Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005880

Physical Location & Seq

Genomic Coordinates Forward (+)

56851923 .. 56859362

Gene Structure 7440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG373700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGCCAGCTTCCCCTTCCTTCCCATCTTCAGACGGGCGCGGCAAATGGAGGAAGCGAAAGCGGGACCCCCAAATTCGCCGCCGCCCGCGCGACGACGACGACGACGAGGACGACGACGCCGCCGCGGCCGCTGCCGACGACAACAACGACCTCGACCACGACGACTCCGACCCTAGCGCCGCCGCAGCACCCGATCCCGCTCCGCACGAGACCGAGGTCCTCGACGGTGGGCTCCGCCACAACGATTTCCCTCCCGTCGTTTTACGCACCGTGAATAGGCCCCACTCCTCGGTTCTCGCGCTTGTGGCGGTCGAGCGGGCCAACCACATTAACTCCGCCGGCGACGGGAAGGGCCCGGTGAGTCCTCTGGTGTTGGAGAATGTGTCGCACGGCCAGCTTCAGGCCTTGTCCGCCGTCCCGGCCGATTGTCCGTCGTTGGATCAGGACCGTCCGGATGGCGCCAGTTCGGCTTATGTCGTTACGCCGCCGGCGATTATGGAAGGCCGCGGCGTTGTGAAGCGGTATGGGAGTAGAGTTCATGTGGTTCCAATGCACGCAGATTGGTTTTCACCGGCTACAGTGCATCGACTGGAGAGACAGGTGGTGCCACATTTTTTCTCAGGAAAATCACCAGAGTTTACTCCTGAGATGTACATGCAAAGTAGGAATGAAATTGTTGCCAAGTACATGGAAAACCCAGAGAAGAGGCTTACAGTTTCTGATTGCACAAAATTAACAAGCCATCTAAATACTGAAGATTTGACTCGAATAGTTCGGTTTCTTGATCACTGGGGAATTATCAATTACTCTGCTGCCGCACCAAGTCCTGAGCCTTGGAATGGTAATTCCTACTTAAGGGAGGAGCAAAATGGTGAGATTCATGTTCCATCAGCTGCGTTGAAGTCGATTGATAGTCTGATCAAATTTGACAAGCCCAGATGTAGGCTTAAGGCAGCTGATGTTTATAAGTCATTGTCCTGTCATGACGATGATGATGACACCTCTGATTTGGACAACAGAATTCGAAAACGTCTATGTGAAAATCATTGCAATTATTGTTCTTGTTCTCTTCCCAGTGTATGCTATCAGTCACAGAAGGAGGTTGATGTACTGCTCTGCTCTGACTGCTTCCATGAGGGAAGATATGTTGTGGGCCATTCAAGCATAGATTTCATACGAGTGGATTCAACAAAAGATTATGGCGATCTAGATGGGGAAAATTGGACTGATCAAGAAACCCTACTGCTGCTTGAGGCCATGGAAATCTATAATGAGAACTGGAATGAAATTGCAGAGCATGTTGGTACAAAGTCAAAAGCGCAATGCATACTTCATTTTCTACGTTTGCCTGTGGAGGATGGCCTGCTGGAAAATATTGAAGTTCCAAAGATGCCTCTGTCATCCAACTCATCAAATAGAGATGATCATGGCGGATTTCATTCAACTTCAAATGGGAATTCAGCAGGATCCTGCCTACAAGATGGTGATTCTGAAAGCAGGTTCCCTTTTGCAAATTCTGGGAATCCAGTCATGTCCCTGGTTGCCTTTCTGGCCTCTTCTGTTGGGCCAAGAGTCGCTGCATCTTGTGCCCATGCAGCCTTGGCAGTGTTGTCTGAGGACAATGGCTTACCTGCTTCTGGAAGTAATTTGCAGGAAGGATCAGGAGGACATAGGATGAACTTGGAGAGCATGCATGGTCAAGGTGGCGCTCATAAAAATATTGCAAATTCAGTTCAGCAGAAGGATGAGAAATCAGCAGGACAAGGTTCTTGGGGTAAAAATGAGGCAGGGGCGACTCCAGTACCTGCAGAAAAAGTTAAAGCTGCTGCCAAAGCTGGCCTTGCTGCTGCTGCAATAAAAGCAAAATTGTTTGCTGATCATGAAGAACGGGAAATTCAGAGGTTATCTGCTAATATTGTAAATCATCAGGTAAATCTAGTGCTTACTGCAATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

