Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Forward (+)

7636653 .. 7644302

Gene Structure 7650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1041900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2361 bp

ATGCCTGCTTCTCCTTCAGACTCCCGCGGCAAATGGAGGAAGCGGAAGCGCGACGCCCAAATTCGCCGGAACAAGCGCGAGGACGACGAAGATGACGACGCCGACGACAACGAGCTCGACCCGAACGACGACTCGGAGGACCCCCAACATAACCCCCAATCCGCTCCCGCACCCGATCCCGCCCCTCACGAGACCGAGGTCCTCGACGGTGGGGTCCGCGTAAGCGACTTCCCTCCCGTCGTTTTGCGCACCGTCAACCGGCCCCATTCCTCCGTTCTTGCCCTCGTCGCGCTCGAGCGAGCCAATCATTGCGGCGGGGATGCCAAGGGGCCCGCCAGTCCGATTGTATTGGAGAATGTGTCGTACGGTCAGCTCCAGGCGCTGTCCGCCGTGCCTGCCGATAGTCCGGCGTTGGATCCGGACCGTGCAGATGGCTCCGGAGCGGCTTACGTGGTCACACCTCCGTCGACTATGGAGGGCCGTGGCGTTGTGAAGCGGTATGGGAACAGAGTTCATGTGGTTCCAATGCACGCAGATTGGTTTTCACCTGCCACAGTGCATCGACTGGAGAGACAGGTGGTGCCGCATTTTTTCTCAGGAAAATCATCAGATCATACTCCTGAGCTATACATGCATTGTAGGAATGAAATTGTTGCCAAATACATGGAAAATCCAGAGAAAAGGCTTGCATTTTCTGATTTCCAACAATTATTAGGTCGTCTAAGTACTGAAGATTTGACTCGAATAATTCGTTTTCTTGATCACTGGGGAATTATTAATTACTGTGCTGAAGCACCCAGTCATGAGCCGTGCAATGGCAGTTCTTACTTAAGGGAGGAGGTAAATGGTGAGATTCAAGTGCCATCAGCTGCTCTGAAGTCCATTGATAGTTTAATCAAATTTGACAAGCCCAGATGTAGGCTTAAGGCAGCTGAAGTTTATTCGTCATTGCCATGTCATGGTGATGATGATGTCTCTGATTTGGACAACACAATTCGGAAGCGTCTATCTGAAAATCATTGCAATTACTGTTCTTCTTCTCTTCCCAGTGTATACTATCAGTCACAGAAAGAGGTTGATGTATTGCTGTGCTCTAATTGCTTCCATGAGGGAAGATATGTTGTTGGTCATTCAAGCATAGATTTTGTACGGATTGATTCAACAAAAGATTATGGTGATTTGGATGGGGAAAGTTGGACCGATCAAGAAACCCTATTGCTGCTCGAGGCAATGGAAATACACAATGAGAACTGGAACGAAATTGCTGAGTATGTCGGTTCAAAATCAAAAGCACAATGCATCCTTCATTTTCTTCGTTTGCCTGTGGAGGATGGCCTGCTTGAAAATATTGAAGTTCCGGGCATGTCCCTGTCCTCCAATTTGTCAGATAAAGATGGTCGTGGAGGATTTCATTCAAGTTCAAATGGTGATGCAGCAGGATCCTGCCTACAAGATGCTGATTCTGACAGTAGGTTCCCTTTTGCGAATTCTGGGAATCCAGTCATGGCCCTGGTTTCGTTTCTGGCCTCCTCTGTTGGGCCAAGAGTCGCTGCATCTTGTTCCCATGCAGCCTTGACGGTATTTTCTGAGGATAATGGTGTATCTGCCTCTACAAGTATAATGGAAGGATCAGGCCAGAGGATGAACCCTGAGAGTATACATGGTAGAGAAGGTGGTACTTATAGAAATTCTGCAAATTCAATTCCGCAAAAGGAAAAGAACTCAGCAGGCCATGGTTCTTGGGGTCAAAATGAGGCAGGGGTGGTTCCAATACGTACAGAAAAAGTAAAAGCTGCTGCCAAGGCCGGGCTTGCTGCAGCTGCAATAAAGGCAAAATTGTTTGCTGATCACGAAGAACGGGAAATTCAGAGGTTATCTGCTAATATCATAAATCATCAGTTGAAGAGATTGGAGCTGAAGTTAAAGCAGTTTGCAGAAGTGGAAACCTTCCTAATGAAAGAATGCGAACAAGTGGAGAAGACAAGGCAGAGGATGGTTAGTGAACGTGCCCGCATTATGTCAACTCAGTTTGGACCTGCTGGTGCTTCGCCCATGAGTTTAGCAGGTGTTGGTTCTTCCATGTCCAATAATAATGTTGGTAACAATAGGCAACAGATTATGTCACCTTCAGCTTCACAACCGAGCATATCAGGATACAGCAACAACCAACCAGTCAATCCCCACATGCCATTCGTGCCACGTCAATCAATGCAAGGGTTGGGGCCGAGGATGCCTTTGACATCCATACAGCCGTCCTCATCAGCTCAAAATGCCATGTTTAATGCCACAGGGGCTGCCCAGCCGACGCTAAATCATCCAATGTTGAGGCCTGTACCAGGTACTAGCTCCGGTCTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

