Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Forward (+)

57220625 .. 57227726

Gene Structure 7102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG386200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2397 bp

ATGCCAGCTTCCCCTTCCTTCCCATCTTCAGACGGGCGCGGCAAATGGAGGAAGCGAAAGCGGGACCCCCAAATTCGCCGCCGCCCGCGTGACGACGACGACGACGAGGACGACGACGCCGCCGCCGACGACAACAACAACAACAACGACCTCGACCACGACGACTCCGACCCTAGCGCCGCCGCCGCAGCACCCGATCCCGCCCCGCACGAGACCGAGGTCCTCGACGGTGGGCTCCGCCACAACGATTTCCCTCCCGTCGTTTTGCGCACCGTGAATAGGCCCCACTCCTCGGTTCTCGCGCTTGTGGCGGTCGAGCGGGCCAACCACATTAACTCCGCCTGCGACGGGAAGGGCCCGGTGAGTCCTCTGGTGTTGGAGAATGTGTCCCACGGCCAGCTTCAGGCCTTGTCCGCCGTCCCGGCCGATTGTCCGTCGTTGGATCAGGACCGTCCAGATGGCGCCAGTTCGGCTTATGTCGTTACGCCGCCGGCGATTATGGAAGGCCGCGGCGTTGTGAAGCGGTATGGGAGTAGAGTTCATGTGGTTCCAATGCACGCAGATTGGTTTTCACCGGCTACAGTGCATCGACTGGAGAGACAGGTGGTGCCACATTTTTTCTCAGGAAAATCACCAGAGTTTACTCCTGAGATGTACATGCAAAGTAGGAATGAAATTGTTGCCAAGTACATGGAAAACCCAGAGAAGAGGCTTACAGTTTCTGATTGCACAAAATTAACAAGCCATCTAAATACTGAAGATTTGACTCGAATAGTTCGGTTTCTTGATCACTGGGGAATTATCAATTACTCTGCTGCCGCACCAAGTCCTGAGCCTTGGAATGGTAATTCCTACTTAAGGGAGGAGCAAAATGGTGAGATTCATGTTCCATCAGCTGCGTTGAAGTCGATTGATAGTCTGATCAAATTTGACAAGCCCAGATGTAGGCTTAAGGCAGCTGATGTTTATAAGTCATTGTCCTGTCATGACGACGATGATGACACCTCTGATTTGGACAACAGAATTCGAAAACGTCTATGTGAAAATCATTGCAATTATTGTTCTTGTTCTCTTCCCAGTGTATGCTATCAGTCACAGAAGGAGGTTGATGTACTGCTCTGCTCTGACTGCTTCCATGAGGGAAGATATGTTGTGGGCCATTCAAGCATAGATTTCATACGAGTGGATTCAACAAAAGATTATGGCGATCCAGATGGGGAAAATTGGACTGATCAAGAAACCCTACTGCTGCTTGAGGCCATGGAAATCTATAATGAGAACTGGAATGAAATTGCAGAGCATGTTGGTACAAAGTCAAAAGCGCAATGCATACTTCATTTTCTACGTTTGCCTGTGGAGGATGGCCTGCTGGAAAATATTGAAGTTCCAAAGATGCCTCTGTCATCCAACTCGTCAGATAGAGATGATCATGGCGGATTTTATTCAACTTCAAATGGGAATTCAGCAGGATCCTGCCTACAAGATGGTGATTCTGAAAGCAGGTTCCCTTTTGCAAATTCTGGGAATCCAGTCATGTCCCTGGTTGCCTTTCTGGCCTCTTCTGTTGGGCCAAGAGTCGCTGCATCTTGTGCCCATGCAGCCTTGGCAGTGTTGTCTGAGGACAATGGCTTACCTGCTTCTGGAAGTAATTTGCAGGAAGGATCAGGAGGACATAGGATGAACTTGGAGAGCATGCATGGTCAAGGTGGCGCTCATAAAAATATTGCAAATTCAGTTCAGCAGAAGGATGAGAAATCAGCAGGACAAGGTTCTCGGGGTAAAAATGAGGCAGGGGTGACTCCAGTACCTGCAGAAAAAGTTAAAGCTGCTGCCAAAGCTGGCCTTGCTGCTGCTGCAATAAAAGCAAAATTGTTTGCTGATCATGAAGAACGGGAAATTCAGAGGTTATCTGCTAATATTGTAAATCATCAGTTGAAGAGATTGGAGCTGAAGTTAAAGCAGTTTGCAGAAGTGGAAACTTATCTAATGAAAGAATGTGAACAAGTGGAGAAGACAAGGCAGAGGATGGTTGCCGAACGTACCCGTCTTATATCAACTCGGTTTGGTGCTGCTGGAGTTGCTCCACCCATTAACTTAGCAGGTGTTGGTCCTTCCATGGCCAATAATAATTCTGGTAACAATAGGCAACAAATTATGCCATCTTCGGCTTCCCAGCCAAGCGTATCCGGATACAGCAACAGCCAACCAGTCCATTCTCACATGCCTTTCATGCCACAACAATCAATGCTAGGATTGGGACCGAGGATGCCCTTGGCGTCCATACAAGCCTCCTCATCAGCTCCAAATGCCATGTTTAATTCCCCAGGGACTGGTCGGCCGACTCTAAGTCATCCGATGCTGAGGCCTGTACCGGGTACTAGCTCTGGTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