652

Amino Acids

71.06

Weight (kDa)

5.35

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	190 - 269	1.4e-19	SWIRM domain
Myb_DNA-binding	PF00249	406 - 448	3.1e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	408 - 450	2.9e-08	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	612 - 645	2.3e-08	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21700
fragaria_vesca	FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500 FvH4_2g27500
malus_domestica	MD00G1030000.v1.1 MD00G1041900.v1.1
prunus_persica	Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1 Prupe.1G492600_v2.0.a1
pyrus_communis	pycom116g00060 pycom15g30900
rosa_chinensis	RchiOBHm_Chr6g0296331
rosa_laevigata	RLG00000011705
rosa_multiflora	Rmu_co8413639.1_g000001 Rmu_sc0001478.1_g000003 Rmu_sc0014424.1_g000002 Rmu_sc0042048.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346270 Rroxscaffold_7G00171620 Rroxscaffold_7G00178460
rosa_rugosa	Rorug06G0261200
rosa_samantha	Rh6AG372900 Rh6BG381000 Rh6CG386200 Rh6DG373700
rosa_wichuraiana	Rw6G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	966
Acc36I	ACCTGC	3 cut(s)	1488, 1639, 1813
AccB1I	GGYRCC	2 cut(s)	458, 604
AccBSI	CCGCTC	2 cut(s)	200, 316
AccII	CGCG	6 cut(s)	39, 88, 90, 125, 299, 507
AccIII	TCCGGA	1 cut(s)	451
AclWI	GGATC	5 cut(s)	188, 447, 1461, 1474, 1666
AcoI	YGGCCR	3 cut(s)	126, 391, 420
AcsI	RAATTY	7 cut(s)	72, 923, 1020, 1456, 1513, 1726, 1893
AcuI	CTGAAG	3 cut(s)	12, 383, 774
AcyI	GRCGYC	2 cut(s)	117, 459
AfaI	GTAC	5 cut(s)	653, 686, 1110, 1306, 1803
AfiI	CCNNNNNNNGG	8 cut(s)	276, 289, 345, 400, 839, 855, 942, 1637
AflII	CTTAAG	2 cut(s)	853, 947
AgsI	TTSAA	6 cut(s)	901, 1161, 1188, 1379, 1443, 1449
AjnI	CCWGG	1 cut(s)	1536
AluBI	AGCT	6 cut(s)	8, 397, 893, 956, 1823, 1835
AluI	AGCT	6 cut(s)	8, 397, 893, 956, 1823, 1835
Alw26I	GTCTC	2 cut(s)	203, 589
AlwI	GGATC	5 cut(s)	188, 447, 1461, 1474, 1666
AlwNI	CAGNNNCTG	2 cut(s)	719, 1805
Aor13HI	TCCGGA	1 cut(s)	451
ApaI	GGGCCC	1 cut(s)	356
ApoI	RAATTY	7 cut(s)	72, 923, 1020, 1456, 1513, 1726, 1893
AspLEI	GCGC	7 cut(s)	39, 90, 179, 301, 461, 1321, 1709
AspS9I	GGNCC	9 cut(s)	64, 217, 279, 318, 352, 353, 445, 1153, 1565
AsuC2I	CCSGG	2 cut(s)	356, 419
AsuHPI	GGTGA	5 cut(s)	370, 561, 621, 884, 1496
AsuII	TTCGAA	1 cut(s)	1024
