Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008843

Physical Location & Seq

Genomic Coordinates Forward (+)

35911445 .. 35912561

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G411200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAGCACCAAACTTGTGCCGCTTGTAGATTCCAGCGCAAGAAATGTACCGAAGACTGCCTTATGGCCCCATATTTCCCTGCAACCAGGTTTCAACAATTTCTGAATGCACACAAACTGTTTGGTGTGGGCAAAATCACCAAAACCCTCAATAGCGTCTCTCCTCAGCAGAGAAGCTCTGCCATGTACAGCGTCAAAGCCGAAGCCGAGTACCGTGCCAGGGACCCTGTTGGTGGCTGCTACAATGAAATAAAGTCGTTGCTGTGGAAGATCAGAACAACTGAGGATGAACTCCAACATGTACATTCTCAGCTTTGCATGTTTCGTGCCGGAGGAGAGAATGCTATGGCTCATCCTTTGGACGGCTATGAATACAATGTCGTTCAAGATGTTGAATATGATTCGCAGCTTCATCATCAACTACAGCAGAACATTGTTCAAGAACAGAGCGGTGTTGTGGAAAATCATCAAGAACAGTGTTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

163

Amino Acids

18.62

Weight (kDa)

6.7

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31770 FvH4_2g31780
malus_domestica	MD15G1058700.v1.1
prunus_persica	Prupe.1G411200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0311041 RchiOBHm_Chr6g0311051
rosa_laevigata	RLG00000010440
rosa_multiflora	Rmu_co8111360.1_g000001 Rmu_sc0012235.1_g000005 Rmu_sc0014619.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158070 Rroxscaffold_7G00158080
rosa_rugosa	Rorug06G0384900 Rorug06G0384900
rosa_samantha	Rh6AG498800 Rh6AG498900 Rh6BG509400 Rh6BG509500 Rh6CG515200 Rh6CG515300 Rh6DG501800
rosa_wichuraiana	Rw6G043440 Rw6G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	450
AciI	CCGC	2 cut(s)	21, 450
AfaI	GTAC	4 cut(s)	49, 188, 212, 303
AfiI	CCNNNNNNNGG	3 cut(s)	220, 233, 362
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	4 cut(s)	95, 386, 395, 440
AjnI	CCWGG	2 cut(s)	86, 218
AluBI	AGCT	3 cut(s)	177, 313, 409
AluI	AGCT	3 cut(s)	177, 313, 409
Alw26I	GTCTC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	237, 406
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	67, 223
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	224, 418
BceAI	ACGGC	1 cut(s)	379
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	88, 220
BcoDI	GTCTC	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	422
BisI	GCNGC	3 cut(s)	21, 238, 407
BlsI	GCNGC	3 cut(s)	22, 239, 408
Bme1390I	CCNGG	2 cut(s)	88, 220
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	67, 223
BmiI	GGNNCC	3 cut(s)	69, 224, 225
BmrFI	CCNGG	2 cut(s)	88, 220
BpiI	GAAGAC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 233, 362
BseBI	CCWGG	2 cut(s)	88, 220
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	292, 352
BseLI	CCNNNNNNNGG	3 cut(s)	220, 233, 362
BseMII	CTCAG	3 cut(s)	179, 273, 323
BseRI	GAGGAG	2 cut(s)	153, 348
BseXI	GCAGC	2 cut(s)	224, 418
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	220, 233, 362
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	2 cut(s)	112, 346
BsnI	GGCC	1 cut(s)	68
Bsp1407I	TGTACA	2 cut(s)	186, 301
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	2 cut(s)	21, 450
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	3 cut(s)	178, 274, 322
BspLI	GGNNCC	3 cut(s)	69, 224, 225
BsrBI	CCGCTC	1 cut(s)	450
BsrGI	TGTACA	2 cut(s)	186, 301
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	88, 220
Bst4CI	ACNGT	3 cut(s)	120, 215, 477
BstAUI	TGTACA	2 cut(s)	186, 301
BstDEI	CTNAG	3 cut(s)	165, 282, 309
BstF5I	GGATG	2 cut(s)	292, 352
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	270
BstNI	CCWGG	2 cut(s)	88, 220
BstNSI	RCATGY	2 cut(s)	302, 322