798

Amino Acids

86.82

Weight (kDa)

5.77

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	191 - 270	1.9e-19	SWIRM domain
Myb_DNA-binding	PF00249	407 - 449	4e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	409 - 451	3.7e-08	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	613 - 689	9.4e-25	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	969
AarI	CACCTGC	1 cut(s)	2090
Acc16I	TGCGCA	1 cut(s)	269
Acc36I	ACCTGC	4 cut(s)	1491, 1642, 1816, 2090
AccB1I	GGYRCC	2 cut(s)	461, 607
AccB7I	CCANNNNNTGG	1 cut(s)	2330
AccBSI	CCGCTC	1 cut(s)	319
AccII	CGCG	4 cut(s)	39, 88, 302, 510
AccIII	TCCGGA	1 cut(s)	2186
AclWI	GGATC	6 cut(s)	191, 450, 1202, 1464, 1477, 1669
AcoI	YGGCCR	4 cut(s)	394, 423, 2118, 2336
AcsI	RAATTY	7 cut(s)	72, 926, 1023, 1459, 1516, 1729, 1896
AcuI	CTGAAG	4 cut(s)	12, 386, 777, 1970
AcyI	GRCGYC	3 cut(s)	117, 462, 2276
AfaI	GTAC	8 cut(s)	656, 689, 1113, 1309, 1806, 2041, 2370, 2377
AflII	CTTAAG	2 cut(s)	856, 950
AgsI	TTSAA	7 cut(s)	904, 1164, 1191, 1382, 1446, 1452, 1936
AhdI	GACNNNNNGTC	1 cut(s)	2346
AjnI	CCWGG	2 cut(s)	1539, 2323
AluBI	AGCT	9 cut(s)	8, 400, 896, 959, 1826, 1838, 1948, 2300, 2382
AluI	AGCT	9 cut(s)	8, 400, 896, 959, 1826, 1838, 1948, 2300, 2382
Alw26I	GTCTC	2 cut(s)	206, 592
AlwI	GGATC	6 cut(s)	191, 450, 1202, 1464, 1477, 1669
AlwNI	CAGNNNCTG	3 cut(s)	722, 1808, 2330
Ama87I	CYCGRG	1 cut(s)	1773
Aor13HI	TCCGGA	1 cut(s)	2186
ApaI	GGGCCC	1 cut(s)	359
ApoI	RAATTY	7 cut(s)	72, 926, 1023, 1459, 1516, 1729, 1896
AspLEI	GCGC	7 cut(s)	39, 179, 270, 304, 464, 1324, 1712
AsuC2I	CCSGG	3 cut(s)	359, 422, 2373
AsuHPI	GGTGA	6 cut(s)	373, 564, 624, 887, 1499, 1807
AsuII	TTCGAA	1 cut(s)	1027
AvaI	CYCGRG	1 cut(s)	1773
AvaII	GGWCC	5 cut(s)	64, 220, 448, 2108, 2258
BaeGI	GKGCMC	2 cut(s)	359, 1594
BaeI	ACNNNNGTAYC	2 cut(s)	1788, 1821
BalI	TGGCCA	1 cut(s)	2120
BamHI	GGATCC	1 cut(s)	1469
BanI	GGYRCC	2 cut(s)	461, 607
BanII	GRGCYC	2 cut(s)	237, 359
BauI	CACGAG	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	2018