AvaII	GGWCC	3 cut(s)	64, 217, 445
BaeGI	GKGCMC	2 cut(s)	356, 1591
BaeI	ACNNNNGTAYC	2 cut(s)	1785, 1818
BamHI	GGATCC	1 cut(s)	1466
BanI	GGYRCC	2 cut(s)	458, 604
BanII	GRGCYC	2 cut(s)	234, 356
BauI	CACGAG	1 cut(s)	206
BccI	CCATC	7 cut(s)	31, 449, 750, 895, 1205, 1352, 1475
BceAI	ACGGC	2 cut(s)	398, 406
BciT130I	CCWGG	1 cut(s)	1538
BclI	TGATCA	5 cut(s)	784, 918, 1228, 1423, 1876
BcnI	CCSGG	2 cut(s)	356, 419
BcoDI	GTCTC	2 cut(s)	203, 589
BfaI	CTAG	3 cut(s)	174, 1208, 1937
BfmI	CTRYAG	2 cut(s)	576, 1806
BfoI	RGCGCY	3 cut(s)	180, 462, 1710
BfrI	CTTAAG	2 cut(s)	853, 947
BfuAI	ACCTGC	3 cut(s)	1488, 1639, 1813
BglI	GCCNNNNNGGC	4 cut(s)	125, 419, 467, 1550
Bme1390I	CCNGG	3 cut(s)	356, 419, 1538
Bme18I	GGWCC	3 cut(s)	64, 217, 445
BmgT120I	GGNCC	9 cut(s)	64, 217, 279, 318, 352, 353, 445, 1153, 1565
BmrFI	CCNGG	3 cut(s)	356, 419, 1538
BmrI	ACTGGG	2 cut(s)	799, 1068
BmsI	GCATC	3 cut(s)	592, 1380, 1589
BmuI	ACTGGG	2 cut(s)	799, 1068
BoxI	GACNNNNGTC	1 cut(s)	215
BpmI	CTGGAG	2 cut(s)	611, 1782
Bpu10I	CCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	1 cut(s)	1024
BpuEI	CTTGAG	1 cut(s)	1271
BpuMI	CCSGG	2 cut(s)	356, 419
BsaHI	GRCGYC	2 cut(s)	117, 459
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	8 cut(s)	123, 213, 288, 505, 833, 1257, 1536, 1599
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	6 cut(s)	149, 179, 317, 347, 368, 398
Bsc4I	CCNNNNNNNGG	8 cut(s)	276, 289, 345, 400, 839, 855, 942, 1637
Bse118I	RCCGGY	3 cut(s)	338, 487, 571
Bse1I	ACTGG	7 cut(s)	462, 594, 794, 1074, 1283, 1526, 1799
Bse3DI	GCAATG	2 cut(s)	1045, 1328
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	1538
BseDI	CCNNGG	8 cut(s)	123, 213, 288, 505, 833, 1257, 1536, 1599
BseGI	GGATG	5 cut(s)	460, 1363, 1400, 1680, 1750
BseLI	CCNNNNNNNGG	8 cut(s)	276, 289, 345, 400, 839, 855, 942, 1637
BseMI	GCAATG	2 cut(s)	1045, 1328
BseMII	CTCAG	4 cut(s)	633, 636, 819, 1605
BseNI	ACTGG	7 cut(s)	462, 594, 794, 1074, 1283, 1526, 1799
BseRI	GAGGAG	2 cut(s)	277, 875
BseSI	GKGCMC	2 cut(s)	356, 1591
BseX3I	CGGCCG	2 cut(s)	126, 420
Bsh1236I	CGCG	6 cut(s)	39, 88, 90, 125, 299, 507
Bsh1285I	CGRYCG	3 cut(s)	129, 312, 423
BshNI	GGYRCC	2 cut(s)	458, 604
BsiEI	CGRYCG	3 cut(s)	129, 312, 423
BsiSI	CCGG	6 cut(s)	339, 356, 419, 452, 488, 572
BslFI	GGGAC	3 cut(s)	77, 401, 1519
