Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008843

Physical Location & Seq

Genomic Coordinates Reverse (-)

1648118 .. 1651663

Gene Structure 3546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGAAGAACCCCCAGACTTGTTCCTCTTGCAAACACAACAGAATCAAATGCGGCCCAGATTGTTGGCTGGCCCCGTACTTCCCTGCCCATGTGCACCAGAAATACAAGAAAGCCCAGCAGGTGTTCGGCAAAAGTTACATGACCAAGTTGCTCAAGAGCCTCCACCAGACCCCTCACAAAAGAAGCACTGCCATGAAGAACATCAGAGCCGAAGCCGATATCCGCAGCGCCGACCCGGTCGGCGGTTGTTATGGTGTTGTGAAGAAGCAATGTGCTGTTATAAGGAGACTGGAGAGGAAGATTGCAGAGCAAGAGGAGGAGCTCCACCGCTTGCGCAGTCAACTTGGTGGTGGTGGTGGAGGAGGAGGGTCTGTTAATGTGGCTATGGCACAACCACCTTTGGCCACCGCCATGTATCAAGAACAGGGCTACAACACTTTTCAGCAGAATCTTGAAGAACAGAATTACAATGCAAGTCAAGGATATGATCAAGAGCAGGGCAACTTTGCTCAAGGATTTCCTCATGTTCATCAAGAAGAGGGCAACATTGTTCAAGGATATCGAATTCGACAAGAACAGACTAACATTGATGCTCAGAGTCAAGGATATGTTCAGGCACCCACTCATCATCAACAGCTTCTTCCAGAGCCTAATCAAGAACAGGGCGACATTTTTTATTTCAGGGATGAAGTTGTTGTGCCAGAACATGATGGTCTCGACCCTCGACCCTCGACCCAATTCAGACACAACCGCTCAAAATGTGTACGGGATTGTCCACTGGCCCCGTACTTCCCTTCCCACATGCACCAAAAATTAAAGAATGCCCGCAAGGTGTTCGGCGAAAGTCACCTGAAGCAGTTGCTCCGGAGCCTACCCCCTCACAAAAGAAGCACTGCCATGAAGCACATTATAGCCGAAGCTGACATCCGAGTCGCCGACCCGGTTGGTGGGAGTTATGGACTTATAAGGAACTTGGAGCTGAAGATTGCGGAGGAAGAGGAGAAGCTCCGCCGCTTGCGCAATGTACTTGGTGTGTTTCATGGCGGAGGAAGTGGTAGTGTTGTGGCACAGCCTTTGGTTCAGAAACAGGGATACATTGTTCAAGAACGTGATAACATCAATTATCAGGGATATCATATTCCAGTACTCCCTATTGTTCCTGGTGGATTTCTTCATGCACTCCTTCATCAAGAACAGCGCAACAACATGACGAAGTTGTGCCGGAACATGATGTCAACCCAAATCAGGGTGAGGAGGAGTGAAAGCAGTGACATAAGGGGAAGGCGATCACAGTTCATATCACTTGCAAATGGTGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

441

Amino Acids

49.82

Weight (kDa)

9.41

Isoelectric Point (pI)

