Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Forward (+)

4849493 .. 4858271

Gene Structure 8779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1030000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2382 bp

ATGTCAGCTTCTCCTTCAGACTCACACGGCAAATGGAGGAAGCGAAAGCGCGACCCCCAAATTCGCCGGAACAAGCGCGAGGACGACGACGACGAAGACGACGACGCCTGTGCCGCCGCCGACGACGACAACGAGCTCGACCCGAACGACGACTCGGAGGACCCCCAACATAACCCCCCATCCGCTGCAGAACCCGATCCCGCCCCTCACGAGACCGAGGTCCTGGACGGTGGGGTCCGCGTCAGTGACTTTCCTCCCGTCGTTTTGCGCACCGTCAACCGGCCCCACTCCTCCGTTCTTGCCCTCGTCGCGCTCGAGCGAGGCAATCATTCCGGCGGGGACACCAAGGGGCCCGCCAGCCCCATTTTATTGGAGAATGTGTCGTACGGTCAGCTCCAGGCGCTGTCCGCCGTGCCTGCCGATAGTCCGGCGCTCGATCCGGACCGTGCAGATGGCTCCGTGGCGGCTTACGTGGTCACTCCGCCTTCGATTATGGAAGGCCACGGCGTTGTGAAGCGGTTTGGGAACAGAGTTCATGTGGTTCCAATGCACGCAGATTGGTTTTTACCTGCCACAGTGCATCGATTGGAGAGACAGGTGGTGCCGCATTTTTTCTCAGGAAAATCATTAGATCATACTCCTGAGCTATACATGCATTGTAGGAATGAAATTGTTGCCAAATACATGGAAAATCCAGCGAAGAGGCTTGCATTTTCTGATTTTTCACAATTATCTGGTCGTCTAAGTACTGAAGATTTGACTCGAATAATCCGTTTTCTTGATCACTGGGGAATTATCAATTACTGTGCTGAAGCACCCAGTCATGAGCTGTGGAATGGCAGTTCCTACTTAAGGGAGGAGGTAAATGGTGAGATTCAAGTGCAATCAGCTGATCTTAAGTCCATTGATAGTTTAATCAAATTTGACAAGCCCAGATGTAGGCTCAAGGCAGCTGAAGTTTATTCGTCATTGCCATGTCATGATGGTGATGATGTCTCTGATTTGGACAACACACTTCGGAAGCGTCTATCTGAAAACCATTGCAATTACTGTTCTTGTTCTCTTCCTAATGTATACTATCAGTCACAGAAGGAGGTTGATGTACTGCTGTGCTCTAATTGCTTCCATGAGGGAAGATATGTTGTTGGTCATTCAAGCATAGATTTCATAAGGATGGATTCAACGAAAGATTATGGTGATCTGGATGGGGAAAGTTGGACTGCTCAAGAAACCTTACTGCTGCTCGAGGCAATGGAAATACACAATGAGAACTGGAATGAAATTGCTGAGTATGTTGGTTCAAAGTCAAAAGCACAATGCATCCTTCATTTTCTTCGTTTGCCTGTGGAGGATGGCCTGCTTGAAAATATTGAAGTTCCGGGCATGTCCCTGTCTTCCAATTCGTCGGATAGAGATGGTCATGGAGGATTTCATTCAAGTTCAAATGGGGATGCAGCAGGATCCTGCCTACAAGATGCTGATTCTGATAGTAGGTTCCCTTTCGCGAATTCTGGGAATCCAGTCATGGCCATGGTTTCATTTCTGGCCTCCTCTGTTGGGCCAAGAGTTGCTGCATCCTGTGCCCATGCAGCCTTGACTGTATTTTCTGAGGATAATGGTGTATCTGCCTCTGCAAGTATTATGGAAGGATCAGGCCATAGGACGAACTCTGAGAATATACAAGGTAGAGAAGGTGGTGCTCATGGAAATTCTGCAAATTCACTTCAGCAAAAGGAAAAGAACTCAGCAGCTCATGGTTCTTGGGGTCAAAATGAGGCAGGGGTAATTCCAATACCGGCAGAGAAAGTTAAAGCTGCTGCCAAAGCTGGCCTTGCTGCAGCTGCACTAAAGGCAAAATTGTTTGCTGATCACGAAGAACGGGAAATTCAGAGGCTATCTGCTAATATTATAAATCATCAGTTGAAGAGACTGGAGCTGAAGTTAAAGCAGTTTGCAGAAGTGGAAACCTTCCTAATGAAAGAATGTGAACAAATGGAGAAGACAAGGCAGAGGATGGTTAGTGAACGTGCCCGGATCATGTCAACTCAGTTTAGACCTGCTGGAGCTTCGCCCATGAGTTCAGCAGGTGCTGGTCCTTCCATGTCCAATAATAACATTGGTAACAATAGGCAACAGATTATGTCACCTTCAGGTTCACAGCCAAGCATATCAGGATACAGCAACAACCAACCAGTCCATCCCCGCATGCCATTCATGCCACGTCAACCAATGTTAGGGTTGGGGCCGAGGATACCCTTAACATCCATACAGTCATCCTCAGCAGCTCCAAATGCCATGTTTAATTCCGCAGGGACTGCCCAGTCGACGTTAAATCATCCATTGTTGAGGCCTGTACCAGGTACTAGCTCCAGTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