787

Amino Acids

85.69

Weight (kDa)

5.69

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	182 - 261	2.1e-19	SWIRM domain
Myb_DNA-binding	PF00249	398 - 439	1.2e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	399 - 441	3.1e-07	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	602 - 676	2.5e-25	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	556, 2054
AasI	GACNNNNNNGTC	1 cut(s)	212
Acc16I	TGCGCA	1 cut(s)	248
Acc36I	ACCTGC	3 cut(s)	556, 2044, 2054
AccB1I	GGYRCC	1 cut(s)	580
AccB7I	CCANNNNNTGG	1 cut(s)	959
AccBSI	CCGCTC	2 cut(s)	164, 443
AccI	GTMKAC	3 cut(s)	467, 1053, 1657
AccII	CGCG	5 cut(s)	27, 51, 78, 219, 290
AccIII	TCCGGA	2 cut(s)	418, 437
AclWI	GGATC	6 cut(s)	170, 410, 423, 1434, 1447, 1636
AcsI	RAATTY	6 cut(s)	60, 899, 1486, 1687, 1696, 1863
AcuI	CTGAAG	6 cut(s)	750, 810, 896, 954, 1937, 2112
AcyI	GRCGYC	2 cut(s)	54, 99
AfaI	GTAC	7 cut(s)	365, 727, 1149, 1678, 1777, 2334, 2341
AfiI	CCNNNNNNNGG	7 cut(s)	258, 815, 918, 959, 1536, 1806, 2336
AflII	CTTAAG	2 cut(s)	829, 923
AjiI	CACGTC	1 cut(s)	2201
AjnI	CCWGG	3 cut(s)	375, 1509, 2335
Alw21I	GWGCWC	2 cut(s)	117, 1094
Alw26I	GTCTC	3 cut(s)	185, 565, 979
AlwI	GGATC	6 cut(s)	170, 410, 423, 1434, 1447, 1636
AlwNI	CAGNNNCTG	2 cut(s)	382, 2294
Ama87I	CYCGRG	2 cut(s)	293, 1223
Aor13HI	TCCGGA	2 cut(s)	418, 437
ApaI	GGGCCC	1 cut(s)	333
ApoI	RAATTY	6 cut(s)	60, 899, 1486, 1687, 1696, 1863
AseI	ATTAAT	1 cut(s)	777
AspLEI	GCGC	5 cut(s)	51, 78, 249, 292, 382
AsuC2I	CCSGG	2 cut(s)	1359, 1807
AsuHPI	GGTGA	6 cut(s)	537, 860, 974, 1187, 1439, 2115
AvaI	CYCGRG	2 cut(s)	293, 1223
AvaII	GGWCC	6 cut(s)	139, 199, 214, 421, 1197, 2033
BaeGI	GKGCMC	2 cut(s)	333, 2011
BamHI	GGATCC	2 cut(s)	415, 1439
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	2 cut(s)	117, 333
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	1985
Bbv12I	GWGCWC	2 cut(s)	117, 1094
BccI	CCATC	6 cut(s)	425, 871, 1178, 1325, 1388, 1987
BceAI	ACGGC	4 cut(s)	374, 465, 793, 2236
BciT130I	CCWGG	3 cut(s)	377, 1511, 2337
BciVI	GTATCC	1 cut(s)	2147
BclI	TGATCA	2 cut(s)	760, 1846
BcnI	CCSGG	2 cut(s)	1359, 1807
BcoDI	GTCTC	3 cut(s)	185, 565, 979
BfaI	CTAG	2 cut(s)	2343, 2354
BfmI	CTRYAG	1 cut(s)	1815
BfoI	RGCGCY	1 cut(s)	383
BfrI	CTTAAG	2 cut(s)	829, 923
BfuAI	ACCTGC	3 cut(s)	556, 2044, 2054