BbvCI	CCTCAGC	1 cut(s)	2360
BccI	CCATC	9 cut(s)	31, 452, 753, 898, 1208, 1355, 1478, 2020, 2167
BceAI	ACGGC	2 cut(s)	401, 409
BciT130I	CCWGG	2 cut(s)	1541, 2325
BciVI	GTATCC	2 cut(s)	2183, 2194
BclI	TGATCA	5 cut(s)	787, 921, 1231, 1426, 1879
BcnI	CCSGG	3 cut(s)	359, 422, 2373
BcoDI	GTCTC	2 cut(s)	206, 592
BfaI	CTAG	3 cut(s)	174, 2249, 2379
BfmI	CTRYAG	2 cut(s)	579, 1809
BfoI	RGCGCY	3 cut(s)	180, 465, 1713
BfrI	CTTAAG	2 cut(s)	856, 950
BfuAI	ACCTGC	4 cut(s)	1491, 1642, 1816, 2090
BfuI	GTATCC	2 cut(s)	2183, 2194
BglI	GCCNNNNNGGC	3 cut(s)	422, 470, 1553
Bme1390I	CCNGG	5 cut(s)	359, 422, 1541, 2325, 2373
Bme18I	GGWCC	5 cut(s)	64, 220, 448, 2108, 2258
BmeRI	GACNNNNNGTC	1 cut(s)	2346
BmeT110I	CYCGRG	1 cut(s)	1773
BmrFI	CCNGG	5 cut(s)	359, 422, 1541, 2325, 2373
BmrI	ACTGGG	2 cut(s)	802, 1071
BmsI	GCATC	5 cut(s)	595, 1383, 1592, 2256, 2346
BmuI	ACTGGG	2 cut(s)	802, 1071
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	2018
BpmI	CTGGAG	3 cut(s)	614, 1785, 2094
Bpu10I	CCTNAGC	2 cut(s)	831, 2360
Bpu14I	TTCGAA	1 cut(s)	1027
BpuEI	CTTGAG	1 cut(s)	1274
BpuMI	CCSGG	3 cut(s)	359, 422, 2373
BsaHI	GRCGYC	3 cut(s)	117, 462, 2276
BsaI	GGTCTC	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	2186
BsaXI	ACNNNNNCTCC	8 cut(s)	149, 179, 320, 350, 371, 401, 1937, 1967
Bse118I	RCCGGY	2 cut(s)	490, 574
Bse1I	ACTGG	9 cut(s)	465, 597, 797, 1077, 1286, 1529, 1802, 2207, 2335
Bse3DI	GCAATG	2 cut(s)	1048, 1331
BseAI	TCCGGA	1 cut(s)	2186
BseBI	CCWGG	2 cut(s)	1541, 2325
BseGI	GGATG	7 cut(s)	1366, 1403, 1683, 1753, 2031, 2271, 2350
BseMI	GCAATG	2 cut(s)	1048, 1331
BseMII	CTCAG	5 cut(s)	636, 639, 822, 1608, 2351
BseNI	ACTGG	9 cut(s)	465, 597, 797, 1077, 1286, 1529, 1802, 2207, 2335
BseRI	GAGGAG	3 cut(s)	280, 878, 2281
BseSI	GKGCMC	2 cut(s)	359, 1594
BseX3I	CGGCCG	2 cut(s)	423, 2336
BseYI	CCCAGC	1 cut(s)	2172
Bsh1236I	CGCG	4 cut(s)	39, 88, 302, 510
Bsh1285I	CGRYCG	3 cut(s)	315, 426, 2339
BshNI	GGYRCC	2 cut(s)	461, 607
BsiEI	CGRYCG	3 cut(s)	315, 426, 2339
BsiHKCI	CYCGRG	1 cut(s)	1773
BsiSI	CCGG	6 cut(s)	359, 422, 491, 575, 2187, 2372
BslFI	GGGAC	6 cut(s)	77, 373, 404, 1522, 2271, 2341
BsmAI	GTCTC	2 cut(s)	206, 592
BsmFI	GGGAC	6 cut(s)	77, 373, 404, 1522, 2271, 2341
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	1773
Bsp119I	TTCGAA	1 cut(s)	1027
Bsp120I	GGGCCC	1 cut(s)	355
Bsp1286I	GDGCHC	3 cut(s)	237, 359, 1594