794

Amino Acids

86.37

Weight (kDa)

5.56

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	191 - 268	5.8e-18	SWIRM domain
Myb_DNA-binding	PF00249	405 - 446	8.4e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	406 - 448	5.6e-07	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	609 - 684	2.8e-24	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1910
AarI	CACCTGC	1 cut(s)	2075
AasI	GACNNNNNNGTC	2 cut(s)	233, 2320
Acc16I	TGCGCA	1 cut(s)	269
Acc36I	ACCTGC	3 cut(s)	577, 2065, 2075
AccB1I	GGYRCC	1 cut(s)	601
AccI	GTMKAC	2 cut(s)	1074, 2324
AccII	CGCG	5 cut(s)	51, 78, 240, 311, 1505
AccIII	TCCGGA	1 cut(s)	439
AclWI	GGATC	6 cut(s)	191, 431, 1455, 1468, 1657, 2042
AcoI	YGGCCR	1 cut(s)	1527
AcsI	RAATTY	6 cut(s)	60, 920, 1507, 1708, 1717, 1884
AcuI	CTGAAG	6 cut(s)	771, 831, 975, 1709, 1958, 2133
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	5 cut(s)	386, 748, 1104, 2355, 2362
AfiI	CCNNNNNNNGG	6 cut(s)	279, 852, 939, 1557, 2234, 2357
AflII	CTTAAG	2 cut(s)	850, 896
AgsI	TTSAA	9 cut(s)	878, 1155, 1182, 1302, 1364, 1373, 1437, 1443, 1924
AjiI	CACGTC	1 cut(s)	2222
AjnI	CCWGG	3 cut(s)	222, 396, 2356
AloI	GAACNNNNNNTCC	2 cut(s)	826, 858
Alw21I	GWGCWC	3 cut(s)	138, 1115, 1702
Alw26I	GTCTC	4 cut(s)	206, 586, 1000, 1921
AlwI	GGATC	6 cut(s)	191, 431, 1455, 1468, 1657, 2042
AlwNI	CAGNNNCTG	3 cut(s)	403, 2090, 2315
Ama87I	CYCGRG	2 cut(s)	314, 1244
Aor13HI	TCCGGA	1 cut(s)	439
ApaI	GGGCCC	1 cut(s)	354
ApoI	RAATTY	6 cut(s)	60, 920, 1507, 1708, 1717, 1884
AspLEI	GCGC	6 cut(s)	51, 78, 270, 313, 403, 433
AsuC2I	CCSGG	2 cut(s)	1380, 2032
AsuHPI	GGTGA	4 cut(s)	881, 998, 1208, 2136
AvaI	CYCGRG	2 cut(s)	314, 1244
AvaII	GGWCC	5 cut(s)	160, 220, 235, 442, 2093
BaeGI	GKGCMC	3 cut(s)	354, 1585, 2032
BalI	TGGCCA	1 cut(s)	1529
BamHI	GGATCC	1 cut(s)	1460
BanI	GGYRCC	1 cut(s)	601
BanII	GRGCYC	2 cut(s)	138, 354
BauI	CACGAG	1 cut(s)	209
BbsI	GAAGAC	3 cut(s)	102, 1386, 2006
Bbv12I	GWGCWC	3 cut(s)	138, 1115, 1702
BbvCI	CCTCAGC	1 cut(s)	2278
BccI	CCATC	9 cut(s)	187, 446, 977, 1168, 1199, 1346, 1409, 2008, 2205
BceAI	ACGGC	3 cut(s)	43, 395, 520
