Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042048.1

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2088

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042048.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

acaaaattaacaagccatctaaatactgaagatttgactcgaatagttcggtttcttgatcactggggaattatcaattactctgctgccgcaccaagtcctgagccttggaatggtaattcctacttaagggaggagcaaaatggtgagattcatgttccatcagctgcgttgaagtcgattgatagtctgatcaaatttgacaagcccagatgtaggcttaaagcagctgatgtttataagtcattgtcctgtcatgacgacgatgatgacacctctgatttggacaacagaattcgaaaacgtctctgtgaaaatcattgcaattattgttcgtgttctcttcccagtgtatgctatcagtcacagaaggaggttgatgtactgctgtgctctgactgcttccatgagggaagatatgttgtgggccattcaagcatagatttcatacgagtggattcaacaaaagattatggcgatccagatggggaaaattggactgatcaagaaaccctactgctgcttgaggccatggaaatctataatgagaactggaatgaaattgcagagcatgttggtacaaagtcaaaagcgcaatgcatacttcattttctacgtttgcctgtggaggatggcctgctggaaaatattgaagttccaaagatgcctctgtcatccaactcgtcaaatagagatgatcatggcggattttattcaacttcaaatgggaattcagcaggtgttcttacttacttatggttcacatccttcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

258

Amino Acids

29.28

Weight (kDa)