BfuI	GTATCC	1 cut(s)	2147
BglI	GCCNNNNNGGC	1 cut(s)	2291
BmcAI	AGTACT	1 cut(s)	727
Bme1390I	CCNGG	5 cut(s)	377, 1359, 1511, 1807, 2337
Bme18I	GGWCC	6 cut(s)	139, 199, 214, 421, 1197, 2033
BmeT110I	CYCGRG	2 cut(s)	293, 1223
BmgBI	CACGTC	1 cut(s)	2201
BmrFI	CCNGG	5 cut(s)	377, 1359, 1511, 1807, 2337
BmrI	ACTGGG	3 cut(s)	775, 792, 1041
BmsI	GCATC	7 cut(s)	310, 568, 1308, 1420, 1444, 1562, 2220
BmuI	ACTGGG	3 cut(s)	775, 792, 1041
BoxI	GACNNNNGTC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	1985
BpmI	CTGGAG	2 cut(s)	359, 587
Bpu10I	CCTNAGC	1 cut(s)	621
BpuMI	CCSGG	2 cut(s)	1359, 1807
BsaAI	YACGTR	2 cut(s)	451, 1775
BsaHI	GRCGYC	2 cut(s)	54, 99
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	8 cut(s)	25, 195, 324, 481, 1509, 1732, 1800, 2225
BsaWI	WCCGGW	3 cut(s)	418, 437, 2348
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 1904, 1934
Bsc4I	CCNNNNNNNGG	7 cut(s)	258, 815, 918, 959, 1536, 1806, 2336
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	8 cut(s)	336, 570, 770, 798, 1047, 1256, 1499, 2171
Bse3DI	GCAATG	5 cut(s)	307, 820, 947, 1018, 1236
BseAI	TCCGGA	2 cut(s)	418, 437
BseBI	CCWGG	3 cut(s)	377, 1511, 2337
BseDI	CCNNGG	8 cut(s)	25, 195, 324, 481, 1509, 1732, 1800, 2225
BseGI	GGATG	9 cut(s)	325, 1189, 1299, 1336, 1647, 1998, 2235, 2240, 2314
BseLI	CCNNNNNNNGG	7 cut(s)	258, 815, 918, 959, 1536, 1806, 2336
BseMI	GCAATG	5 cut(s)	307, 820, 947, 1018, 1236
BseMII	CTCAG	7 cut(s)	609, 612, 1257, 1578, 1641, 1737, 2039
BseNI	ACTGG	8 cut(s)	336, 570, 770, 798, 1047, 1256, 1499, 2171
BseRI	GAGGAG	2 cut(s)	851, 1519
BseSI	GKGCMC	2 cut(s)	333, 2011
BseYI	CCCAGC	1 cut(s)	2298
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	5 cut(s)	27, 51, 78, 219, 290
BshNI	GGYRCC	1 cut(s)	580
BsiHKAI	GWGCWC	2 cut(s)	117, 1094
BsiHKCI	CYCGRG	2 cut(s)	293, 1223
BsiSI	CCGG	8 cut(s)	67, 259, 407, 419, 438, 1358, 1806, 2349
BsiWI	CGTACG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	1351
BslI	CCNNNNNNNGG	7 cut(s)	258, 815, 918, 959, 1536, 1806, 2336
BsmAI	GTCTC	3 cut(s)	185, 565, 979
BsmFI	GGGAC	1 cut(s)	1351
BsmI	GAATGC	1 cut(s)	1967
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	2 cut(s)	293, 1223
Bsp120I	GGGCCC	1 cut(s)	329
Bsp1286I	GDGCHC	4 cut(s)	117, 333, 1094, 2011
Bsp13I	TCCGGA	2 cut(s)	418, 437
Bsp143I	GATC	8 cut(s)	175, 415, 610, 760, 1201, 1439, 1628, 1846
Bsp19I	CCATGG	1 cut(s)	1732
BspCNI	CTCAG	7 cut(s)	608, 613, 1258, 1579, 1642, 1736, 2038
BspEI	TCCGGA	2 cut(s)	418, 437