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	3 cut(s)	224, 398, 2358
BciVI	GTATCC	2 cut(s)	2168, 2244
BclI	TGATCA	2 cut(s)	781, 1867
BcnI	CCSGG	2 cut(s)	1380, 2032
BcoDI	GTCTC	4 cut(s)	206, 586, 1000, 1921
BfaI	CTAG	1 cut(s)	2364
BfmI	CTRYAG	2 cut(s)	186, 1836
BfoI	RGCGCY	2 cut(s)	404, 434
BfrI	CTTAAG	2 cut(s)	850, 896
BfuAI	ACCTGC	3 cut(s)	577, 2065, 2075
BfuI	GTATCC	2 cut(s)	2168, 2244
BmcAI	AGTACT	1 cut(s)	748
Bme1390I	CCNGG	5 cut(s)	224, 398, 1380, 2032, 2358
Bme18I	GGWCC	5 cut(s)	160, 220, 235, 442, 2093
BmeT110I	CYCGRG	2 cut(s)	314, 1244
BmgBI	CACGTC	1 cut(s)	2222
BmrFI	CCNGG	5 cut(s)	224, 398, 1380, 2032, 2358
BmrI	ACTGGG	3 cut(s)	796, 813, 2314
BmsI	GCATC	5 cut(s)	589, 1329, 1441, 1465, 1583
BmuI	ACTGGG	3 cut(s)	796, 813, 2314
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	3 cut(s)	102, 1386, 2006
BpmI	CTGGAG	4 cut(s)	380, 1952, 2082, 2353
Bpu10I	CCTNAGC	2 cut(s)	642, 2278
BpuEI	CTTGAG	2 cut(s)	929, 1209
BpuMI	CCSGG	2 cut(s)	1380, 2032
Bsa29I	ATCGAT	1 cut(s)	583
BsaAI	YACGTR	1 cut(s)	472
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	6 cut(s)	216, 345, 459, 502, 1530, 2246
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	4 cut(s)	365, 395, 1925, 1955
Bsc4I	CCNNNNNNNGG	6 cut(s)	279, 852, 939, 1557, 2234, 2357
Bse118I	RCCGGY	2 cut(s)	279, 1795
Bse1I	ACTGG	8 cut(s)	791, 819, 1277, 1520, 1935, 2192, 2320, 2370
Bse3DI	GCAATG	3 cut(s)	968, 1039, 1257
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	3 cut(s)	224, 398, 2358
BseCI	ATCGAT	1 cut(s)	583
BseDI	CCNNGG	6 cut(s)	216, 345, 459, 502, 1530, 2246
BseLI	CCNNNNNNNGG	6 cut(s)	279, 852, 939, 1557, 2234, 2357
BseMI	GCAATG	3 cut(s)	968, 1039, 1257
BseMII	CTCAG	8 cut(s)	630, 633, 1278, 1599, 1662, 1758, 2060, 2292
BseNI	ACTGG	8 cut(s)	791, 819, 1277, 1520, 1935, 2192, 2320, 2370
BseRI	GAGGAG	3 cut(s)	280, 872, 1540
BseSI	GKGCMC	3 cut(s)	354, 1585, 2032
BsgI	GTGCAG	2 cut(s)	468, 1827
Bsh1236I	CGCG	5 cut(s)	51, 78, 240, 311, 1505
BshNI	GGYRCC	1 cut(s)	601
BshVI	ATCGAT	1 cut(s)	583
BsiHKAI	GWGCWC	3 cut(s)	138, 1115, 1702
BsiHKCI	CYCGRG	2 cut(s)	314, 1244
BsiSI	CCGG	8 cut(s)	67, 280, 333, 428, 440, 1379, 1796, 2032
BsiWI	CGTACG	1 cut(s)	384
BslFI	GGGAC	3 cut(s)	353, 1372, 2326
BslI	CCNNNNNNNGG	6 cut(s)	279, 852, 939, 1557, 2234, 2357
BsmAI	GTCTC	4 cut(s)	206, 586, 1000, 1921
BsmFI	GGGAC	3 cut(s)	353, 1372, 2326
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	2 cut(s)	314, 1244