BslI	CCNNNNNNNGG	8 cut(s)	276, 289, 345, 400, 839, 855, 942, 1637
BsmAI	GTCTC	2 cut(s)	203, 589
BsmFI	GGGAC	3 cut(s)	77, 401, 1519
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	1024
Bsp120I	GGGCCC	1 cut(s)	352
Bsp1286I	GDGCHC	3 cut(s)	234, 356, 1591
Bsp13I	TCCGGA	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	651
Bsp19I	CCATGG	1 cut(s)	1257
BspCNI	CTCAG	4 cut(s)	632, 637, 820, 1606
BspEI	TCCGGA	1 cut(s)	451
BspFNI	CGCG	6 cut(s)	39, 88, 90, 125, 299, 507
BspHI	TCATGA	2 cut(s)	982, 1879
BspMAI	CTGCAG	1 cut(s)	1810
BspMI	ACCTGC	3 cut(s)	1488, 1639, 1813
BspPI	GGATC	5 cut(s)	188, 447, 1461, 1474, 1666
BspT104I	TTCGAA	1 cut(s)	1024
BspT107I	GGYRCC	2 cut(s)	458, 604
BspTI	CTTAAG	2 cut(s)	853, 947
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	2 cut(s)	200, 316
BsrDI	GCAATG	2 cut(s)	1045, 1328
BsrFI	RCCGGY	3 cut(s)	338, 487, 571
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	7 cut(s)	462, 594, 794, 1074, 1283, 1526, 1799
BssAI	RCCGGY	3 cut(s)	338, 487, 571
BssECI	CCNNGG	8 cut(s)	123, 213, 288, 505, 833, 1257, 1536, 1599
BssNI	GRCGYC	2 cut(s)	117, 459
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	3 cut(s)	833, 1257, 1599
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	1538
Bst4CI	ACNGT	5 cut(s)	227, 271, 449, 580, 715
Bst6I	CTCTTC	3 cut(s)	698, 1074, 1561
BstACI	GRCGYC	2 cut(s)	117, 459
BstAFI	CTTAAG	2 cut(s)	853, 947
BstAPI	GCANNNNNTGC	1 cut(s)	1586
BstAUI	TGTACA	1 cut(s)	651
BstBI	TTCGAA	1 cut(s)	1024
BstDEI	CTNAG	4 cut(s)	619, 645, 828, 1614
BstDSI	CCRYGG	3 cut(s)	123, 505, 1257
BstENI	CCTNNNNNAGG	1 cut(s)	853
BstF5I	GGATG	5 cut(s)	460, 1363, 1400, 1680, 1750
BstFNI	CGCG	6 cut(s)	39, 88, 90, 125, 299, 507
BstH2I	RGCGCY	3 cut(s)	180, 462, 1710
BstHHI	GCGC	7 cut(s)	39, 90, 179, 301, 461, 1321, 1709
BstMAI	GTCTC	2 cut(s)	203, 589
BstMCI	CGRYCG	3 cut(s)	129, 312, 423
BstNI	CCWGG	1 cut(s)	1538
BstNSI	RCATGY	3 cut(s)	658, 1301, 1693
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	3 cut(s)	354, 417, 1536
BstSFI	CTRYAG	2 cut(s)	576, 1806
BstSLI	GKGCMC	2 cut(s)	356, 1591
BstUI	CGCG	6 cut(s)	39, 88, 90, 125, 299, 507
BstX2I	RGATCY	1 cut(s)	1466
BstXI	CCANNNNNNTGG	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	1466
BstZI	CGGCCG	2 cut(s)	126, 420
BtgI	CCRYGG	3 cut(s)	123, 505, 1257