BspFNI	CGCG	5 cut(s)	27, 51, 78, 219, 290
BspHI	TCATGA	1 cut(s)	802
BspMAI	CTGCAG	1 cut(s)	1819
BspMI	ACCTGC	3 cut(s)	556, 2044, 2054
BspPI	GGATC	6 cut(s)	170, 410, 423, 1434, 1447, 1636
BspT107I	GGYRCC	1 cut(s)	580
BspTI	CTTAAG	2 cut(s)	829, 923
BspTNI	GGTCTC	1 cut(s)	185
BsrBI	CCGCTC	2 cut(s)	164, 443
BsrDI	GCAATG	5 cut(s)	307, 820, 947, 1018, 1236
BsrFI	RCCGGY	1 cut(s)	258
BsrI	ACTGG	8 cut(s)	336, 570, 770, 798, 1047, 1256, 1499, 2171
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	8 cut(s)	25, 195, 324, 481, 1509, 1732, 1800, 2225
BssMI	GATC	8 cut(s)	175, 415, 610, 760, 1201, 1439, 1628, 1846
BssNAI	GTATAC	2 cut(s)	1054, 1658
BssNI	GRCGYC	2 cut(s)	54, 99
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	3 cut(s)	324, 1732, 1800
Bst1107I	GTATAC	2 cut(s)	1054, 1658
Bst2BI	CACGAG	1 cut(s)	188
Bst2UI	CCWGG	3 cut(s)	377, 1511, 2337
Bst4CI	ACNGT	9 cut(s)	209, 253, 368, 425, 556, 785, 1031, 1469, 1579
Bst6I	CTCTTC	2 cut(s)	1047, 1898
BstACI	GRCGYC	2 cut(s)	54, 99
BstAFI	CTTAAG	2 cut(s)	829, 923
BstBAI	YACGTR	2 cut(s)	451, 1775
BstDEI	CTNAG	8 cut(s)	595, 621, 722, 1266, 1587, 1650, 1723, 2025
BstDSI	CCRYGG	3 cut(s)	25, 481, 1732
BstENI	CCTNNNNNAGG	1 cut(s)	2334
BstF5I	GGATG	9 cut(s)	325, 1189, 1299, 1336, 1647, 1998, 2235, 2240, 2314
BstFNI	CGCG	5 cut(s)	27, 51, 78, 219, 290
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	5 cut(s)	51, 78, 249, 292, 382
BstKTI	GATC	8 cut(s)	178, 418, 613, 763, 1204, 1442, 1631, 1849
BstMAI	GTCTC	3 cut(s)	185, 565, 979
BstMBI	GATC	8 cut(s)	175, 415, 610, 760, 1201, 1439, 1628, 1846
BstNI	CCWGG	3 cut(s)	377, 1511, 2337
BstNSI	RCATGY	3 cut(s)	634, 1366, 2188
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	5 cut(s)	375, 1357, 1509, 1805, 2335
BstSFI	CTRYAG	1 cut(s)	1815
BstSLI	GKGCMC	2 cut(s)	333, 2011
BstSNI	TACGTA	1 cut(s)	1775
BstUI	CGCG	5 cut(s)	27, 51, 78, 219, 290
BstV2I	GAAGAC	1 cut(s)	1985
BstX2I	RGATCY	2 cut(s)	415, 1439
BstXI	CCANNNNNNTGG	1 cut(s)	664
BstYI	RGATCY	2 cut(s)	415, 1439
BstZ17I	GTATAC	2 cut(s)	1054, 1658
BsuI	GTATCC	1 cut(s)	2147
BtgI	CCRYGG	3 cut(s)	25, 481, 1732
BtrI	CACGTC	1 cut(s)	2201
BtsCI	GGATG	9 cut(s)	325, 1189, 1299, 1336, 1647, 1998, 2235, 2240, 2314
BtsIMutI	CAGTG	3 cut(s)	561, 763, 1054
BveI	ACCTGC	3 cut(s)	556, 2044, 2054
CaiI	CAGNNNCTG	2 cut(s)	382, 2294
CciI	TCATGA	1 cut(s)	802
CfoI	GCGC	5 cut(s)	51, 78, 249, 292, 382
Cfr10I	RCCGGY	1 cut(s)	258
Cfr42I	CCGCGG	1 cut(s)	28
CpoI	CGGWCCG	1 cut(s)	421
