FvH4_2g31780

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008843
Physical Location & Seq
Reverse (-)
24286911 .. 24287495
585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31780.t1

Sequence Viewer

Length: 585 bp
ATGAAGAATTACCAGAAATGCGCTTCTTGCAGACACAGCAGGACCAAATGCAAGCAAGATTGTTTGCTAGCTCCATACTTCCCTGCCCATATGCACCAGAAATTCAAGAATGCCTACCAGGTGTTCGGCAGAAGTTACATTACCAAGTTGCTCCATAACCTCAACGAAACGCCTCAGAAAAGAAACGTTGCCATGAAGAACATCATAGCCGAAGCCGATAGCCGCATCGCTGACCCAGTCGGCGGCTCTTATCGTGTTGTGAAGCAGCAATGTGCTGACCTAAGCAGGTTGCAGTGGAAGGTTGCACAGCAAGAGTTGGAGCTCCAGCAATTGCGCCGTCAAGTGAATGCTAATGTGGCTATGGCACAACCATCTTTGTATCAAGAACAGGGCTACCAGAATCTTGGAGAACAGATCGGCAATGCAAATCAAGGCCAAGGCAACTTGCTTCACCAAGGAGAGGGCAACTTTGTTCAGGGTTATGGTCAGCGAATTCGACAAGAACAGGCTAGCATTGATGCTCAGAGTCGGGCATATGTTCATCCACCTTCCCCTTCATCATCAACAGCTTCTTCCAGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

195

Amino Acids

21.91

Weight (kDa)

9.62

Isoelectric Point (pI)

60.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 6 - 103 7e-26 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AciI CCGC 2 cut(s) 223, 243
AclI AACGTT 1 cut(s) 186
AcsI RAATTY 2 cut(s) 101, 492
AfiI CCNNNNNNNGG 2 cut(s) 242, 460
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 3 cut(s) 71, 322, 569
AluI AGCT 3 cut(s) 71, 322, 569
Alw21I GWGCWC 1 cut(s) 324
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 2 cut(s) 101, 492
AspLEI GCGC 2 cut(s) 23, 336
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 443
AsuNHI GCTAGC 2 cut(s) 67, 509
AvaII GGWCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 324
BarI GAAGNNNNNNTAC 2 cut(s) 124, 156
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 379
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 2 cut(s) 68, 510
BfuAI ACCTGC 1 cut(s) 276
BisI GCNGC 3 cut(s) 223, 244, 266
BlsI GCNGC 3 cut(s) 224, 245, 267
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 2 cut(s) 234, 508
BmtI GCTAGC 2 cut(s) 71, 513
BmuI ACTGGG 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 308
Bpu10I CCTNAGC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 436, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 460
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 2 cut(s) 275, 427
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 436, 454
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 2 cut(s) 242, 460
BseMI GCAATG 2 cut(s) 275, 427
BseMII CTCAG 2 cut(s) 188, 536
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 242, 460
BsmI GAATGC 2 cut(s) 115, 352
BsnI GGCC 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 414
BspACI CCGC 2 cut(s) 223, 243
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 2 cut(s) 187, 535
BspMI ACCTGC 1 cut(s) 276
BspOI GCTAGC 2 cut(s) 71, 513
BsrDI GCAATG 2 cut(s) 275, 427
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 436, 454
BssMI GATC 1 cut(s) 414
BssT1I CCWWGG 2 cut(s) 436, 454
Bst2UI CCWGG 1 cut(s) 119
BstC8I GCNNGC 3 cut(s) 53, 69, 511
BstDEI CTNAG 3 cut(s) 174, 281, 522
BstF5I GGATG 1 cut(s) 541
BstHHI GCGC 2 cut(s) 23, 336
BstKTI GATC 1 cut(s) 417
BstMBI GATC 1 cut(s) 414
BstMWI GCNNNNNNNGC 3 cut(s) 27, 36, 356
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 404
BsuRI GGCC 1 cut(s) 435
BtgZI GCGATG 1 cut(s) 211
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 299
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 53, 69, 511
CfoI GCGC 2 cut(s) 23, 336
Cfr13I GGNCC 1 cut(s) 42
CsiI ACCWGGT 1 cut(s) 117
CviAII CATG 1 cut(s) 193
DdeI CTNAG 3 cut(s) 174, 281, 522
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 2 cut(s) 436, 454
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 436, 454
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 2 cut(s) 436, 454
FaeI CATG 1 cut(s) 196
FatI CATG 1 cut(s) 192
FauNDI CATATG 2 cut(s) 90, 535
Fnu4HI GCNGC 3 cut(s) 223, 244, 266
FokI GGATG 1 cut(s) 528
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 3 cut(s) 223, 244, 266
FspBI CTAG 2 cut(s) 68, 510
GlaI GCGC 2 cut(s) 22, 335
GluI GCNGC 3 cut(s) 223, 244, 266
GsuI CTGGAG 1 cut(s) 308
HaeIII GGCC 1 cut(s) 435
HhaI GCGC 2 cut(s) 23, 336
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 2 cut(s) 21, 334
HinP1I GCGC 2 cut(s) 21, 334
HinfI GANTC 2 cut(s) 400, 526
HphI GGTGA 1 cut(s) 443
Hpy188I TCNGA 2 cut(s) 177, 525
Hpy188III TCNNGA 3 cut(s) 106, 383, 576
HpyAV CCTTC 3 cut(s) 292, 558, 564
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 6 cut(s) 30, 51, 94, 292, 305, 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 36, 356
HpyF3I CTNAG 3 cut(s) 174, 281, 522
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 2 cut(s) 21, 334
Kzo9I GATC 1 cut(s) 414
LmnI GCTCC 4 cut(s) 76, 156, 319, 327
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 2 cut(s) 234, 508
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 2 cut(s) 68, 510
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 416
MboI GATC 1 cut(s) 414
MboII GAAGA 3 cut(s) 16, 208, 564
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 4 cut(s) 7, 101, 329, 492
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 3 cut(s) 170, 183, 454
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 329
Mva1269I GAATGC 2 cut(s) 115, 352
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 27, 36, 356
NdeI CATATG 2 cut(s) 90, 535
NdeII GATC 1 cut(s) 414
NheI GCTAGC 2 cut(s) 67, 509
NlaIII CATG 1 cut(s) 196
PctI GAATGC 2 cut(s) 115, 352
PfeI GAWTC 1 cut(s) 400
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 3 cut(s) 224, 245, 267
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspPI GGNCC 1 cut(s) 42
PsyI GACNNNGTC 1 cut(s) 236
SacI GAGCTC 1 cut(s) 324
SatI GCNGC 3 cut(s) 223, 244, 266
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 324
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 2 cut(s) 234, 508
SinI GGWCC 1 cut(s) 42
Sse9I AATT 4 cut(s) 7, 101, 329, 492
SsiI CCGC 2 cut(s) 223, 243
SspMI CTAG 2 cut(s) 68, 510
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 2 cut(s) 436, 454
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 496
TasI AATT 4 cut(s) 7, 101, 329, 492
TauI GCSGC 2 cut(s) 225, 246
TfiI GAWTC 1 cut(s) 400
TscAI CASTG 1 cut(s) 299
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 4 cut(s) 17, 209, 530, 546
TspRI CASTG 1 cut(s) 299
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 2 cut(s) 101, 492
XspI CTAG 2 cut(s) 68, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.