Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Reverse (-)

12024495 .. 12031392

Gene Structure 6898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011705

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGCCAGCTTCCCCTTCCTTCCCATCTTCAGACGGGCGCGGCAAATGGAGGAAGCGAAAGCGGGACCCCCAAATTCGCCGCCGCCCGCGCGACGACGACGACGACGATGAGGACGACGACGCCGCCGCGGCCGCTGCCGACGACAACAACAACGACCTCGACCACGACGACTCCGACCCTAGCGCCGCCGCAGCACCCGATCCCGCCCCGCACGAGACCGAGGTCCTCGACGGTGGGCTCCGCCACAACGATTTCCCTCCCGTCGTTTTGCGCACCGTGAATAGGCCCCACTCCTCGGTTCTCGCCCTTGTGGCGGTCGAGCGGGCCAACCACATTAACTCCGCCGGCGACGGGAAGGGCCCGGTGAGTCCTCTGGTGTTGGAGAATGTGTCGCACGGCCAGCTTCAGGCCTTGTCCGCCGTCCCGGCCGATTGTCCGTCGTTGGATCAGGACCGTCCAGATGGCGCCAGTTCGGCTTATGTCGTTACGCCGCCGGCGATTATGGAAGGCCGCGGCGTTGTGAAGCGGTATGGGAGTAGAGTTCATGTGGTTCCAATGCACGCAGATTGGTTTTCACCGGCTACGGTGCATCGACTGGAGAGACAGGTGGTGCCACATTTTTTCTCAGGAAAGTCACCAGAGTTTACTCCTGAGATGTACATGCAAAGTAGGAATGAAATTGTCGCCAAGTACATGGAAAACCCAGAGAAGAGGCTTACAGTTTCTGATTGCACAAAATTAACAAGCCATCTAAATACTGAAGATTTGACTCGAATAGTTCGGTTTCTTGATCACTGGGGAATTATCAATTACTCTGCTGCCGCACCAAGTCCTGAGCCTTGGAATGGTAATTCCTACTTAAGGGAGGAGCAAAATGGTGAGATTCATGTTCCATCAGCTGCGTTGAAGTCGATTGATAGTCTGATCAAATTTGACAAGCCCAGATGTAGGCTTAAGGCAGCTGATGTTTATAAGTCATTGTCCTGTCATGATGACGATGATGACACCTCTGATTTGGACAACAGAATTCGAAAACGTCTATGTGAAAATCATTGCAACTATTGTTCTTGTTCTCTTCCCAGTGTATGCTATCAGTCACAGAAGGAGGTTGATGTACTGCTCTGCTCTGACTGCTTCCATGAGGGAAGATATGTTGTTGGCCATTCAAGCATAGATTTCATACGAGTGGATTCAACAAAAGATTATGGTGATCTAGATGGGGAAAATTGGACTGATCAAGAAACCCTACTGCTGCTTGAGGCCATGGAAATCTATAATGAGAACTGGAATGAAATTGCAGAGCATGTTGGTACAAAGTCAAAAGCGCAATGCATACTTCATTTTCTACGTTTGCCTGTGGAGGATGGCCTGCTGGAAAATATTGAAGTTCCAAAGATGCCTCTGTCATCCAACACGTCAAATAGAGATGATCATGGCGGATTTCATTCAACTTCAAATGGGAATTCAGCAGGATCCTGCCTACAAGATGGTGATTCTGAAAGCAGGTTCCCTTTTGCAAATTCTGGGAATCCAGTCATGTCCCTGGTTGCCTTTCTGGCCTCTTCTGTTGGGCCAAGAGTCGCTGCATCTTGTGCCCATGCAGCCTTGGCAGTGTTGTCTGAGGACAATGGCTTACCTGCTTCTGGAAGTAATTTTCAGGAAGGATCAGGAGGACATAGGATGAACTTGGAGAGCATGCATGGTCAAGGTGGCGCTCATAAAAATATTGCAAATTCAGTTCAGCAGAAGGATGAGAAATCAGCAGGCCAAGGTTCTTGGGGTAAAAATGAGGCAGGGCCGACTCCAGTACCTGCAGAAAAAGTTAAAGCTGCTGCCAAAGCTGGCCTTGCTGCTGCTGCAATAAAAGCAAAATTGTTTGCTGATCATGAAGAACGGGAAATTCAGAGGTTATCTGCTAATATTGTAAATCATCAGTTGAAGAGATTGGAGCTGAAGTTAAAGCAGTTTGCAGAAGTGGAAACTTATCTAATGAAAGAATGTGAACAAGTGGAGAAGACAAGGCAGAGGATGGTTGCCGAACGTACCCGTCTTATATCAACTCGGTTTGGAGCTGCTGGAGTTGCTCCACCCAATAACTTAGCAGGTGTTGGTCCTTCCATGGCCAATAATAACACTGGTAACAATAGGCAACAAATTATGCCATCTTCGGCTTCCCAGCCAAGTGTATCCGGATACAGCAACAACCAACCAGTCCATTCTCACATGCCTTTCATGCCACAACAATCAATGCTAGGATTGGGACCGAGGATGCCCTTGGCGTCCATACAAGCCTCCTCATCAGCTCCAAATGCCATGTTTAATTCCCCAGGGACTGGTCGGCCGACTCTAAGTCATCCGATGCTGAGGCCTGTACCGGGTACTAGCTCTGGTTTAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

800

Amino Acids

86.91

Weight (kDa)

5.76

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	192 - 271	1.9e-19	SWIRM domain
Myb_DNA-binding	PF00249	408 - 450	4e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	410 - 452	3.7e-08	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	614 - 690	9.4e-25	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	972
AarI	CACCTGC	1 cut(s)	2093
Acc16I	TGCGCA	1 cut(s)	272
Acc36I	ACCTGC	4 cut(s)	1494, 1645, 1819, 2093
AccB1I	GGYRCC	2 cut(s)	464, 610
AccB7I	CCANNNNNTGG	1 cut(s)	2333
AccBSI	CCGCTC	1 cut(s)	322
AccII	CGCG	5 cut(s)	39, 88, 90, 128, 513
AccIII	TCCGGA	1 cut(s)	2189
AclWI	GGATC	5 cut(s)	194, 453, 1467, 1480, 1672
AcoI	YGGCCR	6 cut(s)	129, 397, 426, 1159, 2121, 2339
AcsI	RAATTY	7 cut(s)	72, 929, 1026, 1462, 1519, 1732, 1899
AcuI	CTGAAG	4 cut(s)	12, 389, 780, 1973
AcyI	GRCGYC	3 cut(s)	120, 465, 2279
AfaI	GTAC	8 cut(s)	659, 692, 1116, 1312, 1809, 2044, 2373, 2380
AflII	CTTAAG	2 cut(s)	859, 953
AflIII	ACRYGT	1 cut(s)	1413
AgsI	TTSAA	7 cut(s)	907, 1167, 1194, 1385, 1449, 1455, 1939
AhdI	GACNNNNNGTC	1 cut(s)	2349
AjiI	CACGTC	1 cut(s)	1416
AjnI	CCWGG	2 cut(s)	1542, 2326
Alw26I	GTCTC	2 cut(s)	209, 595
AlwI	GGATC	5 cut(s)	194, 453, 1467, 1480, 1672
AlwNI	CAGNNNCTG	3 cut(s)	725, 1811, 2333
Aor13HI	TCCGGA	1 cut(s)	2189
ApaI	GGGCCC	1 cut(s)	362
ApoI	RAATTY	7 cut(s)	72, 929, 1026, 1462, 1519, 1732, 1899
AspLEI	GCGC	7 cut(s)	39, 90, 185, 273, 467, 1327, 1715
AsuC2I	CCSGG	3 cut(s)	362, 425, 2376
AsuHPI	GGTGA	6 cut(s)	376, 567, 627, 890, 1220, 1502
AsuII	TTCGAA	1 cut(s)	1030
AvaII	GGWCC	5 cut(s)	64, 223, 451, 2111, 2261
BaeGI	GKGCMC	2 cut(s)	362, 1597
BaeI	ACNNNNGTAYC	2 cut(s)	1791, 1824
BalI	TGGCCA	2 cut(s)	1161, 2123
BamHI	GGATCC	1 cut(s)	1472
BanI	GGYRCC	2 cut(s)	464, 610
BanII	GRGCYC	2 cut(s)	240, 362
BauI	CACGAG	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	2021
BbvCI	CCTCAGC	1 cut(s)	2363
BccI	CCATC	9 cut(s)	31, 455, 756, 901, 1211, 1358, 1481, 2023, 2170