Bsp120I	GGGCCC	1 cut(s)	350
Bsp1286I	GDGCHC	6 cut(s)	138, 354, 1115, 1585, 1702, 2032
Bsp13I	TCCGGA	1 cut(s)	439
Bsp19I	CCATGG	1 cut(s)	1530
Bsp68I	TCGCGA	1 cut(s)	1505
BspCNI	CTCAG	8 cut(s)	629, 634, 1279, 1600, 1663, 1757, 2059, 2291
BspDI	ATCGAT	1 cut(s)	583
BspEI	TCCGGA	1 cut(s)	439
BspFNI	CGCG	5 cut(s)	51, 78, 240, 311, 1505
BspHI	TCATGA	2 cut(s)	823, 979
BspMAI	CTGCAG	2 cut(s)	190, 1840
BspMI	ACCTGC	3 cut(s)	577, 2065, 2075
BspPI	GGATC	6 cut(s)	191, 431, 1455, 1468, 1657, 2042
BspT107I	GGYRCC	1 cut(s)	601
BspTI	CTTAAG	2 cut(s)	850, 896
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	3 cut(s)	968, 1039, 1257
BsrFI	RCCGGY	2 cut(s)	279, 1795
BsrI	ACTGG	8 cut(s)	791, 819, 1277, 1520, 1935, 2192, 2320, 2370
BssAI	RCCGGY	2 cut(s)	279, 1795
BssECI	CCNNGG	6 cut(s)	216, 345, 459, 502, 1530, 2246
BssNAI	GTATAC	1 cut(s)	1075
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	2 cut(s)	345, 1530
Bst1107I	GTATAC	1 cut(s)	1075
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	3 cut(s)	224, 398, 2358
Bst4CI	ACNGT	9 cut(s)	230, 274, 389, 446, 577, 806, 1052, 1600, 2271
Bst6I	CTCTTC	3 cut(s)	695, 1068, 1919
BstACI	GRCGYC	1 cut(s)	105
BstAFI	CTTAAG	2 cut(s)	850, 896
BstAPI	GCANNNNNTGC	2 cut(s)	1580, 2315
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	8 cut(s)	354, 358, 417, 552, 708, 1358, 1828, 2207
BstDEI	CTNAG	9 cut(s)	616, 642, 743, 1287, 1608, 1671, 1744, 2046, 2278
BstDSI	CCRYGG	3 cut(s)	459, 502, 1530
BstENI	CCTNNNNNAGG	2 cut(s)	850, 2355
BstFNI	CGCG	5 cut(s)	51, 78, 240, 311, 1505
BstH2I	RGCGCY	2 cut(s)	404, 434
BstHHI	GCGC	6 cut(s)	51, 78, 270, 313, 403, 433
BstMAI	GTCTC	4 cut(s)	206, 586, 1000, 1921
BstNI	CCWGG	3 cut(s)	224, 398, 2358
BstNSI	RCATGY	3 cut(s)	655, 1387, 2209
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	5 cut(s)	222, 396, 1378, 2030, 2356
BstSFI	CTRYAG	2 cut(s)	186, 1836
BstSLI	GKGCMC	3 cut(s)	354, 1585, 2032
BstUI	CGCG	5 cut(s)	51, 78, 240, 311, 1505
BstV2I	GAAGAC	3 cut(s)	102, 1386, 2006
BstX2I	RGATCY	1 cut(s)	1460
BstXI	CCANNNNNNTGG	2 cut(s)	370, 685
BstYI	RGATCY	1 cut(s)	1460
BstZ17I	GTATAC	1 cut(s)	1075
Bsu15I	ATCGAT	1 cut(s)	583
BsuI	GTATCC	2 cut(s)	2168, 2244
BsuTUI	ATCGAT	1 cut(s)	583
BtgI	CCRYGG	3 cut(s)	459, 502, 1530
BtrI	CACGTC	1 cut(s)	2222
BtsIMutI	CAGTG	3 cut(s)	250, 582, 784
BtuMI	TCGCGA	1 cut(s)	1505
BveI	ACCTGC	3 cut(s)	577, 2065, 2075