CseI	GACGC	4 cut(s)	62, 107, 992, 2314
CsiI	ACCWGGT	1 cut(s)	2335
Csp6I	GTAC	7 cut(s)	364, 726, 1148, 1677, 1776, 2333, 2340
CspI	CGGWCCG	1 cut(s)	421
CviQI	GTAC	7 cut(s)	364, 726, 1148, 1677, 1776, 2333, 2340
DdeI	CTNAG	8 cut(s)	595, 621, 722, 1266, 1587, 1650, 1723, 2025
DpnI	GATC	8 cut(s)	177, 417, 612, 762, 1203, 1441, 1630, 1848
DpnII	GATC	8 cut(s)	175, 415, 610, 760, 1201, 1439, 1628, 1846
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	1047, 1898
EarI	CTCTTC	2 cut(s)	1047, 1898
EciI	GGCGGA	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	115
Eco105I	TACGTA	1 cut(s)	1775
Eco130I	CCWWGG	3 cut(s)	324, 1732, 1800
Eco147I	AGGCCT	1 cut(s)	2329
Eco24I	GRGCYC	2 cut(s)	117, 333
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	6 cut(s)	139, 199, 214, 421, 1197, 2033
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	6 cut(s)	750, 810, 896, 954, 1937, 2112
Eco88I	CYCGRG	2 cut(s)	293, 1223
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	2334
EcoO109I	RGGNCCY	3 cut(s)	139, 199, 329
EcoRI	GAATTC	1 cut(s)	1486
EcoRII	CCWGG	3 cut(s)	375, 1509, 2335
EcoT14I	CCWWGG	3 cut(s)	324, 1732, 1800
EcoT22I	ATGCAT	2 cut(s)	636, 1301
EcoT38I	GRGCYC	2 cut(s)	117, 333
ErhI	CCWWGG	3 cut(s)	324, 1732, 1800
FaqI	GGGAC	1 cut(s)	1351
FauI	CCCGC	6 cut(s)	32, 175, 187, 308, 340, 2018
FbaI	TGATCA	2 cut(s)	760, 1846
FblI	GTMKAC	3 cut(s)	467, 1053, 1657
FokI	GGATG	9 cut(s)	332, 1196, 1286, 1343, 1654, 2005, 2227, 2242, 2301
FriOI	GRGCYC	2 cut(s)	117, 333
FspBI	CTAG	2 cut(s)	2343, 2354
FspI	TGCGCA	1 cut(s)	248
GlaI	GCGC	5 cut(s)	50, 77, 248, 291, 381
GsaI	CCCAGC	1 cut(s)	2302
GsuI	CTGGAG	2 cut(s)	359, 587
HaeII	RGCGCY	1 cut(s)	383
HapII	CCGG	8 cut(s)	67, 259, 407, 419, 438, 1358, 1806, 2349
HgaI	GACGC	4 cut(s)	62, 107, 992, 2314
HhaI	GCGC	5 cut(s)	51, 78, 249, 292, 382
Hin1I	GRCGYC	2 cut(s)	54, 99
Hin6I	GCGC	5 cut(s)	49, 76, 247, 290, 380
HinP1I	GCGC	5 cut(s)	49, 76, 247, 290, 380
HincII	GTYRAC	3 cut(s)	256, 468, 2022
HindII	GTYRAC	3 cut(s)	256, 468, 2022
HinfI	GANTC	8 cut(s)	20, 131, 739, 853, 1157, 1460, 1495, 1545
HpaII	CCGG	8 cut(s)	67, 259, 407, 419, 438, 1358, 1806, 2349
HphI	GGTGA	6 cut(s)	537, 860, 974, 1187, 1439, 2115
Hpy166II	GTNNAC	6 cut(s)	256, 468, 1054, 1658, 2003, 2022
Hpy8I	GTNNAC	6 cut(s)	256, 468, 1054, 1658, 2003, 2022
HpyAV	CCTTC	6 cut(s)	24, 1313, 1619, 1664, 1957, 2136
HpyCH4III	ACNGT	9 cut(s)	209, 253, 368, 425, 556, 785, 1031, 1469, 1579
HpyCH4IV	ACGT	4 cut(s)	450, 1774, 2005, 2200
