)	282, 416, 702, 726, 921, 964, 1156, 1374
DpnII	GATC	8 cut(s)	280, 414, 700, 724, 919, 962, 1154, 1372
DriI	GACNNNNNGTC	1 cut(s)	1839
EaeI	YGGCCR	2 cut(s)	1611, 1829
EagI	CGGCCG	1 cut(s)	1829
Eam1104I	CTCTTC	4 cut(s)	194, 570, 1057, 1424
Eam1105I	GACNNNNNGTC	1 cut(s)	1839
EarI	CTCTTC	4 cut(s)	194, 570, 1057, 1424
EciI	GGCGGA	1 cut(s)	942
EclXI	CGGCCG	1 cut(s)	1829
Eco130I	CCWWGG	5 cut(s)	329, 753, 1095, 1608, 1764
Eco147I	AGGCCT	1 cut(s)	1858
Eco47I	GGWCC	2 cut(s)	1601, 1751
Eco52I	CGGCCG	1 cut(s)	1829
Eco57I	CTGAAG	2 cut(s)	270, 1463
EcoNI	CCTNNNNNAGG	1 cut(s)	349
EcoRI	GAATTC	2 cut(s)	516, 952
EcoRII	CCWGG	2 cut(s)	1032, 1816
EcoT14I	CCWWGG	5 cut(s)	329, 753, 1095, 1608, 1764
EcoT22I	ATGCAT	2 cut(s)	824, 1191
ErhI	CCWWGG	5 cut(s)	329, 753, 1095, 1608, 1764
Esp3I	CGTCTC	1 cut(s)	533
FalI	AAGNNNNNCTT	2 cut(s)	1320, 1352
FaqI	GGGAC	3 cut(s)	1015, 1764, 1834
FbaI	TGATCA	5 cut(s)	280, 414, 724, 919, 1372
FokI	GGATG	7 cut(s)	866, 883, 1183, 1253, 1531, 1771, 1830
FspBI	CTAG	2 cut(s)	1742, 1872
GlaI	GCGC	2 cut(s)	816, 1204
GsaI	CCCAGC	1 cut(s)	1669
GsuI	CTGGAG	3 cut(s)	107, 1278, 1587
HaeII	RGCGCY	1 cut(s)	1206
HaeIII	GGCC	9 cut(s)	651, 752, 858, 1049, 1063, 1335, 1613, 1831, 1858
HapII	CCGG	3 cut(s)	68, 1680, 1865
HgaI	GACGC	1 cut(s)	1758
HhaI	GCGC	2 cut(s)	817, 1205
Hin1I	GRCGYC	1 cut(s)	1769
Hin6I	GCGC	2 cut(s)	815, 1203
HinP1I	GCGC	2 cut(s)	815, 1203
HinfI	GANTC	8 cut(s)	259, 373, 680, 983, 1018, 1068, 1291, 1834
HpaII	CCGG	3 cut(s)	68, 1680, 1865
HphI	GGTGA	4 cut(s)	57, 117, 380, 992
Hpy166II	GTNNAC	2 cut(s)	135, 1493
Hpy188I	TCNGA	8 cut(s)	217, 414, 502, 619, 988, 1111, 1395, 1848
Hpy8I	GTNNAC	2 cut(s)	135, 1493
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	4 cut(s)	586, 1145, 1231, 1614
HpyCH4III	ACNGT	2 cut(s)	76, 211
HpyCH4IV	ACGT	3 cut(s)	526, 838, 1531
HpyF3I	CTNAG	7 cut(s)	115, 141, 324, 1110, 1588, 1838, 1853
HpySE526I	ACGT	3 cut(s)	526, 838, 1531
Hsp92I	GRCGYC	1 cut(s)	1769
HspAI	GCGC	2 cut(s)	815, 1203
Kpn2I	TCCGGA	1 cut(s)	1679
Ksp22I	TGATCA	5 cut(s)	280, 414, 724, 919, 1372
Kzo9I	GATC	8 cut(s)	280, 414, 700, 724, 919, 962, 1154, 1372
LmnI	GCTCC	4 cut(s)	358, 1438, 1579, 1798
LweI	GCATC	5 cut(s)	88, 876, 1085, 1749, 1839
MaeI	CTAG	2 cut(s)	1742, 1872
MaeII	ACGT	3 cut(s)	526, 838, 1531
MaeIII	GTNAC	2 cut(s)	585, 1628
MalI	GATC	8 cut(s)	282, 416, 702, 726, 921, 964, 1156, 1374
MboI	GATC	8 cut(s)	280, 414, 700, 724, 919, 962, 1154, 1372
MboII	GAAGA	9 cut(s)	211, 263, 557, 648, 1044, 1391, 1441, 1516, 1647
MflI	RGATCY	1 cut(s)	962
MhlI	GDGCHC	1 cut(s)	1087
MlsI	TGGCCA	1 cut(s)	1613
MluNI	TGGCCA	1 cut(s)	1613
MlyI	GAGTC	4 cut(s)	253, 1077, 1285, 1828
MmeI	TCCRAC	1 cut(s)	924
Mox20I	TGGCCA	1 cut(s)	1613
Mph1103I	ATGCAT	2 cut(s)	824, 1191
MroI	TCCGGA	1 cut(s)	1679
MscI	TGGCCA	1 cut(s)	1613
MseI	TTAA	7 cut(s)	230, 350, 444, 1314, 1448, 1584, 1809
MslI	CAYNNNNRTG	1 cut(s)	674
Msp20I	TGGCCA	1 cut(s)	1613