BstSCI	CCNGG	2 cut(s)	86, 218
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	224, 418
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	292, 352
BtsIMutI	CAGTG	1 cut(s)	482
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	67, 223
CseI	GACGC	2 cut(s)	145, 181
CsiI	ACCWGGT	1 cut(s)	86
Csp6I	GTAC	4 cut(s)	48, 187, 211, 302
CviAII	CATG	3 cut(s)	184, 299, 319
CviJI	RGCY	9 cut(s)	68, 177, 200, 206, 237, 313, 350, 366, 409
CviKI_1	RGCY	9 cut(s)	68, 177, 200, 206, 237, 313, 350, 366, 409
CviQI	GTAC	4 cut(s)	48, 187, 211, 302
DdeI	CTNAG	3 cut(s)	165, 282, 309
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	86, 218
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	3 cut(s)	187, 302, 322
FaiI	YATR	8 cut(s)	65, 73, 185, 300, 320, 347, 369, 399
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	183, 298, 318
Fnu4HI	GCNGC	3 cut(s)	21, 238, 407
FokI	GGATG	2 cut(s)	299, 339
Fsp4HI	GCNGC	3 cut(s)	21, 238, 407
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	21, 238, 407
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	2 cut(s)	145, 181
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	187, 302, 322
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	30, 401
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	105, 275
Hpy188III	TCNNGA	3 cut(s)	386, 440, 470
HpyCH4III	ACNGT	3 cut(s)	120, 215, 477
HpyCH4V	TGCA	3 cut(s)	83, 110, 318
HpyF3I	CTNAG	3 cut(s)	165, 282, 309
Hsp92II	CATG	3 cut(s)	187, 302, 322
HspAI	GCGC	1 cut(s)	37
KflI	GGGWCCC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	270
LpnPI	CCDG	8 cut(s)	47, 73, 93, 100, 205, 232, 240, 343
Lsp1109I	GCAGC	2 cut(s)	224, 418
MabI	ACCWGGT	1 cut(s)	86
MalI	GATC	1 cut(s)	272
MbiI	CCGCTC	1 cut(s)	450
MboI	GATC	1 cut(s)	270
MboII	GAAGA	2 cut(s)	65, 280
MluCI	AATT	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	4 cut(s)	158, 174, 277, 326
MseI	TTAA	1 cut(s)	487
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	88, 220
Mva1269I	GAATGC	2 cut(s)	112, 346
MvaI	CCWGG	2 cut(s)	88, 220
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	3 cut(s)	187, 302, 322
NlaIV	GGNNCC	3 cut(s)	69, 224, 225
NmeAIII	GCCGAG	1 cut(s)	232
NspI	RCATGY	2 cut(s)	302, 322
PciI	ACATGT	1 cut(s)	298
PctI	GAATGC	2 cut(s)	112, 346
PfeI	GAWTC	2 cut(s)	30, 401
PkrI	GCNGC	3 cut(s)	22, 239, 408
PpuMI	RGGWCCY	1 cut(s)	223
PscI	ACATGT	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	86, 218
PspGI	CCWGG	2 cut(s)	86, 218
PspN4I	GGNNCC	3 cut(s)	69, 224, 225
PspPI	GGNCC	2 cut(s)	67, 223
PspPPI	RGGWCCY	1 cut(s)	223
RsaI	GTAC	4 cut(s)	49, 188, 212, 303
RsaNI	GTAC	4 cut(s)	48, 187, 211, 302
SaqAI	TTAA	1 cut(s)	487
SatI	GCNGC	3 cut(s)	21, 238, 407
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	2 cut(s)	67, 223
ScrFI	CCNGG	2 cut(s)	88, 220
SetI	ASST	4 cut(s)	92, 179, 315, 411
SexAI	ACCWGGT	1 cut(s)	86
SfcI	CTRYAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	223
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	2 cut(s)	21, 450
StyD4I	CCNGG	2 cut(s)	86, 218
TaaI	ACNGT	3 cut(s)	120, 215, 477
TasI	AATT	1 cut(s)	98
TatI	WGTACW	2 cut(s)	186, 301
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	30, 401
Tru1I	TTAA	1 cut(s)	487
Tru9I	TTAA	1 cut(s)	487
TscAI	CASTG	1 cut(s)	482
TseI	GCWGC	2 cut(s)	237, 406
TspDTI	ATGAA	5 cut(s)	17, 261, 303, 384, 401
TspRI	CASTG	1 cut(s)	482
VpaK11BI	GGWCC	1 cut(s)	223
XceI	RCATGY	2 cut(s)	302, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.