Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008843

Physical Location & Seq

Genomic Coordinates Forward (+)

67308094 .. 67309426

Gene Structure 1333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG515300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAACAAGTACCAAAGCTGTGCCTCTTGCAGACACAACCGCTCAAAATGTGTACGGGATTGTCCACTGGCCCCGTACTTCCCTTCGCACATGCACCAAAAATTCAAGAATGCCCGCAAGGTGTTCGGCGAAAGTCACCTGAAGAAGTTGCTCCGGAGCTTACCCCCTCGCAAAAGAAGCACTGCAATGAAGCACATTATAGCGGAAGCTGACATCCGAGTCGCCGACCCGGTTGGTGGAAGTTATAGTCTTATAAGGAACTTGGAGCTGAAGATTGCGGAGGAAGAGGAGGAGCTCCGCCGCTTGCGCAATGTACTTAGTGTGTTTCGTGGCGGAGGTAGTGGTAGTGTTGTGGCACAGCCTTTGGTTCAGAAACAGGGATACATTGTTCAAGAACATGATAACATCAATGATCAGGGATATCATGTTCCAGTACTCCCTCTTGTTCCTGGTGGATTTCTTCATGCACTCCATCAAGAACAGCGCAACAACATGTTTGATTTAAGGGATGAAGTTGTGCCGGAACATGATGTCAACCCAAATCAGGGTGAGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

186

Amino Acids

21.18

Weight (kDa)

8.68

Isoelectric Point (pI)