67.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 104	5.6e-24	Lateral organ boundaries (LOB) domain
LOB	PF03195	248 - 339	2.3e-23	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31770 FvH4_2g31780
malus_domestica	MD15G1058700.v1.1
prunus_persica	Prupe.1G411200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0311041 RchiOBHm_Chr6g0311051
rosa_laevigata	RLG00000010440
rosa_multiflora	Rmu_co8111360.1_g000001 Rmu_sc0012235.1_g000005 Rmu_sc0014619.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158070 Rroxscaffold_7G00158080
rosa_rugosa	Rorug06G0384900 Rorug06G0384900
rosa_samantha	Rh6AG498800 Rh6AG498900 Rh6BG509400 Rh6BG509500 Rh6CG515200 Rh6CG515300 Rh6DG501800
rosa_wichuraiana	Rw6G043440 Rw6G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	281, 965
AarI	CACCTGC	1 cut(s)	109
AasI	GACNNNNNNGTC	1 cut(s)	929
Acc16I	TGCGCA	2 cut(s)	335, 1019
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	616
AccBSI	CCGCTC	1 cut(s)	753
AccIII	TCCGGA	1 cut(s)	864
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	2 cut(s)	872, 1001
AfaI	GTAC	5 cut(s)	77, 765, 788, 1026, 1146
AfiI	CCNNNNNNNGG	4 cut(s)	242, 947, 1245, 1246
AgsI	TTSAA	3 cut(s)	455, 554, 1103
AjnI	CCWGG	1 cut(s)	1159
AloI	GAACNNNNNNTCC	2 cut(s)	1083, 1115
AluBI	AGCT	5 cut(s)	322, 637, 920, 979, 1006
AluI	AGCT	5 cut(s)	322, 637, 920, 979, 1006
Alw21I	GWGCWC	2 cut(s)	96, 324
Alw26I	GTCTC	2 cut(s)	280, 719
Alw44I	GTGCAC	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	864
AoxI	GGCC	4 cut(s)	52, 69, 402, 780
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	564
AspLEI	GCGC	4 cut(s)	230, 336, 1020, 1200
AspS9I	GGNCC	3 cut(s)	53, 70, 781
AsuC2I	CCSGG	2 cut(s)	236, 941
AsuHPI	GGTGA	2 cut(s)	839, 1261
BaeGI	GKGCMC	1 cut(s)	96
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	2 cut(s)	96, 324
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	1 cut(s)	704
BcgI	CGANNNNNNTGC	2 cut(s)	817, 851
BciT130I	CCWGG	1 cut(s)	1161
BciVI	GTATCC	1 cut(s)	1085
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	236, 941
BcoDI	GTCTC	2 cut(s)	280, 719
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	1085
BisI	GCNGC	3 cut(s)	52, 226, 1012
BlsI	GCNGC	3 cut(s)	53, 227, 1013
BmcAI	AGTACT	1 cut(s)	1146
Bme1390I	CCNGG	3 cut(s)	236, 941, 1161
BmgT120I	GGNCC	3 cut(s)	53, 70, 781
BmiI	GGNNCC	4 cut(s)	72, 618, 783, 869
BmrFI	CCNGG	3 cut(s)	236, 941, 1161
BmsI	GCATC	1 cut(s)	580
BpmI	CTGGAG	1 cut(s)	311
BpuEI	CTTGAG	2 cut(s)	137, 495
BpuMI	CCSGG	2 cut(s)	236, 941
BsaI	GGTCTC	1 cut(s)	719
BsaWI	WCCGGW	1 cut(s)	864
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 947, 1245, 1246
Bse1I	ACTGG	3 cut(s)	294, 783, 1142
Bse3DI	GCAATG	2 cut(s)	275, 1027
BseAI	TCCGGA	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	1161
BseGI	GGATG	2 cut(s)	691, 924
BseLI	CCNNNNNNNGG	4 cut(s)	242, 947, 1245, 1246
BseMI	GCAATG	2 cut(s)	275, 1027
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	3 cut(s)	294, 783, 1142
BseRI	GAGGAG	7 cut(s)	329, 332, 375, 378, 1013, 1267, 1270
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	237
BseYI	CCCAGC	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	4 cut(s)	54, 71, 404, 782
BshNI	GGYRCC	1 cut(s)	616
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	96, 324
BsiSI	CCGG	4 cut(s)	236, 865, 941, 1222
BslI	CCNNNNNNNGG	4 cut(s)	242, 947, 1245, 1246
BsmAI	GTCTC	2 cut(s)	280, 719
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	4 cut(s)	54, 71, 404, 782
Bso31I	GGTCTC	1 cut(s)	719
Bsp1286I	GDGCHC	2 cut(s)	96, 324
Bsp13I	TCCGGA	1 cut(s)	864
Bsp143I	GATC	2 cut(s)	487, 1286
BspANI	GGCC	4 cut(s)	54, 71, 404, 782
BspCNI	CTCAG	1 cut(s)	607
BspEI	TCCGGA	1 cut(s)	864
BspLI	GGNNCC	4 cut(s)	72, 618, 783, 869
BspMI	ACCTGC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	616
BspTNI	GGTCTC	1 cut(s)	719
BsrBI	CCGCTC	1 cut(s)	753
BsrDI	GCAATG	2 cut(s)	275, 1027
BsrI	ACTGG	3 cut(s)	294, 783, 1142
BssMI	GATC	2 cut(s)	487, 1286
Bst2UI	CCWGG	1 cut(s)	1161
Bst4CI	ACNGT	1 cut(s)	1293
Bst6I	CTCTTC	2 cut(s)	531, 990
BstC8I	GCNNGC	4 cut(s)	69, 332, 826, 1016
BstDEI	CTNAG	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	691, 924