HpyF3I	CTNAG	8 cut(s)	595, 621, 722, 1266, 1587, 1650, 1723, 2025
HpySE526I	ACGT	4 cut(s)	450, 1774, 2005, 2200
Hsp92I	GRCGYC	2 cut(s)	54, 99
HspAI	GCGC	5 cut(s)	49, 76, 247, 290, 380
Kpn2I	TCCGGA	2 cut(s)	418, 437
Ksp22I	TGATCA	2 cut(s)	760, 1846
KspI	CCGCGG	1 cut(s)	28
Kzo9I	GATC	8 cut(s)	175, 415, 610, 760, 1201, 1439, 1628, 1846
LmnI	GCTCC	6 cut(s)	169, 378, 440, 440, 1912, 2351
LweI	GCATC	7 cut(s)	310, 568, 1308, 1420, 1444, 1562, 2220
MabI	ACCWGGT	1 cut(s)	2335
MaeI	CTAG	2 cut(s)	2343, 2354
MaeII	ACGT	4 cut(s)	450, 1774, 2005, 2200
MaeIII	GTNAC	4 cut(s)	454, 1062, 2099, 2121
MalI	GATC	8 cut(s)	177, 417, 612, 762, 1203, 1441, 1630, 1848
MbiI	CCGCTC	2 cut(s)	164, 443
MboI	GATC	8 cut(s)	175, 415, 610, 760, 1201, 1439, 1628, 1846
MflI	RGATCY	2 cut(s)	415, 1439
MhlI	GDGCHC	4 cut(s)	117, 333, 1094, 2011
MlyI	GAGTC	4 cut(s)	14, 125, 733, 1554
MmeI	TCCRAC	3 cut(s)	393, 727, 1175
Mph1103I	ATGCAT	2 cut(s)	636, 1301
MroI	TCCGGA	2 cut(s)	418, 437
MseI	TTAA	6 cut(s)	777, 830, 893, 924, 1922, 2280
MslI	CAYNNNNRTG	2 cut(s)	952, 963
MspA1I	CMGCKG	4 cut(s)	27, 869, 932, 1820
MspCI	CTTAAG	2 cut(s)	829, 923
MspI	CCGG	8 cut(s)	67, 259, 407, 419, 438, 1358, 1806, 2349
MspR9I	CCNGG	5 cut(s)	377, 1359, 1511, 1807, 2337
Mva1269I	GAATGC	1 cut(s)	1967
MvaI	CCWGG	3 cut(s)	377, 1511, 2337
MvnI	CGCG	5 cut(s)	27, 51, 78, 219, 290
NciI	CCSGG	2 cut(s)	1359, 1807
NcoI	CCATGG	1 cut(s)	1732
NdeII	GATC	8 cut(s)	175, 415, 610, 760, 1201, 1439, 1628, 1846
NmeAIII	GCCGAG	1 cut(s)	2250
NmuCI	GTSAC	3 cut(s)	454, 1062, 2121
NsbI	TGCGCA	1 cut(s)	248
NsiI	ATGCAT	2 cut(s)	636, 1301
NspI	RCATGY	3 cut(s)	634, 1366, 2188
PaeR7I	CTCGAG	2 cut(s)	293, 1223
PagI	TCATGA	1 cut(s)	802
PaqCI	CACCTGC	2 cut(s)	556, 2054
PceI	AGGCCT	1 cut(s)	2329
PcsI	WCGNNNNNNNCGW	5 cut(s)	93, 102, 123, 291, 748
PctI	GAATGC	1 cut(s)	1967
PfeI	GAWTC	4 cut(s)	853, 1157, 1460, 1495
Pfl23II	CGTACG	1 cut(s)	363
PflMI	CCANNNNNTGG	1 cut(s)	959
PleI	GAGTC	4 cut(s)	14, 125, 733, 1553
PpsI	GAGTC	4 cut(s)	14, 125, 733, 1553
Ppu21I	YACGTR	2 cut(s)	451, 1775
PpuMI	RGGWCCY	2 cut(s)	139, 199
PshAI	GACNNNNGTC	1 cut(s)	197
PshBI	ATTAAT	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	2 cut(s)	139, 199
Psp6I	CCWGG	3 cut(s)	375, 1509, 2335
PspFI	CCCAGC	1 cut(s)	2298
PspGI	CCWGG	3 cut(s)	375, 1509, 2335
PspLI	CGTACG	1 cut(s)	363
PspOMI	GGGCCC	1 cut(s)	329
PspPPI	RGGWCCY	2 cut(s)	139, 199
PspXI	VCTCGAGB	2 cut(s)	293, 1223
PstI	CTGCAG	1 cut(s)	1819
PstNI	CAGNNNCTG	2 cut(s)	382, 2294