BtsCI	GGATG	5 cut(s)	460, 1363, 1400, 1680, 1750
BtsI	GCAGTG	1 cut(s)	1611
BtsIMutI	CAGTG	4 cut(s)	585, 787, 1081, 1611
BveI	ACCTGC	3 cut(s)	1488, 1639, 1813
CaiI	CAGNNNCTG	2 cut(s)	719, 1805
CciI	TCATGA	2 cut(s)	982, 1879
CciNI	GCGGCCGC	1 cut(s)	126
CfoI	GCGC	7 cut(s)	39, 90, 179, 301, 461, 1321, 1709
Cfr10I	RCCGGY	3 cut(s)	338, 487, 571
Cfr13I	GGNCC	9 cut(s)	64, 217, 279, 318, 352, 353, 445, 1153, 1565
Cfr42I	CCGCGG	2 cut(s)	126, 508
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	5 cut(s)	652, 685, 1109, 1305, 1802
CviQI	GTAC	5 cut(s)	652, 685, 1109, 1305, 1802
DdeI	CTNAG	4 cut(s)	619, 645, 828, 1614
DinI	GGCGCC	1 cut(s)	460
EaeI	YGGCCR	3 cut(s)	126, 391, 420
EagI	CGGCCG	2 cut(s)	126, 420
Eam1104I	CTCTTC	3 cut(s)	698, 1074, 1561
EarI	CTCTTC	3 cut(s)	698, 1074, 1561
EciI	GGCGGA	4 cut(s)	224, 325, 400, 1446
EclXI	CGGCCG	2 cut(s)	126, 420
Eco130I	CCWWGG	3 cut(s)	833, 1257, 1599
Eco147I	AGGCCT	1 cut(s)	404
Eco24I	GRGCYC	2 cut(s)	234, 356
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	3 cut(s)	64, 217, 445
Eco52I	CGGCCG	2 cut(s)	126, 420
Eco57I	CTGAAG	3 cut(s)	12, 383, 774
EcoNI	CCTNNNNNAGG	1 cut(s)	853
EcoO109I	RGGNCCY	4 cut(s)	64, 217, 279, 352
EcoRI	GAATTC	2 cut(s)	1020, 1456
EcoRII	CCWGG	1 cut(s)	1536
EcoT14I	CCWWGG	3 cut(s)	833, 1257, 1599
EcoT22I	ATGCAT	2 cut(s)	1328, 1695
EcoT38I	GRGCYC	2 cut(s)	234, 356
EgeI	GGCGCC	1 cut(s)	460
EheI	GGCGCC	1 cut(s)	460
ErhI	CCWWGG	3 cut(s)	833, 1257, 1599
FalI	AAGNNNNNCTT	2 cut(s)	1824, 1856
FaqI	GGGAC	3 cut(s)	77, 401, 1519
FauI	CCCGC	4 cut(s)	54, 93, 205, 309
FbaI	TGATCA	5 cut(s)	784, 918, 1228, 1423, 1876
FokI	GGATG	5 cut(s)	467, 1370, 1387, 1687, 1757
FriOI	GRGCYC	2 cut(s)	234, 356
FspBI	CTAG	3 cut(s)	174, 1208, 1937
GlaI	GCGC	7 cut(s)	38, 89, 178, 300, 460, 1320, 1708
GsuI	CTGGAG	2 cut(s)	611, 1782
HaeII	RGCGCY	3 cut(s)	180, 462, 1710
HapII	CCGG	6 cut(s)	339, 356, 419, 452, 488, 572
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	7 cut(s)	39, 90, 179, 301, 461, 1321, 1709
Hin1I	GRCGYC	2 cut(s)	117, 459
Hin6I	GCGC	7 cut(s)	37, 88, 177, 299, 459, 1319, 1707
HinP1I	GCGC	7 cut(s)	37, 88, 177, 299, 459, 1319, 1707
HinfI	GANTC	9 cut(s)	164, 361, 763, 877, 1184, 1487, 1522, 1572, 1795
HpaII	CCGG	6 cut(s)	339, 356, 419, 452, 488, 572
HphI	GGTGA	5 cut(s)	370, 561, 621, 884, 1496
