Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413639.1

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Reverse (-)

314 .. 724

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413639.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgaaagaatgtgaacaagtggagaagacaaggcagaggatggttgccgaacgtacccgtcttatatcaactcggtttggtgctgctggagttgctccacccattaacttagcaggtgttggtccttccatggccaataataattctggtaacaataggcaacaaattatgccatcttcggcttcccagccaagcgtatccggatacagcaacagccaaccagtccattctcacatgcctttcatgccacaacaatcaatgctaggattgggaccgaggatgcccttggcgtccatacaagcctcctcatcagctccaaatgccatgtttaattccccagggactggtcggccgactctaagtcatccgatgctgaggcctgtaccgggtactagctctggtttaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

136

Amino Acids

14.29

Weight (kDa)

11.48

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	200
AcoI	YGGCCR	2 cut(s)	132, 350
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	3 cut(s)	55, 384, 391
AfiI	CCNNNNNNNGG	2 cut(s)	344, 386
AhdI	GACNNNNNGTC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	314, 396
AluI	AGCT	2 cut(s)	314, 396
AlwNI	CAGNNNCTG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	200
AoxI	GGCC	3 cut(s)	132, 350, 377
ApeKI	GCWGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	122, 272
AsuC2I	CCSGG	1 cut(s)	387
AvaII	GGWCC	2 cut(s)	122, 272
BalI	TGGCCA	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	34, 181
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	2 cut(s)	197, 208
BcnI	CCSGG	1 cut(s)	387
BfaI	CTAG	2 cut(s)	263, 393
BfuAI	ACCTGC	1 cut(s)	104
BfuI	GTATCC	2 cut(s)	197, 208
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	339, 387
Bme18I	GGWCC	2 cut(s)	122, 272
BmeRI	GACNNNNNGTC	1 cut(s)	360
BmgT120I	GGNCC	2 cut(s)	122, 272
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	339, 387
BmsI	GCATC	2 cut(s)	270, 360
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	5 cut(s)	129, 275, 285, 337, 338
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 386
Bse1I	ACTGG	2 cut(s)	221, 349
BseAI	TCCGGA	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	5 cut(s)	129, 275, 285, 337, 338
BseGI	GGATG	3 cut(s)	45, 285, 364
BseLI	CCNNNNNNNGG	2 cut(s)	344, 386
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	221, 349
BseRI	GAGGAG	1 cut(s)	295
BseX3I	CGGCCG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	3 cut(s)	134, 352, 379
BsiEI	CGRYCG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	201, 386
BslFI	GGGAC	2 cut(s)	285, 355
BslI	CCNNNNNNNGG	2 cut(s)	344, 386
BsmFI	GGGAC	2 cut(s)	285, 355
BsnI	GGCC	3 cut(s)	134, 352, 379
Bsp13I	TCCGGA	1 cut(s)	200
Bsp19I	CCATGG	1 cut(s)	129
BspANI	GGCC	3 cut(s)	134, 352, 379
BspCNI	CTCAG	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	221, 349
BssECI	CCNNGG	5 cut(s)	129, 275, 285, 337, 338
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	2 cut(s)	129, 285
Bst2UI	CCWGG	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	109, 359, 374
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	45, 285, 364
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 244, 320
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	337, 385
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	32
BstZI	CGGCCG	1 cut(s)	350
BsuI	GTATCC	2 cut(s)	197, 208
BsuRI	GGCC	3 cut(s)	134, 352, 379
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	3 cut(s)	45, 285, 364
BveI	ACCTGC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	122, 272
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	3 cut(s)	54, 383, 390
CviAII	CATG	4 cut(s)	130, 235, 244, 325
CviJI	RGCY	9 cut(s)	134, 182, 190, 216, 302, 314, 352, 379, 396
CviKI_1	RGCY	9 cut(s)	134, 182, 190, 216, 302, 314, 352, 379, 396
CviQI	GTAC	3 cut(s)	54, 383, 390
DdeI	CTNAG	3 cut(s)	109, 359, 374
DriI	GACNNNNNGTC	1 cut(s)	360
EaeI	YGGCCR	2 cut(s)	132, 350
EagI	CGGCCG	1 cut(s)	350
Eam1105I	GACNNNNNGTC	1 cut(s)	360
EclXI	CGGCCG	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	129, 285
Eco147I	AGGCCT	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	122, 272
Eco52I	CGGCCG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	129, 285
ErhI	CCWWGG	2 cut(s)	129, 285
FaeI	CATG	4 cut(s)	133, 238, 247, 328
FaiI	YATR	7 cut(s)	65, 131, 170, 236, 245, 296, 326
FaqI	GGGAC	2 cut(s)	285, 355
FatI	CATG	4 cut(s)	129, 234, 243, 324
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	3 cut(s)	52, 292, 351
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	2 cut(s)	263, 393
GluI	GCNGC	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	134, 352, 379
HapII	CCGG	2 cut(s)	201, 386
HgaI	GACGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	4 cut(s)	133, 238, 247, 328
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	2 cut(s)	201, 386
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 244, 320
HpyF3I	CTNAG	3 cut(s)	109, 359, 374
HpySE526I	ACGT	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	4 cut(s)	133, 238, 247, 328
Kpn2I	TCCGGA	1 cut(s)	200
LmnI	GCTCC	2 cut(s)	100, 319
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	270, 360
MaeI	CTAG	2 cut(s)	263, 393
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	37, 168
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	3 cut(s)	142, 165, 331
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	5 cut(s)	30, 270, 313, 316, 369
Mox20I	TGGCCA	1 cut(s)	134
MroI	TCCGGA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	2 cut(s)	105, 330
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	2 cut(s)	201, 386
MspR9I	CCNGG	2 cut(s)	339, 387
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	92, 244, 320
NciI	CCSGG	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	129
NlaIII	CATG	4 cut(s)	133, 238, 247, 328
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	1 cut(s)	238
PaqCI	CACCTGC	1 cut(s)	104
PasI	CCCWGGG	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	122, 272
PstNI	CAGNNNCTG	1 cut(s)	344
RsaI	GTAC	3 cut(s)	55, 384, 391
RsaNI	GTAC	3 cut(s)	54, 383, 390
SaqAI	TTAA	2 cut(s)	105, 330
SatI	GCNGC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	122, 272
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	339, 387
SetI	ASST	5 cut(s)	55, 118, 316, 398, 409
SfaNI	GCATC	2 cut(s)	270, 360
SinI	GGWCC	2 cut(s)	122, 272
Sse9I	AATT	3 cut(s)	142, 165, 331
SseBI	AGGCCT	1 cut(s)	379
SspMI	CTAG	2 cut(s)	263, 393
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	2 cut(s)	337, 385
StyI	CCWWGG	2 cut(s)	129, 285
TaiI	ACGT	1 cut(s)	55
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	3 cut(s)	142, 165, 331
Tru1I	TTAA	2 cut(s)	105, 330
Tru9I	TTAA	2 cut(s)	105, 330
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	17, 232
Van91I	CCANNNNNTGG	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	122, 272
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	2 cut(s)	263, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.