Bsp13I	TCCGGA	1 cut(s)	2186
Bsp1407I	TGTACA	1 cut(s)	654
Bsp19I	CCATGG	2 cut(s)	1260, 2115
BspCNI	CTCAG	5 cut(s)	635, 640, 823, 1609, 2352
BspEI	TCCGGA	1 cut(s)	2186
BspFNI	CGCG	4 cut(s)	39, 88, 302, 510
BspHI	TCATGA	2 cut(s)	985, 1882
BspMAI	CTGCAG	1 cut(s)	1813
BspMI	ACCTGC	4 cut(s)	1491, 1642, 1816, 2090
BspPI	GGATC	6 cut(s)	191, 450, 1202, 1464, 1477, 1669
BspT104I	TTCGAA	1 cut(s)	1027
BspT107I	GGYRCC	2 cut(s)	461, 607
BspTI	CTTAAG	2 cut(s)	856, 950
BspTNI	GGTCTC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	319
BsrDI	GCAATG	2 cut(s)	1048, 1331
BsrFI	RCCGGY	2 cut(s)	490, 574
BsrGI	TGTACA	1 cut(s)	654
BsrI	ACTGG	9 cut(s)	465, 597, 797, 1077, 1286, 1529, 1802, 2207, 2335
BssAI	RCCGGY	2 cut(s)	490, 574
BssNI	GRCGYC	3 cut(s)	117, 462, 2276
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	5 cut(s)	836, 1260, 1602, 2115, 2271
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	2 cut(s)	1541, 2325
Bst4CI	ACNGT	5 cut(s)	230, 274, 452, 583, 718
Bst6I	CTCTTC	4 cut(s)	701, 1077, 1564, 1931
BstACI	GRCGYC	3 cut(s)	117, 462, 2276
BstAFI	CTTAAG	2 cut(s)	856, 950
BstAPI	GCANNNNNTGC	1 cut(s)	1589
BstAUI	TGTACA	1 cut(s)	654
BstBI	TTCGAA	1 cut(s)	1027
BstDEI	CTNAG	7 cut(s)	622, 648, 831, 1617, 2095, 2345, 2360
BstDSI	CCRYGG	4 cut(s)	391, 508, 1260, 2115
BstENI	CCTNNNNNAGG	1 cut(s)	856
BstF5I	GGATG	7 cut(s)	1366, 1403, 1683, 1753, 2031, 2271, 2350
BstFNI	CGCG	4 cut(s)	39, 88, 302, 510
BstH2I	RGCGCY	3 cut(s)	180, 465, 1713
BstHHI	GCGC	7 cut(s)	39, 179, 270, 304, 464, 1324, 1712
BstMAI	GTCTC	2 cut(s)	206, 592
BstMCI	CGRYCG	3 cut(s)	315, 426, 2339
BstNI	CCWGG	2 cut(s)	1541, 2325
BstNSI	RCATGY	4 cut(s)	661, 1304, 1696, 2224
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	5 cut(s)	357, 420, 1539, 2323, 2371
BstSFI	CTRYAG	2 cut(s)	579, 1809
BstSLI	GKGCMC	2 cut(s)	359, 1594
BstUI	CGCG	4 cut(s)	39, 88, 302, 510
BstV2I	GAAGAC	1 cut(s)	2018
BstX2I	RGATCY	1 cut(s)	1469
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	1469
BstZI	CGGCCG	2 cut(s)	423, 2336
BsuI	GTATCC	2 cut(s)	2183, 2194
BtgI	CCRYGG	4 cut(s)	391, 508, 1260, 2115
BtsCI	GGATG	7 cut(s)	1366, 1403, 1683, 1753, 2031, 2271, 2350
BtsI	GCAGTG	1 cut(s)	1614
BtsIMutI	CAGTG	4 cut(s)	588, 790, 1084, 1614
BveI	ACCTGC	4 cut(s)	1491, 1642, 1816, 2090
CaiI	CAGNNNCTG	3 cut(s)	722, 1808, 2330
CciI	TCATGA	2 cut(s)	985, 1882
CfoI	GCGC	7 cut(s)	39, 179, 270, 304, 464, 1324, 1712