70.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	6 - 102	2.1e-29	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31770 FvH4_2g31780
malus_domestica	MD15G1058700.v1.1
prunus_persica	Prupe.1G411200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0311041 RchiOBHm_Chr6g0311051
rosa_laevigata	RLG00000010440
rosa_multiflora	Rmu_co8111360.1_g000001 Rmu_sc0012235.1_g000005 Rmu_sc0014619.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158070 Rroxscaffold_7G00158080
rosa_rugosa	Rorug06G0384900 Rorug06G0384900
rosa_samantha	Rh6AG498800 Rh6AG498900 Rh6BG509400 Rh6BG509500 Rh6CG515200 Rh6CG515300 Rh6DG501800
rosa_wichuraiana	Rw6G043440 Rw6G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	308
AccBSI	CCGCTC	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	7 cut(s)	40, 115, 203, 278, 298, 301, 333
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	2 cut(s)	161, 290
AfaI	GTAC	5 cut(s)	11, 54, 77, 315, 435
AfiI	CCNNNNNNNGG	3 cut(s)	236, 544, 545
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	2 cut(s)	106, 392
AjnI	CCWGG	1 cut(s)	448
AloI	GAACNNNNNNTCC	4 cut(s)	372, 404, 411, 443
AluBI	AGCT	5 cut(s)	18, 159, 209, 268, 295
AluI	AGCT	5 cut(s)	18, 159, 209, 268, 295
Alw21I	GWGCWC	1 cut(s)	297
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	101
AspLEI	GCGC	2 cut(s)	309, 486
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	128, 560
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BccI	CCATC	1 cut(s)	480
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
BmcAI	AGTACT	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	230, 450
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	230, 450
BpuMI	CCSGG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 544, 545
Bse1I	ACTGG	2 cut(s)	72, 431
Bse3DI	GCAATG	2 cut(s)	192, 316
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	450
BseGI	GGATG	2 cut(s)	213, 514
BseLI	CCNNNNNNNGG	3 cut(s)	236, 544, 545
BseMI	GCAATG	2 cut(s)	192, 316
BseNI	ACTGG	2 cut(s)	72, 431
BseRI	GAGGAG	2 cut(s)	302, 305
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	154, 230, 521
BslI	CCNNNNNNNGG	3 cut(s)	236, 544, 545
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	7 cut(s)	40, 115, 203, 278, 298, 301, 333
BspANI	GGCC	1 cut(s)	71
BspEI	TCCGGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	72
BsrBI	CCGCTC	1 cut(s)	42
BsrDI	GCAATG	2 cut(s)	192, 316
BsrI	ACTGG	2 cut(s)	72, 431
BssMI	GATC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	450
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	115, 305
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	213, 514
BstHHI	GCGC	2 cut(s)	309, 486
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 306
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	2 cut(s)	94, 496
BstSCI	CCNGG	2 cut(s)	228, 448
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	2 cut(s)	213, 514
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	65, 180
Cac8I	GCNNGC	2 cut(s)	115, 305
CfoI	GCGC	2 cut(s)	309, 486
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	5 cut(s)	10, 53, 76, 314, 434
CviAII	CATG	6 cut(s)	91, 398, 425, 464, 493, 527
CviJI	RGCY	7 cut(s)	18, 71, 159, 209, 268, 295, 361
CviKI_1	RGCY	7 cut(s)	18, 71, 159, 209, 268, 295, 361
CviQI	GTAC	5 cut(s)	10, 53, 76, 314, 434
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	2 cut(s)	287, 348
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	161, 290
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	6 cut(s)	94, 401, 428, 467, 496, 530
FaiI	YATR	9 cut(s)	92, 200, 246, 254, 399, 426, 465, 494, 528
FatI	CATG	6 cut(s)	90, 397, 424, 463, 492, 526
FauI	CCCGC	1 cut(s)	122
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	2 cut(s)	200, 521
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	301
FspI	TGCGCA	1 cut(s)	308
GlaI	GCGC	2 cut(s)	308, 485
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	3 cut(s)	154, 230, 521
HhaI	GCGC	2 cut(s)	309, 486
Hin1II	CATG	6 cut(s)	94, 401, 428, 467, 496, 530
Hin6I	GCGC	2 cut(s)	307, 484
HinP1I	GCGC	2 cut(s)	307, 484
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	3 cut(s)	154, 230, 521
HphI	GGTGA	2 cut(s)	128, 560
Hpy166II	GTNNAC	3 cut(s)	53, 65, 535
Hpy188I	TCNGA	2 cut(s)	218, 372
Hpy188III	TCNNGA	4 cut(s)	106, 154, 392, 476
Hpy8I	GTNNAC	3 cut(s)	53, 65, 535
HpyAV	CCTTC	1 cut(s)	93
HpyCH4V	TGCA	4 cut(s)	30, 94, 185, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 306
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	6 cut(s)	94, 401, 428, 467, 496, 530
HspAI	GCGC	2 cut(s)	307, 484
Kpn2I	TCCGGA	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	5 cut(s)	156, 156, 265, 292, 300
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	414
MbiI	CCGCTC	1 cut(s)	42
MboI	GATC	1 cut(s)	412
MboII	GAAGA	4 cut(s)	154, 283, 296, 452
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	34, 177, 274, 280, 283, 329, 450, 544, 547
MroI	TCCGGA	1 cut(s)	153
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	3 cut(s)	154, 230, 521
MspR9I	CCNGG	2 cut(s)	230, 450
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	177, 306
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	6 cut(s)	94, 401, 428, 467, 496, 530
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	134
NsbI	TGCGCA	1 cut(s)	308
NspI	RCATGY	2 cut(s)	94, 496
PciI	ACATGT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PscI	ACATGT	1 cut(s)	492
PsiI	TTATAA	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	70
RsaI	GTAC	5 cut(s)	11, 54, 77, 315, 435
RsaNI	GTAC	5 cut(s)	10, 53, 76, 314, 434
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	435
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	230, 450
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	8 cut(s)	20, 123, 141, 161, 211, 270, 297, 340
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	7 cut(s)	40, 115, 203, 278, 298, 301, 333
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	228, 448
TasI	AATT	1 cut(s)	101
TatI	WGTACW	2 cut(s)	313, 433
TauI	GCSGC	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	2 cut(s)	72, 187
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	4 cut(s)	17, 203, 452, 525
TspRI	CASTG	2 cut(s)	72, 187
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	2 cut(s)	94, 496
ZrmI	AGTACT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.