Cac8I	GCNNGC	8 cut(s)	354, 358, 417, 552, 708, 1358, 1828, 2207
CaiI	CAGNNNCTG	3 cut(s)	403, 2090, 2315
CciI	TCATGA	2 cut(s)	823, 979
CfoI	GCGC	6 cut(s)	51, 78, 270, 313, 403, 433
Cfr10I	RCCGGY	2 cut(s)	279, 1795
ClaI	ATCGAT	1 cut(s)	583
CpoI	CGGWCCG	1 cut(s)	442
CseI	GACGC	3 cut(s)	113, 229, 1013
CsiI	ACCWGGT	1 cut(s)	2356
Csp6I	GTAC	5 cut(s)	385, 747, 1103, 2354, 2361
CspI	CGGWCCG	1 cut(s)	442
CviQI	GTAC	5 cut(s)	385, 747, 1103, 2354, 2361
DdeI	CTNAG	9 cut(s)	616, 642, 743, 1287, 1608, 1671, 1744, 2046, 2278
DrdI	GACNNNNNNGTC	2 cut(s)	233, 2320
DseDI	GACNNNNNNGTC	2 cut(s)	233, 2320
EaeI	YGGCCR	1 cut(s)	1527
Eam1104I	CTCTTC	3 cut(s)	695, 1068, 1919
EarI	CTCTTC	3 cut(s)	695, 1068, 1919
EciI	GGCGGA	2 cut(s)	397, 471
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	2 cut(s)	345, 1530
Eco147I	AGGCCT	1 cut(s)	2350
Eco24I	GRGCYC	2 cut(s)	138, 354
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	5 cut(s)	160, 220, 235, 442, 2093
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	6 cut(s)	771, 831, 975, 1709, 1958, 2133
Eco88I	CYCGRG	2 cut(s)	314, 1244
EcoICRI	GAGCTC	1 cut(s)	136
EcoNI	CCTNNNNNAGG	2 cut(s)	850, 2355
EcoO109I	RGGNCCY	3 cut(s)	160, 220, 350
EcoRI	GAATTC	1 cut(s)	1507
EcoRII	CCWGG	3 cut(s)	222, 396, 2356
EcoT14I	CCWWGG	2 cut(s)	345, 1530
EcoT22I	ATGCAT	2 cut(s)	657, 1322
EcoT38I	GRGCYC	2 cut(s)	138, 354
ErhI	CCWWGG	2 cut(s)	345, 1530
FalI	AAGNNNNNCTT	2 cut(s)	1815, 1847
FaqI	GGGAC	3 cut(s)	353, 1372, 2326
FauI	CCCGC	4 cut(s)	208, 329, 361, 2210
FbaI	TGATCA	2 cut(s)	781, 1867
FblI	GTMKAC	2 cut(s)	1074, 2324
FriOI	GRGCYC	2 cut(s)	138, 354
FspBI	CTAG	1 cut(s)	2364
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	6 cut(s)	50, 77, 269, 312, 402, 432
GsuI	CTGGAG	4 cut(s)	380, 1952, 2082, 2353
HaeII	RGCGCY	2 cut(s)	404, 434
HapII	CCGG	8 cut(s)	67, 280, 333, 428, 440, 1379, 1796, 2032
HgaI	GACGC	3 cut(s)	113, 229, 1013
HhaI	GCGC	6 cut(s)	51, 78, 270, 313, 403, 433
Hin1I	GRCGYC	1 cut(s)	105
Hin6I	GCGC	6 cut(s)	49, 76, 268, 311, 401, 431
HinP1I	GCGC	6 cut(s)	49, 76, 268, 311, 401, 431
HincII	GTYRAC	4 cut(s)	277, 2043, 2225, 2325
HindII	GTYRAC	4 cut(s)	277, 2043, 2225, 2325
HinfI	GANTC	7 cut(s)	20, 152, 760, 874, 1178, 1481, 1516
HpaII	CCGG	8 cut(s)	67, 280, 333, 428, 440, 1379, 1796, 2032
HphI	GGTGA	4 cut(s)	881, 998, 1208, 2136
Hpy166II	GTNNAC	8 cut(s)	277, 1075, 1988, 2024, 2043, 2156, 2225, 2325