4.95

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AarI	CACCTGC	1 cut(s)	728
Acc36I	ACCTGC	1 cut(s)	728
AciI	CCGC	2 cut(s)	90, 705
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	3 cut(s)	197, 294, 730
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	384, 580
AfiI	CCNNNNNNNGG	3 cut(s)	113, 129, 216
AflII	CTTAAG	1 cut(s)	127
AgsI	TTSAA	7 cut(s)	175, 435, 462, 653, 717, 723, 772
AluBI	AGCT	2 cut(s)	167, 230
AluI	AGCT	2 cut(s)	167, 230
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	3 cut(s)	427, 528, 634
ApeKI	GCWGC	4 cut(s)	86, 167, 227, 520
ApoI	RAATTY	3 cut(s)	197, 294, 730
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	158
AsuII	TTCGAA	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	4 cut(s)	73, 154, 239, 507
BccI	CCATC	4 cut(s)	24, 169, 479, 626
BclI	TGATCA	4 cut(s)	58, 192, 502, 697
BcoDI	GTCTC	1 cut(s)	311
BfrI	CTTAAG	1 cut(s)	127
BfuAI	ACCTGC	1 cut(s)	728
BisI	GCNGC	5 cut(s)	87, 90, 168, 228, 521
BlsI	GCNGC	5 cut(s)	88, 91, 169, 229, 522
BmgT120I	GGNCC	1 cut(s)	427
BmrI	ACTGGG	2 cut(s)	73, 342
BmsI	GCATC	1 cut(s)	654
BmuI	ACTGGG	2 cut(s)	73, 342
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	107, 531
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 129, 216
Bse1I	ACTGG	3 cut(s)	68, 348, 557
Bse3DI	GCAATG	2 cut(s)	319, 602
BseDI	CCNNGG	2 cut(s)	107, 531
BseGI	GGATG	3 cut(s)	637, 674, 764
BseLI	CCNNNNNNNGG	3 cut(s)	113, 129, 216
BseMI	GCAATG	2 cut(s)	319, 602
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	3 cut(s)	68, 348, 557
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	4 cut(s)	73, 154, 239, 507
BshFI	GGCC	3 cut(s)	429, 530, 636
BsiHKAI	GWGCWC	1 cut(s)	395
BslI	CCNNNNNNNGG	3 cut(s)	113, 129, 216
BsmAI	GTCTC	1 cut(s)	311
BsmBI	CGTCTC	1 cut(s)	311
BsnI	GGCC	3 cut(s)	429, 530, 636
Bsp119I	TTCGAA	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	58, 192, 478, 502, 697
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	2 cut(s)	90, 705
BspANI	GGCC	3 cut(s)	429, 530, 636
BspCNI	CTCAG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	298
BspTI	CTTAAG	1 cut(s)	127
BsrDI	GCAATG	2 cut(s)	319, 602
BsrI	ACTGG	3 cut(s)	68, 348, 557
BssECI	CCNNGG	2 cut(s)	107, 531
BssMI	GATC	5 cut(s)	58, 192, 478, 502, 697
BssT1I	CCWWGG	2 cut(s)	107, 531
Bst6I	CTCTTC	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	127
BstBI	TTCGAA	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	531
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	637, 674, 764
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	5 cut(s)	61, 195, 481, 505, 700
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	5 cut(s)	58, 192, 478, 502, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	399, 435
BstNSI	RCATGY	1 cut(s)	575
BstV1I	GCAGC	4 cut(s)	73, 154, 239, 507
BsuRI	GGCC	3 cut(s)	429, 530, 636
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	3 cut(s)	637, 674, 764
BtsIMutI	CAGTG	2 cut(s)	61, 355
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	1 cut(s)	638
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	383, 579
CviAII	CATG	6 cut(s)	155, 257, 407, 532, 572, 701
CviJI	RGCY	9 cut(s)	15, 106, 167, 208, 220, 230, 429, 530, 636
CviKI_1	RGCY	9 cut(s)	15, 106, 167, 208, 220, 230, 429, 530, 636
CviQI	GTAC	2 cut(s)	383, 579
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	5 cut(s)	60, 194, 480, 504, 699
DpnII	GATC	5 cut(s)	58, 192, 478, 502, 697
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	720
Eco130I	CCWWGG	2 cut(s)	107, 531
Eco57I	CTGAAG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoRI	GAATTC	2 cut(s)	294, 730
EcoT14I	CCWWGG	2 cut(s)	107, 531
EcoT22I	ATGCAT	1 cut(s)	602
ErhI	CCWWGG	2 cut(s)	107, 531
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	6 cut(s)	158, 260, 410, 535, 575, 704
FatI	CATG	6 cut(s)	154, 256, 406, 531, 571, 700
FbaI	TGATCA	4 cut(s)	58, 192, 502, 697
Fnu4HI	GCNGC	5 cut(s)	87, 90, 168, 228, 521
FokI	GGATG	3 cut(s)	644, 661, 751
Fsp4HI	GCNGC	5 cut(s)	87, 90, 168, 228, 521
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	5 cut(s)	87, 90, 168, 228, 521
HaeIII	GGCC	3 cut(s)	429, 530, 636
HhaI	GCGC	1 cut(s)	595
Hin1II	CATG	6 cut(s)	158, 260, 410, 535, 575, 704
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	3 cut(s)	37, 151, 458
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	762
Hpy188I	TCNGA	3 cut(s)	192, 280, 397
Hpy188III	TCNNGA	5 cut(s)	56, 101, 257, 482, 506
Hpy8I	GTNNAC	1 cut(s)	762
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	304, 616
HpyCH4V	TGCA	3 cut(s)	324, 566, 600
HpyF10VI	GCNNNNNNNGC	2 cut(s)	399, 435
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	2 cut(s)	304, 616
Hsp92II	CATG	6 cut(s)	158, 260, 410, 535, 575, 704
HspAI	GCGC	1 cut(s)	593
Ksp22I	TGATCA	4 cut(s)	58, 192, 502, 697
Kzo9I	GATC	5 cut(s)	58, 192, 478, 502, 697
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	4 cut(s)	73, 154, 239, 507
LweI	GCATC	1 cut(s)	654
MaeII	ACGT	2 cut(s)	304, 616
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	5 cut(s)	60, 194, 480, 504, 699
MboI	GATC	5 cut(s)	58, 192, 478, 502, 697
MboII	GAAGA	3 cut(s)	41, 335, 426
MhlI	GDGCHC	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	7 cut(s)	127, 286, 367, 403, 520, 622, 678
Mph1103I	ATGCAT	1 cut(s)	602
MseI	TTAA	3 cut(s)	8, 128, 222
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	2 cut(s)	167, 230
MspCI	CTTAAG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	399, 435
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	5 cut(s)	58, 192, 478, 502, 697
NlaIII	CATG	6 cut(s)	158, 260, 410, 535, 575, 704
NmuCI	GTSAC	1 cut(s)	363
NsiI	ATGCAT	1 cut(s)	602
NspI	RCATGY	1 cut(s)	575
NspV	TTCGAA	1 cut(s)	298
PagI	TCATGA	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	151, 458
PkrI	GCNGC	5 cut(s)	88, 91, 169, 229, 522
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	427
PvuII	CAGCTG	2 cut(s)	167, 230
RsaI	GTAC	2 cut(s)	384, 580
RsaNI	GTAC	2 cut(s)	383, 579
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	8, 128, 222
SatI	GCNGC	5 cut(s)	87, 90, 168, 228, 521
Sau3AI	GATC	5 cut(s)	58, 192, 478, 502, 697
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	7 cut(s)	169, 232, 278, 307, 378, 619, 742
SfaNI	GCATC	1 cut(s)	654
SfuI	TTCGAA	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	127, 524
SmoI	CTYRAG	2 cut(s)	127, 524
SsiI	CCGC	2 cut(s)	90, 705
SspI	AATATT	1 cut(s)	649
StyI	CCWWGG	2 cut(s)	107, 531
TaiI	ACGT	2 cut(s)	307, 619
TaqI	TCGA	3 cut(s)	40, 179, 298
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	151, 458
Tru1I	TTAA	3 cut(s)	8, 128, 222
Tru9I	TTAA	3 cut(s)	8, 128, 222
TscAI	CASTG	2 cut(s)	68, 355
TseFI	GTSAC	1 cut(s)	363
TseI	GCWGC	4 cut(s)	86, 167, 227, 520
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	4 cut(s)	143, 436, 573, 596
TspRI	CASTG	2 cut(s)	68, 355
Vha464I	CTTAAG	1 cut(s)	127
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	3 cut(s)	197, 294, 730
XceI	RCATGY	1 cut(s)	575
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.