BceAI	ACGGC	2 cut(s)	404, 412
BciT130I	CCWGG	2 cut(s)	1544, 2328
BciVI	GTATCC	2 cut(s)	2186, 2197
BclI	TGATCA	5 cut(s)	790, 924, 1234, 1429, 1882
BcnI	CCSGG	3 cut(s)	362, 425, 2376
BcoDI	GTCTC	2 cut(s)	209, 595
BfaI	CTAG	4 cut(s)	180, 1214, 2252, 2382
BfmI	CTRYAG	1 cut(s)	1812
BfoI	RGCGCY	3 cut(s)	186, 468, 1716
BfrI	CTTAAG	2 cut(s)	859, 953
BfuAI	ACCTGC	4 cut(s)	1494, 1645, 1819, 2093
BfuI	GTATCC	2 cut(s)	2186, 2197
BglI	GCCNNNNNGGC	5 cut(s)	128, 311, 425, 473, 1556
Bme1390I	CCNGG	5 cut(s)	362, 425, 1544, 2328, 2376
Bme18I	GGWCC	5 cut(s)	64, 223, 451, 2111, 2261
BmeRI	GACNNNNNGTC	1 cut(s)	2349
BmgBI	CACGTC	1 cut(s)	1416
BmrFI	CCNGG	5 cut(s)	362, 425, 1544, 2328, 2376
BmrI	ACTGGG	2 cut(s)	805, 1074
BmsI	GCATC	5 cut(s)	598, 1386, 1595, 2259, 2349
BmuI	ACTGGG	2 cut(s)	805, 1074
BoxI	GACNNNNGTC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	2021
BpmI	CTGGAG	3 cut(s)	617, 1788, 2097
Bpu10I	CCTNAGC	2 cut(s)	834, 2363
Bpu14I	TTCGAA	1 cut(s)	1030
BpuEI	CTTGAG	1 cut(s)	1277
BpuMI	CCSGG	3 cut(s)	362, 425, 2376
BsaHI	GRCGYC	3 cut(s)	120, 465, 2279
BsaI	GGTCTC	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	2189
BsaXI	ACNNNNNCTCC	8 cut(s)	155, 185, 323, 353, 374, 404, 1940, 1970
Bse118I	RCCGGY	3 cut(s)	344, 493, 577
Bse3DI	GCAATG	2 cut(s)	1051, 1334
BseAI	TCCGGA	1 cut(s)	2189
BseBI	CCWGG	2 cut(s)	1544, 2328
BseGI	GGATG	7 cut(s)	1369, 1406, 1686, 1756, 2034, 2274, 2353
BseMI	GCAATG	2 cut(s)	1051, 1334
BseMII	CTCAG	5 cut(s)	639, 642, 825, 1611, 2354
BseRI	GAGGAG	3 cut(s)	283, 881, 2284
BseSI	GKGCMC	2 cut(s)	362, 1597
BseX3I	CGGCCG	3 cut(s)	129, 426, 2339
BseYI	CCCAGC	1 cut(s)	2175
Bsh1236I	CGCG	5 cut(s)	39, 88, 90, 128, 513
Bsh1285I	CGRYCG	4 cut(s)	132, 318, 429, 2342
BshNI	GGYRCC	2 cut(s)	464, 610
BsiEI	CGRYCG	4 cut(s)	132, 318, 429, 2342
BsiSI	CCGG	7 cut(s)	345, 362, 425, 494, 578, 2190, 2375
BslFI	GGGAC	5 cut(s)	77, 407, 1525, 2274, 2344
BsmAI	GTCTC	2 cut(s)	209, 595
BsmFI	GGGAC	5 cut(s)	77, 407, 1525, 2274, 2344
Bso31I	GGTCTC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	1030
Bsp120I	GGGCCC	1 cut(s)	358
Bsp1286I	GDGCHC	3 cut(s)	240, 362, 1597
Bsp13I	TCCGGA	1 cut(s)	2189
Bsp1407I	TGTACA	1 cut(s)	657
Bsp19I	CCATGG	2 cut(s)	1263, 2118
BspCNI	CTCAG	5 cut(s)	638, 643, 826, 1612, 2355
BspEI	TCCGGA	1 cut(s)	2189
BspFNI	CGCG	5 cut(s)	39, 88, 90, 128, 513
BspHI	TCATGA	2 cut(s)	988, 1885