Cfr10I	RCCGGY	2 cut(s)	490, 574
Cfr42I	CCGCGG	1 cut(s)	511
CseI	GACGC	2 cut(s)	125, 2265
Csp6I	GTAC	8 cut(s)	655, 688, 1112, 1308, 1805, 2040, 2369, 2376
CviQI	GTAC	8 cut(s)	655, 688, 1112, 1308, 1805, 2040, 2369, 2376
DdeI	CTNAG	7 cut(s)	622, 648, 831, 1617, 2095, 2345, 2360
DinI	GGCGCC	1 cut(s)	463
DriI	GACNNNNNGTC	1 cut(s)	2346
EaeI	YGGCCR	4 cut(s)	394, 423, 2118, 2336
EagI	CGGCCG	2 cut(s)	423, 2336
Eam1104I	CTCTTC	4 cut(s)	701, 1077, 1564, 1931
Eam1105I	GACNNNNNGTC	1 cut(s)	2346
EarI	CTCTTC	4 cut(s)	701, 1077, 1564, 1931
EciI	GGCGGA	4 cut(s)	227, 328, 403, 1449
EclXI	CGGCCG	2 cut(s)	423, 2336
Eco130I	CCWWGG	5 cut(s)	836, 1260, 1602, 2115, 2271
Eco147I	AGGCCT	2 cut(s)	407, 2365
Eco24I	GRGCYC	2 cut(s)	237, 359
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	5 cut(s)	64, 220, 448, 2108, 2258
Eco52I	CGGCCG	2 cut(s)	423, 2336
Eco57I	CTGAAG	4 cut(s)	12, 386, 777, 1970
Eco88I	CYCGRG	1 cut(s)	1773
EcoNI	CCTNNNNNAGG	1 cut(s)	856
EcoO109I	RGGNCCY	4 cut(s)	64, 220, 282, 355
EcoRI	GAATTC	2 cut(s)	1023, 1459
EcoRII	CCWGG	2 cut(s)	1539, 2323
EcoT14I	CCWWGG	5 cut(s)	836, 1260, 1602, 2115, 2271
EcoT22I	ATGCAT	2 cut(s)	1331, 1698
EcoT38I	GRGCYC	2 cut(s)	237, 359
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
ErhI	CCWWGG	5 cut(s)	836, 1260, 1602, 2115, 2271
FalI	AAGNNNNNCTT	2 cut(s)	1827, 1859
FaqI	GGGAC	6 cut(s)	77, 373, 404, 1522, 2271, 2341
FauI	CCCGC	5 cut(s)	54, 93, 208, 213, 312
FbaI	TGATCA	5 cut(s)	787, 921, 1231, 1426, 1879
FokI	GGATG	7 cut(s)	1373, 1390, 1690, 1760, 2038, 2278, 2337
FriOI	GRGCYC	2 cut(s)	237, 359
FspBI	CTAG	3 cut(s)	174, 2249, 2379
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	7 cut(s)	38, 178, 269, 303, 463, 1323, 1711
GsaI	CCCAGC	1 cut(s)	2176
GsuI	CTGGAG	3 cut(s)	614, 1785, 2094
HaeII	RGCGCY	3 cut(s)	180, 465, 1713
HapII	CCGG	6 cut(s)	359, 422, 491, 575, 2187, 2372
HgaI	GACGC	2 cut(s)	125, 2265
HhaI	GCGC	7 cut(s)	39, 179, 270, 304, 464, 1324, 1712
Hin1I	GRCGYC	3 cut(s)	117, 462, 2276
Hin6I	GCGC	7 cut(s)	37, 177, 268, 302, 462, 1322, 1710
HinP1I	GCGC	7 cut(s)	37, 177, 268, 302, 462, 1322, 1710
HpaII	CCGG	6 cut(s)	359, 422, 491, 575, 2187, 2372
HphI	GGTGA	6 cut(s)	373, 564, 624, 887, 1499, 1807
Hpy166II	GTNNAC	2 cut(s)	642, 2000
Hpy8I	GTNNAC	2 cut(s)	642, 2000
HpyAV	CCTTC	8 cut(s)	24, 28, 346, 497, 1093, 1652, 1738, 2121