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	9 cut(s)	31, 169, 721, 918, 1006, 1123, 1492, 1615, 1899
Hpy8I	GTNNAC	1 cut(s)	639
HpyAV	CCTTC	7 cut(s)	24, 28, 343, 494, 1090, 1649, 1735
HpyCH4III	ACNGT	5 cut(s)	227, 271, 449, 580, 715
HpyCH4IV	ACGT	2 cut(s)	1030, 1342
HpyF3I	CTNAG	4 cut(s)	619, 645, 828, 1614
HpySE526I	ACGT	2 cut(s)	1030, 1342
Hsp92I	GRCGYC	2 cut(s)	117, 459
HspAI	GCGC	7 cut(s)	37, 88, 177, 299, 459, 1319, 1707
KasI	GGCGCC	1 cut(s)	458
KflI	GGGWCCC	1 cut(s)	64
Kpn2I	TCCGGA	1 cut(s)	451
KroI	GCCGGC	2 cut(s)	338, 487
KroNI	GCCGGC	2 cut(s)	340, 489
Ksp22I	TGATCA	5 cut(s)	784, 918, 1228, 1423, 1876
KspI	CCGCGG	2 cut(s)	126, 508
LmnI	GCTCC	3 cut(s)	205, 237, 862
LweI	GCATC	3 cut(s)	592, 1380, 1589
MaeI	CTAG	3 cut(s)	174, 1208, 1937
MaeII	ACGT	2 cut(s)	1030, 1342
MaeIII	GTNAC	2 cut(s)	478, 1089
MbiI	CCGCTC	2 cut(s)	200, 316
MboII	GAAGA	7 cut(s)	18, 715, 767, 1061, 1152, 1548, 1895
MflI	RGATCY	1 cut(s)	1466
MhlI	GDGCHC	3 cut(s)	234, 356, 1591
Mly113I	GGCGCC	1 cut(s)	459
MlyI	GAGTC	5 cut(s)	158, 370, 757, 1581, 1789
MmeI	TCCRAC	4 cut(s)	192, 354, 417, 1428
Mph1103I	ATGCAT	2 cut(s)	1328, 1695
MreI	CGCCGGCG	2 cut(s)	338, 487
MroI	TCCGGA	1 cut(s)	451
MroNI	GCCGGC	2 cut(s)	338, 487
MseI	TTAA	5 cut(s)	330, 734, 854, 948, 1818
MslI	CAYNNNNRTG	2 cut(s)	987, 1178
MspA1I	CMGCKG	5 cut(s)	125, 131, 507, 893, 956
MspCI	CTTAAG	2 cut(s)	853, 947
MspI	CCGG	6 cut(s)	339, 356, 419, 452, 488, 572
MspR9I	CCNGG	3 cut(s)	356, 419, 1538
MvaI	CCWGG	1 cut(s)	1538
MvnI	CGCG	6 cut(s)	39, 88, 90, 125, 299, 507
NaeI	GCCGGC	2 cut(s)	340, 489
NarI	GGCGCC	1 cut(s)	459
NciI	CCSGG	2 cut(s)	356, 419
NcoI	CCATGG	1 cut(s)	1257
NgoMIV	GCCGGC	2 cut(s)	338, 487
NmuCI	GTSAC	1 cut(s)	1089
NotI	GCGGCCGC	1 cut(s)	126
NsiI	ATGCAT	2 cut(s)	1328, 1695
NspI	RCATGY	3 cut(s)	658, 1301, 1693
NspV	TTCGAA	1 cut(s)	1024
PaeI	GCATGC	1 cut(s)	1693
PagI	TCATGA	2 cut(s)	982, 1879
PceI	AGGCCT	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	8 cut(s)	99, 102, 108, 111, 144, 159, 165, 488
PdiI	GCCGGC	2 cut(s)	340, 489
PfeI	GAWTC	4 cut(s)	877, 1184, 1487, 1522
PleI	GAGTC	5 cut(s)	158, 369, 757, 1580, 1789
PluTI	GGCGCC	1 cut(s)	462
PpsI	GAGTC	5 cut(s)	158, 369, 757, 1580, 1789
PpuMI	RGGWCCY	2 cut(s)	64, 217
PshAI	GACNNNNGTC	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	966