BspMAI	CTGCAG	1 cut(s)	1816
BspMI	ACCTGC	4 cut(s)	1494, 1645, 1819, 2093
BspPI	GGATC	5 cut(s)	194, 453, 1467, 1480, 1672
BspT104I	TTCGAA	1 cut(s)	1030
BspT107I	GGYRCC	2 cut(s)	464, 610
BspTI	CTTAAG	2 cut(s)	859, 953
BspTNI	GGTCTC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	322
BsrDI	GCAATG	2 cut(s)	1051, 1334
BsrFI	RCCGGY	3 cut(s)	344, 493, 577
BsrGI	TGTACA	1 cut(s)	657
BssAI	RCCGGY	3 cut(s)	344, 493, 577
BssNI	GRCGYC	3 cut(s)	120, 465, 2279
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	6 cut(s)	839, 1263, 1605, 1768, 2118, 2274
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	1544, 2328
Bst4CI	ACNGT	5 cut(s)	233, 277, 455, 586, 721
Bst6I	CTCTTC	4 cut(s)	704, 1080, 1567, 1934
BstACI	GRCGYC	3 cut(s)	120, 465, 2279
BstAFI	CTTAAG	2 cut(s)	859, 953
BstAPI	GCANNNNNTGC	1 cut(s)	1592
BstAUI	TGTACA	1 cut(s)	657
BstBI	TTCGAA	1 cut(s)	1030
BstDEI	CTNAG	7 cut(s)	625, 651, 834, 1620, 2098, 2348, 2363
BstDSI	CCRYGG	4 cut(s)	126, 511, 1263, 2118
BstENI	CCTNNNNNAGG	1 cut(s)	859
BstF5I	GGATG	7 cut(s)	1369, 1406, 1686, 1756, 2034, 2274, 2353
BstFNI	CGCG	5 cut(s)	39, 88, 90, 128, 513
BstH2I	RGCGCY	3 cut(s)	186, 468, 1716
BstHHI	GCGC	7 cut(s)	39, 90, 185, 273, 467, 1327, 1715
BstMAI	GTCTC	2 cut(s)	209, 595
BstMCI	CGRYCG	4 cut(s)	132, 318, 429, 2342
BstNI	CCWGG	2 cut(s)	1544, 2328
BstNSI	RCATGY	4 cut(s)	664, 1307, 1699, 2227
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	5 cut(s)	360, 423, 1542, 2326, 2374
BstSFI	CTRYAG	1 cut(s)	1812
BstSLI	GKGCMC	2 cut(s)	362, 1597
BstUI	CGCG	5 cut(s)	39, 88, 90, 128, 513
BstV2I	GAAGAC	1 cut(s)	2021
BstX2I	RGATCY	1 cut(s)	1472
BstXI	CCANNNNNNTGG	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	1472
BstZI	CGGCCG	3 cut(s)	129, 426, 2339
BsuI	GTATCC	2 cut(s)	2186, 2197
BtgI	CCRYGG	4 cut(s)	126, 511, 1263, 2118
BtrI	CACGTC	1 cut(s)	1416
BtsCI	GGATG	7 cut(s)	1369, 1406, 1686, 1756, 2034, 2274, 2353
BtsI	GCAGTG	1 cut(s)	1617
BtsIMutI	CAGTG	4 cut(s)	793, 1087, 1617, 2133
BveI	ACCTGC	4 cut(s)	1494, 1645, 1819, 2093
CaiI	CAGNNNCTG	3 cut(s)	725, 1811, 2333
CciI	TCATGA	2 cut(s)	988, 1885
CciNI	GCGGCCGC	1 cut(s)	129
CfoI	GCGC	7 cut(s)	39, 90, 185, 273, 467, 1327, 1715
Cfr10I	RCCGGY	3 cut(s)	344, 493, 577
Cfr42I	CCGCGG	2 cut(s)	129, 514
CseI	GACGC	2 cut(s)	128, 2268
Csp6I	GTAC	8 cut(s)	658, 691, 1115, 1311, 1808, 2043, 2372, 2379
