Rh6DG501800

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008843
Physical Location & Seq
Forward (+)
65748948 .. 65750362
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG501800.1

Sequence Viewer

Length: 813 bp
ATGACATGGATTTTTTCTTCAAAAGAACACAACAGAATCAAATGCGACCCAGATTGTTGGCTGGCCCCGTACTTCCCTGCCCATGTGCACCAGAAATACAAGAAAGCCCAGCAGGTGTTCGGCAAAAGTTACATGACCAAGTTGCTCAAGAGCCTCCACCAGACCCCTCACAAAAGAAGCACTGCCATGAAGAACATCAGAGCCGAAGCCGATATCCGCAGCGCCGACCCGGTCGGCGGTTGTTATGGTGTTGTGAAGGAGCAATGTGCTGTTATAAGGAGACTGGAGAGGGAGATTGCAGAGCAAGAGGAGGAGCTCCGCCGCTTGCGCAGTCAACTTGGTGGTGGTGGAGGAGGAGGGTCTGTTAATGTGGCTATGGCACAACCACCTTTGGCCACCGCCATATATCAAGAACAGGGCTACAACACTTTTCAGCAGAATCTTGAAGAACAGAATTACAATGCAAGTCAAGGATATGATCAAGAACAGGGCAACTTTGCTCAAGGATTTCCTCATGTTCATCAAGAAGAGGGCAACATTGTTCAAGGATATCGAATTCGACAAGAACAGACTAACATTGATGCTCAGAGTCAAGGATATGTTCAGGCACCCACTCATCATCAACAGCTTCTTCCAGAGCCTAATCAAGAACAGGGCGCATTTTTGATTTCAGGGATGAAGTTGTTGTACTTGTGCCAGAACATGATGGTCTCGAGCCTCAACCCTCGACCCAATTCAGGTGAGCACAAGTGCAGTGACATAATAGGCAGGCTTCACAGTTCATATCAATTTGCAAATGGTAAAAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

270

Amino Acids

30.55

Weight (kDa)