MspA1I	CMGCKG	2 cut(s)	389, 452
MspCI	CTTAAG	1 cut(s)	349
MspI	CCGG	3 cut(s)	68, 1680, 1865
MspR9I	CCNGG	3 cut(s)	1034, 1818, 1866
MvaI	CCWGG	2 cut(s)	1034, 1818
NciI	CCSGG	1 cut(s)	1866
NcoI	CCATGG	2 cut(s)	753, 1608
NdeII	GATC	8 cut(s)	280, 414, 700, 724, 919, 962, 1154, 1372
NlaIV	GGNNCC	4 cut(s)	102, 964, 998, 1752
NmuCI	GTSAC	1 cut(s)	585
NsiI	ATGCAT	2 cut(s)	824, 1191
NspI	RCATGY	4 cut(s)	154, 797, 1189, 1717
NspV	TTCGAA	1 cut(s)	520
PaeI	GCATGC	1 cut(s)	1189
PagI	TCATGA	2 cut(s)	478, 1375
PaqCI	CACCTGC	1 cut(s)	1583
PasI	CCCWGGG	1 cut(s)	1817
PceI	AGGCCT	1 cut(s)	1858
PfeI	GAWTC	4 cut(s)	373, 680, 983, 1018
PflMI	CCANNNNNTGG	1 cut(s)	1823
PleI	GAGTC	4 cut(s)	253, 1076, 1285, 1828
PpsI	GAGTC	4 cut(s)	253, 1076, 1285, 1828
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	1032, 1816
PspFI	CCCAGC	1 cut(s)	1665
PspGI	CCWGG	2 cut(s)	1032, 1816
PspN4I	GGNNCC	4 cut(s)	102, 964, 998, 1752
PspPI	GGNCC	4 cut(s)	649, 1061, 1601, 1751
PstI	CTGCAG	1 cut(s)	1306
PstNI	CAGNNNCTG	3 cut(s)	215, 1301, 1823
PsuI	RGATCY	1 cut(s)	962
PvuII	CAGCTG	2 cut(s)	389, 452
RsaI	GTAC	8 cut(s)	149, 182, 606, 802, 1299, 1534, 1863, 1870
RsaNI	GTAC	8 cut(s)	148, 181, 605, 801, 1298, 1533, 1862, 1869
RseI	CAYNNNNRTG	1 cut(s)	674
SaqAI	TTAA	7 cut(s)	230, 350, 444, 1314, 1448, 1584, 1809
Sau3AI	GATC	8 cut(s)	280, 414, 700, 724, 919, 962, 1154, 1372
Sau96I	GGNCC	4 cut(s)	649, 1061, 1601, 1751
SchI	GAGTC	4 cut(s)	253, 1077, 1285, 1828
ScrFI	CCNGG	3 cut(s)	1034, 1818, 1866
SduI	GDGCHC	1 cut(s)	1087
SfaNI	GCATC	5 cut(s)	88, 876, 1085, 1749, 1839
SfcI	CTRYAG	2 cut(s)	72, 1302
SfuI	TTCGAA	1 cut(s)	520
SinI	GGWCC	2 cut(s)	1601, 1751
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	349, 746
SmoI	CTYRAG	2 cut(s)	349, 746
SphI	GCATGC	1 cut(s)	1189
SseBI	AGGCCT	1 cut(s)	1858
SsiI	CCGC	2 cut(s)	312, 927
SspI	AATATT	3 cut(s)	871, 1216, 1411
SspMI	CTAG	2 cut(s)	1742, 1872
StuI	AGGCCT	1 cut(s)	1858
StyD4I	CCNGG	3 cut(s)	1032, 1816, 1864
StyI	CCWWGG	5 cut(s)	329, 753, 1095, 1608, 1764
TaaI	ACNGT	2 cut(s)	76, 211
TaiI	ACGT	3 cut(s)	529, 841, 1534
TaqI	TCGA	4 cut(s)	82, 262, 401, 520
TaqII	GACCGA	1 cut(s)	1768
TatI	WGTACW	3 cut(s)	147, 180, 604
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	4 cut(s)	373, 680, 983, 1018
Tru1I	TTAA	7 cut(s)	230, 350, 444, 1314, 1448, 1584, 1809
Tru9I	TTAA	7 cut(s)	230, 350, 444, 1314, 1448, 1584, 1809
TscAI	CASTG	4 cut(s)	81, 290, 577, 1107
TseFI	GTSAC	1 cut(s)	585
Tsp45I	GTSAC	1 cut(s)	585
TspDTI	ATGAA	9 cut(s)	180, 365, 658, 795, 818, 1187, 1392, 1496, 1711
TspRI	CASTG	4 cut(s)	81, 290, 577, 1107
Van91I	CCANNNNNTGG	1 cut(s)	1823
Vha464I	CTTAAG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	1601, 1751
XagI	CCTNNNNNAGG	1 cut(s)	349
XapI	RAATTY	6 cut(s)	419, 516, 952, 1009, 1222, 1389
XceI	RCATGY	4 cut(s)	154, 797, 1189, 1717
XspI	CTAG	2 cut(s)	1742, 1872
Zsp2I	ATGCAT	2 cut(s)	824, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.