CviQI	GTAC	8 cut(s)	658, 691, 1115, 1311, 1808, 2043, 2372, 2379
DdeI	CTNAG	7 cut(s)	625, 651, 834, 1620, 2098, 2348, 2363
DinI	GGCGCC	1 cut(s)	466
DriI	GACNNNNNGTC	1 cut(s)	2349
EaeI	YGGCCR	6 cut(s)	129, 397, 426, 1159, 2121, 2339
EagI	CGGCCG	3 cut(s)	129, 426, 2339
Eam1104I	CTCTTC	4 cut(s)	704, 1080, 1567, 1934
Eam1105I	GACNNNNNGTC	1 cut(s)	2349
EarI	CTCTTC	4 cut(s)	704, 1080, 1567, 1934
EciI	GGCGGA	4 cut(s)	230, 331, 406, 1452
EclXI	CGGCCG	3 cut(s)	129, 426, 2339
Eco130I	CCWWGG	6 cut(s)	839, 1263, 1605, 1768, 2118, 2274
Eco147I	AGGCCT	2 cut(s)	410, 2368
Eco24I	GRGCYC	2 cut(s)	240, 362
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	5 cut(s)	64, 223, 451, 2111, 2261
Eco52I	CGGCCG	3 cut(s)	129, 426, 2339
Eco57I	CTGAAG	4 cut(s)	12, 389, 780, 1973
EcoNI	CCTNNNNNAGG	1 cut(s)	859
EcoO109I	RGGNCCY	4 cut(s)	64, 223, 285, 358
EcoRI	GAATTC	2 cut(s)	1026, 1462
EcoRII	CCWGG	2 cut(s)	1542, 2326
EcoT14I	CCWWGG	6 cut(s)	839, 1263, 1605, 1768, 2118, 2274
EcoT22I	ATGCAT	2 cut(s)	1334, 1701
EcoT38I	GRGCYC	2 cut(s)	240, 362
EgeI	GGCGCC	1 cut(s)	466
EheI	GGCGCC	1 cut(s)	466
ErhI	CCWWGG	6 cut(s)	839, 1263, 1605, 1768, 2118, 2274
FalI	AAGNNNNNCTT	2 cut(s)	1830, 1862
FaqI	GGGAC	5 cut(s)	77, 407, 1525, 2274, 2344
FauI	CCCGC	5 cut(s)	54, 93, 211, 216, 315
FbaI	TGATCA	5 cut(s)	790, 924, 1234, 1429, 1882
FokI	GGATG	7 cut(s)	1376, 1393, 1693, 1763, 2041, 2281, 2340
FriOI	GRGCYC	2 cut(s)	240, 362
FspBI	CTAG	4 cut(s)	180, 1214, 2252, 2382
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	7 cut(s)	38, 89, 184, 272, 466, 1326, 1714
GsaI	CCCAGC	1 cut(s)	2179
GsuI	CTGGAG	3 cut(s)	617, 1788, 2097
HaeII	RGCGCY	3 cut(s)	186, 468, 1716
HapII	CCGG	7 cut(s)	345, 362, 425, 494, 578, 2190, 2375
HgaI	GACGC	2 cut(s)	128, 2268
HhaI	GCGC	7 cut(s)	39, 90, 185, 273, 467, 1327, 1715
Hin1I	GRCGYC	3 cut(s)	120, 465, 2279
Hin6I	GCGC	7 cut(s)	37, 88, 183, 271, 465, 1325, 1713
HinP1I	GCGC	7 cut(s)	37, 88, 183, 271, 465, 1325, 1713
HpaII	CCGG	7 cut(s)	345, 362, 425, 494, 578, 2190, 2375
HphI	GGTGA	6 cut(s)	376, 567, 627, 890, 1220, 1502
Hpy166II	GTNNAC	2 cut(s)	645, 2003
Hpy8I	GTNNAC	2 cut(s)	645, 2003
HpyAV	CCTTC	8 cut(s)	24, 28, 349, 500, 1096, 1655, 1741, 2124
HpyCH4III	ACNGT	5 cut(s)	233, 277, 455, 586, 721
HpyCH4IV	ACGT	4 cut(s)	1036, 1348, 1415, 2041
HpyF3I	CTNAG	7 cut(s)	625, 651, 834, 1620, 2098, 2348, 2363