8.46

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 10 - 102 5.1e-21 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
AarI CACCTGC 1 cut(s) 103
Acc16I TGCGCA 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 103
AccB1I GGYRCC 1 cut(s) 607
AciI CCGC 5 cut(s) 217, 237, 319, 322, 399
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 555
AfaI GTAC 2 cut(s) 71, 689
AfiI CCNNNNNNNGG 2 cut(s) 236, 737
AgsI TTSAA 3 cut(s) 21, 446, 545
AluBI AGCT 2 cut(s) 316, 628
AluI AGCT 2 cut(s) 316, 628
Alw21I GWGCWC 3 cut(s) 90, 318, 747
Alw26I GTCTC 2 cut(s) 274, 715
Alw44I GTGCAC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 712
AoxI GGCC 2 cut(s) 63, 393
ApaLI GTGCAC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 555
AspLEI GCGC 3 cut(s) 224, 330, 659
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 752
AvaI CYCGRG 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 90
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 671, 703
Bbv12I GWGCWC 3 cut(s) 90, 318, 747
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 700
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 274, 715
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 2 cut(s) 220, 322
BlsI GCNGC 2 cut(s) 221, 323
Bme1390I CCNGG 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 66, 609
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 571
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 131, 486
BpuMI CCSGG 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 715
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 737
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 269
BseGI GGATG 1 cut(s) 681
BseLI CCNNNNNNNGG 2 cut(s) 236, 737
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 4 cut(s) 323, 326, 366, 369
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 108
BsgI GTGCAG 1 cut(s) 772
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 2 cut(s) 65, 395
BshNI GGYRCC 1 cut(s) 607
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 3 cut(s) 90, 318, 747
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 236, 737
BsmAI GTCTC 2 cut(s) 274, 715
BsnI GGCC 2 cut(s) 65, 395
Bso31I GGTCTC 1 cut(s) 715
BsoBI CYCGRG 1 cut(s) 712
Bsp1286I GDGCHC 3 cut(s) 90, 318, 747
Bsp143I GATC 1 cut(s) 478
BspACI CCGC 5 cut(s) 217, 237, 319, 322, 399
BspANI GGCC 2 cut(s) 65, 395
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 66, 609
BspMI ACCTGC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 607
BspTNI GGTCTC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 288
BssMI GATC 1 cut(s) 478
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 1 cut(s) 522
BstC8I GCNNGC 3 cut(s) 63, 326, 770
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 681
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 3 cut(s) 224, 330, 659
BstKTI GATC 1 cut(s) 481
BstMAI GTCTC 2 cut(s) 274, 715
BstMBI GATC 1 cut(s) 478
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 65, 395
BtsCI GGATG 1 cut(s) 681
BtsI GCAGTG 2 cut(s) 180, 760
BtsIMutI CAGTG 2 cut(s) 180, 760
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 3 cut(s) 63, 326, 770
CfoI GCGC 3 cut(s) 224, 330, 659
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 70, 688
CviAII CATG 6 cut(s) 6, 83, 133, 187, 515, 703
CviQI GTAC 2 cut(s) 70, 688
DdeI CTNAG 1 cut(s) 585
DpnI GATC 1 cut(s) 480
DpnII GATC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
EciI GGCGGA 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 715
Eco32I GATATC 2 cut(s) 214, 551
Eco53kI GAGCTC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 712
EcoICRI GAGCTC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 555
EcoRV GATATC 2 cut(s) 214, 551
EcoT38I GRGCYC 1 cut(s) 318
FaeI CATG 6 cut(s) 9, 86, 136, 190, 518, 706
FatI CATG 6 cut(s) 5, 82, 132, 186, 514, 702
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 220, 322
FokI GGATG 1 cut(s) 688
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 220, 322
FspI TGCGCA 1 cut(s) 329
GlaI GCGC 3 cut(s) 223, 329, 658
GluI GCNGC 2 cut(s) 220, 322
GsaI CCCAGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 65, 395
HapII CCGG 1 cut(s) 230
HhaI GCGC 3 cut(s) 224, 330, 659
Hin1II CATG 6 cut(s) 9, 86, 136, 190, 518, 706
Hin6I GCGC 3 cut(s) 222, 328, 657
HinP1I GCGC 3 cut(s) 222, 328, 657
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HinfI GANTC 3 cut(s) 36, 439, 589
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 2 cut(s) 88, 335
Hpy188I TCNGA 2 cut(s) 200, 588
Hpy188III TCNNGA 8 cut(s) 148, 410, 443, 482, 524, 635, 647, 712
Hpy8I GTNNAC 2 cut(s) 88, 335
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4V TGCA 5 cut(s) 88, 299, 464, 753, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 1 cut(s) 585
Hsp92II CATG 6 cut(s) 9, 86, 136, 190, 518, 706
HspAI GCGC 3 cut(s) 222, 328, 657
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 1 cut(s) 478
LmnI GCTCC 3 cut(s) 259, 313, 321
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 571
MaeIII GTNAC 2 cut(s) 128, 755
MalI GATC 1 cut(s) 480
MboI GATC 1 cut(s) 478
MboII GAAGA 5 cut(s) 9, 202, 458, 539, 623
MhlI GDGCHC 3 cut(s) 90, 318, 747
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 4 cut(s) 454, 555, 733, 788
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 598
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 327
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 478
NlaIII CATG 6 cut(s) 9, 86, 136, 190, 518, 706
NlaIV GGNNCC 2 cut(s) 66, 609
NmuCI GTSAC 1 cut(s) 755
NsbI TGCGCA 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 712
PaqCI CACCTGC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 36, 439
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 221, 323
PleI GAGTC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 597
PsiI TTATAA 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 66, 609
PspPI GGNCC 1 cut(s) 64
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 2 cut(s) 71, 689
RsaNI GTAC 2 cut(s) 70, 688
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 220, 322
Sau3AI GATC 1 cut(s) 478
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 3 cut(s) 90, 318, 747
SetI ASST 5 cut(s) 117, 318, 391, 630, 742
SfaNI GCATC 1 cut(s) 571
Sfr274I CTCGAG 1 cut(s) 712
SlaI CTCGAG 1 cut(s) 712
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 3 cut(s) 146, 501, 712
SmoI CTYRAG 3 cut(s) 146, 501, 712
Sse9I AATT 4 cut(s) 454, 555, 733, 788
SsiI CCGC 5 cut(s) 217, 237, 319, 322, 399
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 779
TaqI TCGA 4 cut(s) 553, 559, 713, 727
TasI AATT 4 cut(s) 454, 555, 733, 788
TatI WGTACW 1 cut(s) 687
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 2 cut(s) 36, 439
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 187, 760
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 4 cut(s) 203, 509, 692, 771
TspRI CASTG 2 cut(s) 187, 760
Tth111I GACNNNGTC 1 cut(s) 230
VneI GTGCAC 1 cut(s) 86
XapI RAATTY 1 cut(s) 555
XhoI CTCGAG 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.