Hpy8I	GTNNAC	8 cut(s)	277, 1075, 1988, 2024, 2043, 2156, 2225, 2325
HpyCH4III	ACNGT	9 cut(s)	230, 274, 389, 446, 577, 806, 1052, 1600, 2271
HpyCH4IV	ACGT	4 cut(s)	471, 2026, 2221, 2327
HpyF3I	CTNAG	9 cut(s)	616, 642, 743, 1287, 1608, 1671, 1744, 2046, 2278
HpySE526I	ACGT	4 cut(s)	471, 2026, 2221, 2327
Hsp92I	GRCGYC	1 cut(s)	105
HspAI	GCGC	6 cut(s)	49, 76, 268, 311, 401, 431
Kpn2I	TCCGGA	1 cut(s)	439
Ksp22I	TGATCA	2 cut(s)	781, 1867
LmnI	GCTCC	6 cut(s)	399, 461, 1933, 2063, 2290, 2372
LweI	GCATC	5 cut(s)	589, 1329, 1441, 1465, 1583
MabI	ACCWGGT	1 cut(s)	2356
MaeI	CTAG	1 cut(s)	2364
MaeII	ACGT	4 cut(s)	471, 2026, 2221, 2327
MaeIII	GTNAC	5 cut(s)	245, 475, 1083, 2120, 2142
MflI	RGATCY	1 cut(s)	1460
MhlI	GDGCHC	6 cut(s)	138, 354, 1115, 1585, 1702, 2032
MlsI	TGGCCA	1 cut(s)	1529
MluNI	TGGCCA	1 cut(s)	1529
MlyI	GAGTC	3 cut(s)	14, 146, 754
MmeI	TCCRAC	2 cut(s)	1196, 1386
Mox20I	TGGCCA	1 cut(s)	1529
Mph1103I	ATGCAT	2 cut(s)	657, 1322
MroI	TCCGGA	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	1529
MseI	TTAA	8 cut(s)	851, 897, 914, 1809, 1943, 2258, 2301, 2330
MslI	CAYNNNNRTG	4 cut(s)	973, 984, 1172, 1529
Msp20I	TGGCCA	1 cut(s)	1529
MspA1I	CMGCKG	4 cut(s)	185, 890, 953, 1841
MspCI	CTTAAG	2 cut(s)	850, 896
MspI	CCGG	8 cut(s)	67, 280, 333, 428, 440, 1379, 1796, 2032
MspR9I	CCNGG	5 cut(s)	224, 398, 1380, 2032, 2358
MvaI	CCWGG	3 cut(s)	224, 398, 2358
MvnI	CGCG	5 cut(s)	51, 78, 240, 311, 1505
NciI	CCSGG	2 cut(s)	1380, 2032
NcoI	CCATGG	1 cut(s)	1530
NmeAIII	GCCGAG	1 cut(s)	2271
NmuCI	GTSAC	4 cut(s)	245, 475, 1083, 2142
NruI	TCGCGA	1 cut(s)	1505
NsbI	TGCGCA	1 cut(s)	269
NsiI	ATGCAT	2 cut(s)	657, 1322
NspI	RCATGY	3 cut(s)	655, 1387, 2209
PaeI	GCATGC	1 cut(s)	2209
PaeR7I	CTCGAG	2 cut(s)	314, 1244
PagI	TCATGA	2 cut(s)	823, 979
PaqCI	CACCTGC	1 cut(s)	2075
PceI	AGGCCT	1 cut(s)	2350
PcsI	WCGNNNNNNNCGW	7 cut(s)	90, 96, 99, 129, 144, 312, 769
PfeI	GAWTC	4 cut(s)	874, 1178, 1481, 1516
Pfl23II	CGTACG	1 cut(s)	384
PfoI	TCCNGGA	1 cut(s)	222
PleI	GAGTC	3 cut(s)	14, 146, 754
PpsI	GAGTC	3 cut(s)	14, 146, 754
Ppu21I	YACGTR	1 cut(s)	472
PpuMI	RGGWCCY	2 cut(s)	160, 220
PshAI	GACNNNNGTC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	1910
Psp124BI	GAGCTC	1 cut(s)	138
Psp5II	RGGWCCY	2 cut(s)	160, 220
Psp6I	CCWGG	3 cut(s)	222, 396, 2356
PspGI	CCWGG	3 cut(s)	222, 396, 2356
PspLI	CGTACG	1 cut(s)	384
PspOMI	GGGCCC	1 cut(s)	350
PspPPI	RGGWCCY	2 cut(s)	160, 220
PspXI	VCTCGAGB	2 cut(s)	314, 1244