HpySE526I	ACGT	4 cut(s)	1036, 1348, 1415, 2041
Hsp92I	GRCGYC	3 cut(s)	120, 465, 2279
HspAI	GCGC	7 cut(s)	37, 88, 183, 271, 465, 1325, 1713
KasI	GGCGCC	1 cut(s)	464
KflI	GGGWCCC	1 cut(s)	64
Kpn2I	TCCGGA	1 cut(s)	2189
KroI	GCCGGC	2 cut(s)	344, 493
KroNI	GCCGGC	2 cut(s)	346, 495
Ksp22I	TGATCA	5 cut(s)	790, 924, 1234, 1429, 1882
KspI	CCGCGG	2 cut(s)	129, 514
LmnI	GCTCC	6 cut(s)	243, 868, 1948, 2069, 2089, 2308
LweI	GCATC	5 cut(s)	598, 1386, 1595, 2259, 2349
MaeI	CTAG	4 cut(s)	180, 1214, 2252, 2382
MaeII	ACGT	4 cut(s)	1036, 1348, 1415, 2041
MaeIII	GTNAC	4 cut(s)	484, 633, 1095, 2138
MbiI	CCGCTC	1 cut(s)	322
MflI	RGATCY	1 cut(s)	1472
MhlI	GDGCHC	3 cut(s)	240, 362, 1597
MlsI	TGGCCA	2 cut(s)	1161, 2123
MluNI	TGGCCA	2 cut(s)	1161, 2123
Mly113I	GGCGCC	1 cut(s)	465
MlyI	GAGTC	6 cut(s)	164, 376, 763, 1587, 1795, 2338
MmeI	TCCRAC	4 cut(s)	198, 360, 423, 1434
Mox20I	TGGCCA	2 cut(s)	1161, 2123
Mph1103I	ATGCAT	2 cut(s)	1334, 1701
MreI	CGCCGGCG	2 cut(s)	344, 493
MroI	TCCGGA	1 cut(s)	2189
MroNI	GCCGGC	2 cut(s)	344, 493
MscI	TGGCCA	2 cut(s)	1161, 2123
MseI	TTAA	7 cut(s)	336, 740, 860, 954, 1824, 1958, 2319
MslI	CAYNNNNRTG	1 cut(s)	1184
Msp20I	TGGCCA	2 cut(s)	1161, 2123
MspA1I	CMGCKG	5 cut(s)	128, 134, 513, 899, 962
MspCI	CTTAAG	2 cut(s)	859, 953
MspI	CCGG	7 cut(s)	345, 362, 425, 494, 578, 2190, 2375
MspR9I	CCNGG	5 cut(s)	362, 425, 1544, 2328, 2376
MvaI	CCWGG	2 cut(s)	1544, 2328
MvnI	CGCG	5 cut(s)	39, 88, 90, 128, 513
NaeI	GCCGGC	2 cut(s)	346, 495
NarI	GGCGCC	1 cut(s)	465
NciI	CCSGG	3 cut(s)	362, 425, 2376
NcoI	CCATGG	2 cut(s)	1263, 2118
NgoMIV	GCCGGC	2 cut(s)	344, 493
NmuCI	GTSAC	2 cut(s)	633, 1095
NotI	GCGGCCGC	1 cut(s)	129
NsbI	TGCGCA	1 cut(s)	272
NsiI	ATGCAT	2 cut(s)	1334, 1701
NspI	RCATGY	4 cut(s)	664, 1307, 1699, 2227
NspV	TTCGAA	1 cut(s)	1030
PaeI	GCATGC	1 cut(s)	1699
PagI	TCATGA	2 cut(s)	988, 1885
PaqCI	CACCTGC	1 cut(s)	2093
PasI	CCCWGGG	1 cut(s)	2327
PceI	AGGCCT	2 cut(s)	410, 2368
PcsI	WCGNNNNNNNCGW	6 cut(s)	99, 102, 111, 165, 171, 494
PdiI	GCCGGC	2 cut(s)	346, 495
PfeI	GAWTC	4 cut(s)	883, 1190, 1493, 1528
PflMI	CCANNNNNTGG	1 cut(s)	2333
PleI	GAGTC	6 cut(s)	164, 375, 763, 1586, 1795, 2338
PluTI	GGCGCC	1 cut(s)	468
PpsI	GAGTC	6 cut(s)	164, 375, 763, 1586, 1795, 2338
PpuMI	RGGWCCY	2 cut(s)	64, 223
PshAI	GACNNNNGTC	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	972