HpyCH4III	ACNGT	5 cut(s)	230, 274, 452, 583, 718
HpyCH4IV	ACGT	3 cut(s)	1033, 1345, 2038
HpyF3I	CTNAG	7 cut(s)	622, 648, 831, 1617, 2095, 2345, 2360
HpySE526I	ACGT	3 cut(s)	1033, 1345, 2038
Hsp92I	GRCGYC	3 cut(s)	117, 462, 2276
HspAI	GCGC	7 cut(s)	37, 177, 268, 302, 462, 1322, 1710
KasI	GGCGCC	1 cut(s)	461
KflI	GGGWCCC	1 cut(s)	64
Kpn2I	TCCGGA	1 cut(s)	2186
KroI	GCCGGC	1 cut(s)	490
KroNI	GCCGGC	1 cut(s)	492
Ksp22I	TGATCA	5 cut(s)	787, 921, 1231, 1426, 1879
KspI	CCGCGG	1 cut(s)	511
LmnI	GCTCC	5 cut(s)	240, 865, 1945, 2086, 2305
LweI	GCATC	5 cut(s)	595, 1383, 1592, 2256, 2346
MaeI	CTAG	3 cut(s)	174, 2249, 2379
MaeII	ACGT	3 cut(s)	1033, 1345, 2038
MaeIII	GTNAC	5 cut(s)	89, 481, 1092, 1795, 2135
MbiI	CCGCTC	1 cut(s)	319
MflI	RGATCY	1 cut(s)	1469
MhlI	GDGCHC	3 cut(s)	237, 359, 1594
MlsI	TGGCCA	1 cut(s)	2120
MluNI	TGGCCA	1 cut(s)	2120
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	6 cut(s)	158, 373, 760, 1584, 1792, 2335
MmeI	TCCRAC	4 cut(s)	192, 357, 420, 1431
Mox20I	TGGCCA	1 cut(s)	2120
Mph1103I	ATGCAT	2 cut(s)	1331, 1698
MreI	CGCCGGCG	1 cut(s)	490
MroI	TCCGGA	1 cut(s)	2186
MroNI	GCCGGC	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	2120
MseI	TTAA	8 cut(s)	333, 737, 857, 951, 1821, 1955, 2091, 2316
MslI	CAYNNNNRTG	1 cut(s)	1181
Msp20I	TGGCCA	1 cut(s)	2120
MspA1I	CMGCKG	3 cut(s)	510, 896, 959
MspCI	CTTAAG	2 cut(s)	856, 950
MspI	CCGG	6 cut(s)	359, 422, 491, 575, 2187, 2372
MspR9I	CCNGG	5 cut(s)	359, 422, 1541, 2325, 2373
MvaI	CCWGG	2 cut(s)	1541, 2325
MvnI	CGCG	4 cut(s)	39, 88, 302, 510
NaeI	GCCGGC	1 cut(s)	492
NarI	GGCGCC	1 cut(s)	462
NciI	CCSGG	3 cut(s)	359, 422, 2373
NcoI	CCATGG	2 cut(s)	1260, 2115
NgoMIV	GCCGGC	1 cut(s)	490
NmuCI	GTSAC	3 cut(s)	89, 1092, 1795
NsbI	TGCGCA	1 cut(s)	269
NsiI	ATGCAT	2 cut(s)	1331, 1698
NspI	RCATGY	4 cut(s)	661, 1304, 1696, 2224
NspV	TTCGAA	1 cut(s)	1027
PaeI	GCATGC	1 cut(s)	1696
PagI	TCATGA	2 cut(s)	985, 1882
PaqCI	CACCTGC	1 cut(s)	2090
PasI	CCCWGGG	1 cut(s)	2324
PceI	AGGCCT	2 cut(s)	407, 2365
PcsI	WCGNNNNNNNCGW	8 cut(s)	99, 102, 108, 111, 123, 159, 165, 491
PdiI	GCCGGC	1 cut(s)	492
PfeI	GAWTC	4 cut(s)	880, 1187, 1490, 1525
PflMI	CCANNNNNTGG	1 cut(s)	2330
PleI	GAGTC	6 cut(s)	158, 372, 760, 1583, 1792, 2335
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	6 cut(s)	158, 372, 760, 1583, 1792, 2335
PpuMI	RGGWCCY	2 cut(s)	64, 220