PsuI	RGATCY	2 cut(s)	415, 1439
PvuII	CAGCTG	3 cut(s)	869, 932, 1820
RsaI	GTAC	7 cut(s)	365, 727, 1149, 1678, 1777, 2334, 2341
RsaNI	GTAC	7 cut(s)	364, 726, 1148, 1677, 1776, 2333, 2340
RseI	CAYNNNNRTG	2 cut(s)	952, 963
Rsr2I	CGGWCCG	1 cut(s)	421
RsrII	CGGWCCG	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	117
SacII	CCGCGG	1 cut(s)	28
SalI	GTCGAC	1 cut(s)	466
SaqAI	TTAA	6 cut(s)	777, 830, 893, 924, 1922, 2280
Sau3AI	GATC	8 cut(s)	175, 415, 610, 760, 1201, 1439, 1628, 1846
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	4 cut(s)	14, 125, 733, 1554
ScrFI	CCNGG	5 cut(s)	377, 1359, 1511, 1807, 2337
SduI	GDGCHC	4 cut(s)	117, 333, 1094, 2011
SexAI	ACCWGGT	1 cut(s)	2335
SfaNI	GCATC	7 cut(s)	310, 568, 1308, 1420, 1444, 1562, 2220
SfcI	CTRYAG	1 cut(s)	1815
Sfr274I	CTCGAG	2 cut(s)	293, 1223
Sfr303I	CCGCGG	1 cut(s)	28
SgrBI	CCGCGG	1 cut(s)	28
SinI	GGWCC	6 cut(s)	139, 199, 214, 421, 1197, 2033
SlaI	CTCGAG	2 cut(s)	293, 1223
SmiMI	CAYNNNNRTG	2 cut(s)	952, 963
SmlI	CTYRAG	4 cut(s)	293, 829, 923, 1223
SmoI	CTYRAG	4 cut(s)	293, 829, 923, 1223
SnaBI	TACGTA	1 cut(s)	1775
SseBI	AGGCCT	1 cut(s)	2329
SspI	AATATT	1 cut(s)	1348
SspMI	CTAG	2 cut(s)	2343, 2354
SstI	GAGCTC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	2329
StyD4I	CCNGG	5 cut(s)	375, 1357, 1509, 1805, 2335
StyI	CCWWGG	3 cut(s)	324, 1732, 1800
TaaI	ACNGT	9 cut(s)	209, 253, 368, 425, 556, 785, 1031, 1469, 1579
TaiI	ACGT	4 cut(s)	453, 1777, 2008, 2203
TaqI	TCGA	7 cut(s)	117, 204, 294, 467, 562, 742, 1224
TaqII	GACCGA	2 cut(s)	209, 1214
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	4 cut(s)	30, 315, 446, 586
TfiI	GAWTC	4 cut(s)	853, 1157, 1460, 1495
Tru1I	TTAA	6 cut(s)	777, 830, 893, 924, 1922, 2280
Tru9I	TTAA	6 cut(s)	777, 830, 893, 924, 1922, 2280
TscAI	CASTG	3 cut(s)	561, 770, 1054
TseFI	GTSAC	3 cut(s)	454, 1062, 2121
Tsp45I	GTSAC	3 cut(s)	454, 1062, 2121
TspDTI	ATGAA	6 cut(s)	503, 660, 1295, 1400, 1658, 1970
TspGWI	ACGGA	3 cut(s)	262, 453, 1165
TspRI	CASTG	3 cut(s)	561, 770, 1054
Van91I	CCANNNNNTGG	1 cut(s)	959
Vha464I	CTTAAG	2 cut(s)	829, 923
VpaK11BI	GGWCC	6 cut(s)	139, 199, 214, 421, 1197, 2033
VspI	ATTAAT	1 cut(s)	777
XagI	CCTNNNNNAGG	1 cut(s)	2334
XapI	RAATTY	6 cut(s)	60, 899, 1486, 1687, 1696, 1863
XceI	RCATGY	3 cut(s)	634, 1366, 2188
XhoI	CTCGAG	2 cut(s)	293, 1223
XmiI	GTMKAC	3 cut(s)	467, 1053, 1657
XspI	CTAG	2 cut(s)	2343, 2354
ZrmI	AGTACT	1 cut(s)	727
Zsp2I	ATGCAT	2 cut(s)	636, 1301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.