PstI	CTGCAG	2 cut(s)	190, 1840
PstNI	CAGNNNCTG	3 cut(s)	403, 2090, 2315
PsuI	RGATCY	1 cut(s)	1460
PvuII	CAGCTG	3 cut(s)	890, 953, 1841
RruI	TCGCGA	1 cut(s)	1505
RsaI	GTAC	5 cut(s)	386, 748, 1104, 2355, 2362
RsaNI	GTAC	5 cut(s)	385, 747, 1103, 2354, 2361
RseI	CAYNNNNRTG	4 cut(s)	973, 984, 1172, 1529
Rsr2I	CGGWCCG	1 cut(s)	442
RsrII	CGGWCCG	1 cut(s)	442
SacI	GAGCTC	1 cut(s)	138
SalI	GTCGAC	1 cut(s)	2323
SaqAI	TTAA	8 cut(s)	851, 897, 914, 1809, 1943, 2258, 2301, 2330
ScaI	AGTACT	1 cut(s)	748
SchI	GAGTC	3 cut(s)	14, 146, 754
ScrFI	CCNGG	5 cut(s)	224, 398, 1380, 2032, 2358
SduI	GDGCHC	6 cut(s)	138, 354, 1115, 1585, 1702, 2032
SexAI	ACCWGGT	1 cut(s)	2356
SfaNI	GCATC	5 cut(s)	589, 1329, 1441, 1465, 1583
SfcI	CTRYAG	2 cut(s)	186, 1836
Sfr274I	CTCGAG	2 cut(s)	314, 1244
SinI	GGWCC	5 cut(s)	160, 220, 235, 442, 2093
SlaI	CTCGAG	2 cut(s)	314, 1244
SmiMI	CAYNNNNRTG	4 cut(s)	973, 984, 1172, 1529
SmlI	CTYRAG	6 cut(s)	314, 850, 896, 944, 1224, 1244
SmoI	CTYRAG	6 cut(s)	314, 850, 896, 944, 1224, 1244
SphI	GCATGC	1 cut(s)	2209
SseBI	AGGCCT	1 cut(s)	2350
SspI	AATATT	2 cut(s)	1369, 1906
SspMI	CTAG	1 cut(s)	2364
SstI	GAGCTC	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	2350
StyD4I	CCNGG	5 cut(s)	222, 396, 1378, 2030, 2356
StyI	CCWWGG	2 cut(s)	345, 1530
TaaI	ACNGT	9 cut(s)	230, 274, 389, 446, 577, 806, 1052, 1600, 2271
TaiI	ACGT	4 cut(s)	474, 2029, 2224, 2330
TaqI	TCGA	8 cut(s)	138, 315, 435, 488, 583, 763, 1245, 2324
TaqII	GACCGA	1 cut(s)	230
TatI	WGTACW	2 cut(s)	746, 1102
TauI	GCSGC	4 cut(s)	116, 119, 467, 607
TfiI	GAWTC	4 cut(s)	874, 1178, 1481, 1516
Tru1I	TTAA	8 cut(s)	851, 897, 914, 1809, 1943, 2258, 2301, 2330
Tru9I	TTAA	8 cut(s)	851, 897, 914, 1809, 1943, 2258, 2301, 2330
TscAI	CASTG	3 cut(s)	250, 582, 791
TseFI	GTSAC	4 cut(s)	245, 475, 1083, 2142
Tsp45I	GTSAC	4 cut(s)	245, 475, 1083, 2142
TspDTI	ATGAA	9 cut(s)	524, 681, 1156, 1293, 1316, 1421, 1527, 1991, 2203
TspGWI	ACGGA	3 cut(s)	283, 448, 761
TspRI	CASTG	3 cut(s)	250, 582, 791
Vha464I	CTTAAG	2 cut(s)	850, 896
VpaK11BI	GGWCC	5 cut(s)	160, 220, 235, 442, 2093
XagI	CCTNNNNNAGG	2 cut(s)	850, 2355
XapI	RAATTY	6 cut(s)	60, 920, 1507, 1708, 1717, 1884
XceI	RCATGY	3 cut(s)	655, 1387, 2209
XhoI	CTCGAG	2 cut(s)	314, 1244
XmiI	GTMKAC	2 cut(s)	1074, 2324
XspI	CTAG	1 cut(s)	2364
ZrmI	AGTACT	1 cut(s)	748
Zsp2I	ATGCAT	2 cut(s)	657, 1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.