PshAI	GACNNNNGTC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	969
Psp5II	RGGWCCY	2 cut(s)	64, 220
Psp6I	CCWGG	2 cut(s)	1539, 2323
PspFI	CCCAGC	1 cut(s)	2172
PspGI	CCWGG	2 cut(s)	1539, 2323
PspOMI	GGGCCC	1 cut(s)	355
PspPPI	RGGWCCY	2 cut(s)	64, 220
PstI	CTGCAG	1 cut(s)	1813
PstNI	CAGNNNCTG	3 cut(s)	722, 1808, 2330
PsuI	RGATCY	1 cut(s)	1469
PvuII	CAGCTG	2 cut(s)	896, 959
RsaI	GTAC	8 cut(s)	656, 689, 1113, 1309, 1806, 2041, 2370, 2377
RsaNI	GTAC	8 cut(s)	655, 688, 1112, 1308, 1805, 2040, 2369, 2376
RseI	CAYNNNNRTG	1 cut(s)	1181
SacII	CCGCGG	1 cut(s)	511
SaqAI	TTAA	8 cut(s)	333, 737, 857, 951, 1821, 1955, 2091, 2316
SchI	GAGTC	6 cut(s)	158, 373, 760, 1584, 1792, 2335
ScrFI	CCNGG	5 cut(s)	359, 422, 1541, 2325, 2373
SduI	GDGCHC	3 cut(s)	237, 359, 1594
SfaNI	GCATC	5 cut(s)	595, 1383, 1592, 2256, 2346
SfcI	CTRYAG	2 cut(s)	579, 1809
SfoI	GGCGCC	1 cut(s)	463
Sfr303I	CCGCGG	1 cut(s)	511
SfuI	TTCGAA	1 cut(s)	1027
SgrAI	CRCCGGYG	1 cut(s)	490
SgrBI	CCGCGG	1 cut(s)	511
SinI	GGWCC	5 cut(s)	64, 220, 448, 2108, 2258
SmiMI	CAYNNNNRTG	1 cut(s)	1181
SmlI	CTYRAG	3 cut(s)	856, 950, 1253
SmoI	CTYRAG	3 cut(s)	856, 950, 1253
SphI	GCATGC	1 cut(s)	1696
SseBI	AGGCCT	2 cut(s)	407, 2365
SspDI	GGCGCC	1 cut(s)	461
SspI	AATATT	3 cut(s)	1378, 1723, 1918
SspMI	CTAG	3 cut(s)	174, 2249, 2379
StuI	AGGCCT	2 cut(s)	407, 2365
StyD4I	CCNGG	5 cut(s)	357, 420, 1539, 2323, 2371
StyI	CCWWGG	5 cut(s)	836, 1260, 1602, 2115, 2271
TaaI	ACNGT	5 cut(s)	230, 274, 452, 583, 718
TaiI	ACGT	3 cut(s)	1036, 1348, 2041
TaqI	TCGA	7 cut(s)	153, 225, 315, 589, 769, 908, 1027
TaqII	GACCGA	2 cut(s)	230, 2275
TatI	WGTACW	3 cut(s)	654, 687, 1111
TfiI	GAWTC	4 cut(s)	880, 1187, 1490, 1525
Tru1I	TTAA	8 cut(s)	333, 737, 857, 951, 1821, 1955, 2091, 2316
Tru9I	TTAA	8 cut(s)	333, 737, 857, 951, 1821, 1955, 2091, 2316
TscAI	CASTG	4 cut(s)	588, 797, 1084, 1614
TseFI	GTSAC	3 cut(s)	89, 1092, 1795
Tsp45I	GTSAC	3 cut(s)	89, 1092, 1795
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	4 cut(s)	588, 797, 1084, 1614
Van91I	CCANNNNNTGG	1 cut(s)	2330
Vha464I	CTTAAG	2 cut(s)	856, 950
VpaK11BI	GGWCC	5 cut(s)	64, 220, 448, 2108, 2258
XagI	CCTNNNNNAGG	1 cut(s)	856
XapI	RAATTY	7 cut(s)	72, 926, 1023, 1459, 1516, 1729, 1896
XceI	RCATGY	4 cut(s)	661, 1304, 1696, 2224
XspI	CTAG	3 cut(s)	174, 2249, 2379
Zsp2I	ATGCAT	2 cut(s)	1331, 1698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.