Psp5II	RGGWCCY	2 cut(s)	64, 217
Psp6I	CCWGG	1 cut(s)	1536
PspGI	CCWGG	1 cut(s)	1536
PspOMI	GGGCCC	1 cut(s)	352
PspPI	GGNCC	9 cut(s)	64, 217, 279, 318, 352, 353, 445, 1153, 1565
PspPPI	RGGWCCY	2 cut(s)	64, 217
PstI	CTGCAG	1 cut(s)	1810
PstNI	CAGNNNCTG	2 cut(s)	719, 1805
PsuI	RGATCY	1 cut(s)	1466
PvuII	CAGCTG	2 cut(s)	893, 956
RsaI	GTAC	5 cut(s)	653, 686, 1110, 1306, 1803
RsaNI	GTAC	5 cut(s)	652, 685, 1109, 1305, 1802
RseI	CAYNNNNRTG	2 cut(s)	987, 1178
SacII	CCGCGG	2 cut(s)	126, 508
SaqAI	TTAA	5 cut(s)	330, 734, 854, 948, 1818
Sau96I	GGNCC	9 cut(s)	64, 217, 279, 318, 352, 353, 445, 1153, 1565
SchI	GAGTC	5 cut(s)	158, 370, 757, 1581, 1789
ScrFI	CCNGG	3 cut(s)	356, 419, 1538
SduI	GDGCHC	3 cut(s)	234, 356, 1591
SfaNI	GCATC	3 cut(s)	592, 1380, 1589
SfcI	CTRYAG	2 cut(s)	576, 1806
SfoI	GGCGCC	1 cut(s)	460
Sfr303I	CCGCGG	2 cut(s)	126, 508
SfuI	TTCGAA	1 cut(s)	1024
SgrAI	CRCCGGYG	2 cut(s)	338, 487
SgrBI	CCGCGG	2 cut(s)	126, 508
SinI	GGWCC	3 cut(s)	64, 217, 445
SmiMI	CAYNNNNRTG	2 cut(s)	987, 1178
SmlI	CTYRAG	3 cut(s)	853, 947, 1250
SmoI	CTYRAG	3 cut(s)	853, 947, 1250
SphI	GCATGC	1 cut(s)	1693
SseBI	AGGCCT	1 cut(s)	404
SspDI	GGCGCC	1 cut(s)	458
SspI	AATATT	3 cut(s)	1375, 1720, 1915
SspMI	CTAG	3 cut(s)	174, 1208, 1937
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	354, 417, 1536
StyI	CCWWGG	3 cut(s)	833, 1257, 1599
TaaI	ACNGT	5 cut(s)	227, 271, 449, 580, 715
TaiI	ACGT	2 cut(s)	1033, 1345
TaqI	TCGA	7 cut(s)	153, 222, 312, 586, 766, 905, 1024
TaqII	GACCGA	1 cut(s)	227
TatI	WGTACW	3 cut(s)	651, 684, 1108
TfiI	GAWTC	4 cut(s)	877, 1184, 1487, 1522
Tru1I	TTAA	5 cut(s)	330, 734, 854, 948, 1818
Tru9I	TTAA	5 cut(s)	330, 734, 854, 948, 1818
TscAI	CASTG	4 cut(s)	585, 794, 1081, 1611
TseFI	GTSAC	1 cut(s)	1089
Tsp45I	GTSAC	1 cut(s)	1089
TspDTI	ATGAA	9 cut(s)	527, 684, 869, 1162, 1299, 1322, 1427, 1691, 1896
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	4 cut(s)	585, 794, 1081, 1611
Vha464I	CTTAAG	2 cut(s)	853, 947
VpaK11BI	GGWCC	3 cut(s)	64, 217, 445
XagI	CCTNNNNNAGG	1 cut(s)	853
XapI	RAATTY	7 cut(s)	72, 923, 1020, 1456, 1513, 1726, 1893
XbaI	TCTAGA	1 cut(s)	1207
XceI	RCATGY	3 cut(s)	658, 1301, 1693
XspI	CTAG	3 cut(s)	174, 1208, 1937
Zsp2I	ATGCAT	2 cut(s)	1328, 1695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.