Psp5II	RGGWCCY	2 cut(s)	64, 223
Psp6I	CCWGG	2 cut(s)	1542, 2326
PspFI	CCCAGC	1 cut(s)	2175
PspGI	CCWGG	2 cut(s)	1542, 2326
PspOMI	GGGCCC	1 cut(s)	358
PspPPI	RGGWCCY	2 cut(s)	64, 223
PstI	CTGCAG	1 cut(s)	1816
PstNI	CAGNNNCTG	3 cut(s)	725, 1811, 2333
PsuI	RGATCY	1 cut(s)	1472
PvuII	CAGCTG	2 cut(s)	899, 962
RsaI	GTAC	8 cut(s)	659, 692, 1116, 1312, 1809, 2044, 2373, 2380
RsaNI	GTAC	8 cut(s)	658, 691, 1115, 1311, 1808, 2043, 2372, 2379
RseI	CAYNNNNRTG	1 cut(s)	1184
SacII	CCGCGG	2 cut(s)	129, 514
SaqAI	TTAA	7 cut(s)	336, 740, 860, 954, 1824, 1958, 2319
SchI	GAGTC	6 cut(s)	164, 376, 763, 1587, 1795, 2338
ScrFI	CCNGG	5 cut(s)	362, 425, 1544, 2328, 2376
SduI	GDGCHC	3 cut(s)	240, 362, 1597
SfaNI	GCATC	5 cut(s)	598, 1386, 1595, 2259, 2349
SfcI	CTRYAG	1 cut(s)	1812
SfoI	GGCGCC	1 cut(s)	466
Sfr303I	CCGCGG	2 cut(s)	129, 514
SfuI	TTCGAA	1 cut(s)	1030
SgrAI	CRCCGGYG	2 cut(s)	344, 493
SgrBI	CCGCGG	2 cut(s)	129, 514
SinI	GGWCC	5 cut(s)	64, 223, 451, 2111, 2261
SmiMI	CAYNNNNRTG	1 cut(s)	1184
SmlI	CTYRAG	3 cut(s)	859, 953, 1256
SmoI	CTYRAG	3 cut(s)	859, 953, 1256
SphI	GCATGC	1 cut(s)	1699
SseBI	AGGCCT	2 cut(s)	410, 2368
SspDI	GGCGCC	1 cut(s)	464
SspI	AATATT	3 cut(s)	1381, 1726, 1921
SspMI	CTAG	4 cut(s)	180, 1214, 2252, 2382
StuI	AGGCCT	2 cut(s)	410, 2368
StyD4I	CCNGG	5 cut(s)	360, 423, 1542, 2326, 2374
StyI	CCWWGG	6 cut(s)	839, 1263, 1605, 1768, 2118, 2274
TaaI	ACNGT	5 cut(s)	233, 277, 455, 586, 721
TaiI	ACGT	4 cut(s)	1039, 1351, 1418, 2044
TaqI	TCGA	7 cut(s)	159, 228, 318, 592, 772, 911, 1030
TaqII	GACCGA	2 cut(s)	233, 2278
TatI	WGTACW	3 cut(s)	657, 690, 1114
TfiI	GAWTC	4 cut(s)	883, 1190, 1493, 1528
Tru1I	TTAA	7 cut(s)	336, 740, 860, 954, 1824, 1958, 2319
Tru9I	TTAA	7 cut(s)	336, 740, 860, 954, 1824, 1958, 2319
TscAI	CASTG	4 cut(s)	800, 1087, 1617, 2140
TseFI	GTSAC	2 cut(s)	633, 1095
Tsp45I	GTSAC	2 cut(s)	633, 1095
TspGWI	ACGGA	1 cut(s)	426
TspRI	CASTG	4 cut(s)	800, 1087, 1617, 2140
Van91I	CCANNNNNTGG	1 cut(s)	2333
Vha464I	CTTAAG	2 cut(s)	859, 953
VpaK11BI	GGWCC	5 cut(s)	64, 223, 451, 2111, 2261
XagI	CCTNNNNNAGG	1 cut(s)	859
XapI	RAATTY	7 cut(s)	72, 929, 1026, 1462, 1519, 1732, 1899
XbaI	TCTAGA	1 cut(s)	1213
XceI	RCATGY	4 cut(s)	664, 1307, 1699, 2227
XspI	CTAG	4 cut(s)	180, 1214, 2252, 2382
Zsp2I	ATGCAT	2 cut(s)	1334, 1701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.