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	4 cut(s)	230, 336, 1020, 1200
BstKTI	GATC	2 cut(s)	490, 1289
BstMAI	GTCTC	2 cut(s)	280, 719
BstMBI	GATC	2 cut(s)	487, 1286
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	1017
BstNI	CCWGG	1 cut(s)	1161
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	3 cut(s)	234, 939, 1159
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	1085
BsuRI	GGCC	4 cut(s)	54, 71, 404, 782
BtsCI	GGATG	2 cut(s)	691, 924
BtsI	GCAGTG	3 cut(s)	186, 891, 1273
BtsIMutI	CAGTG	4 cut(s)	186, 776, 891, 1273
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	4 cut(s)	69, 332, 826, 1016
CfoI	GCGC	4 cut(s)	230, 336, 1020, 1200
Cfr13I	GGNCC	3 cut(s)	53, 70, 781
Csp6I	GTAC	5 cut(s)	76, 764, 787, 1025, 1145
CviQI	GTAC	5 cut(s)	76, 764, 787, 1025, 1145
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	2 cut(s)	489, 1288
DpnII	GATC	2 cut(s)	487, 1286
DrdI	GACNNNNNNGTC	1 cut(s)	929
DseDI	GACNNNNNNGTC	1 cut(s)	929
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	531, 990
EarI	CTCTTC	2 cut(s)	531, 990
EciI	GGCGGA	2 cut(s)	998, 1059
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	719
Eco32I	GATATC	3 cut(s)	220, 560, 1133
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	872, 1001
EcoICRI	GAGCTC	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	564
EcoRII	CCWGG	1 cut(s)	1159
EcoRV	GATATC	3 cut(s)	220, 560, 1133
EcoT38I	GRGCYC	1 cut(s)	324
FauI	CCCGC	1 cut(s)	833
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	52, 226, 1012
FokI	GGATG	2 cut(s)	698, 911
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	52, 226, 1012
FspI	TGCGCA	2 cut(s)	335, 1019
GlaI	GCGC	4 cut(s)	229, 335, 1019, 1199
GluI	GCNGC	3 cut(s)	52, 226, 1012
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	311
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	4 cut(s)	54, 71, 404, 782
HapII	CCGG	4 cut(s)	236, 865, 941, 1222
HhaI	GCGC	4 cut(s)	230, 336, 1020, 1200
Hin6I	GCGC	4 cut(s)	228, 334, 1018, 1198
HinP1I	GCGC	4 cut(s)	228, 334, 1018, 1198
HincII	GTYRAC	2 cut(s)	341, 1236
HindII	GTYRAC	2 cut(s)	341, 1236
HinfI	GANTC	4 cut(s)	42, 448, 598, 930
HpaII	CCGG	4 cut(s)	236, 865, 941, 1222
HphI	GGTGA	2 cut(s)	839, 1261
Hpy166II	GTNNAC	5 cut(s)	94, 341, 764, 776, 1236
Hpy188I	TCNGA	5 cut(s)	206, 597, 743, 929, 1083
Hpy8I	GTNNAC	5 cut(s)	94, 341, 764, 776, 1236
HpyAV	CCTTC	3 cut(s)	804, 1193, 1275
HpyCH4III	ACNGT	1 cut(s)	1293
HpyCH4IV	ACGT	1 cut(s)	1108
HpyCH4V	TGCA	7 cut(s)	30, 94, 305, 473, 805, 1178, 1307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1017
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	1 cut(s)	1108
HspAI	GCGC	4 cut(s)	228, 334, 1018, 1198
Kpn2I	TCCGGA	1 cut(s)	864
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	487, 1286
LmnI	GCTCC	6 cut(s)	319, 327, 867, 867, 976, 1011
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	580
MaeII	ACGT	1 cut(s)	1108
MaeIII	GTNAC	3 cut(s)	134, 845, 1268
MalI	GATC	2 cut(s)	489, 1288
MbiI	CCGCTC	1 cut(s)	753
MboI	GATC	2 cut(s)	487, 1286
MhlI	GDGCHC	2 cut(s)	96, 324
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	5 cut(s)	463, 564, 737, 812, 1120
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	2 cut(s)	607, 939
Mox20I	TGGCCA	1 cut(s)	404
MroI	TCCGGA	1 cut(s)	864
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	2 cut(s)	375, 815
MslI	CAYNNNNRTG	3 cut(s)	191, 410, 896
Msp20I	TGGCCA	1 cut(s)	404
MspI	CCGG	4 cut(s)	236, 865, 941, 1222
MspR9I	CCNGG	3 cut(s)	236, 941, 1161
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	1 cut(s)	1161
MwoI	GCNNNNNNNGC	1 cut(s)	1017
NciI	CCSGG	2 cut(s)	236, 941
NdeII	GATC	2 cut(s)	487, 1286
NlaIV	GGNNCC	4 cut(s)	72, 618, 783, 869
NmuCI	GTSAC	2 cut(s)	845, 1268
NsbI	TGCGCA	2 cut(s)	335, 1019
NspI	RCATGY	1 cut(s)	805
PaqCI	CACCTGC	1 cut(s)	109
PctI	GAATGC	1 cut(s)	826
PfeI	GAWTC	2 cut(s)	42, 448
PflFI	GACNNNGTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	53, 227, 1013
PleI	GAGTC	2 cut(s)	606, 938
PpsI	GAGTC	2 cut(s)	606, 938
PsiI	TTATAA	2 cut(s)	281, 965
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	1159
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	1159
PspN4I	GGNNCC	4 cut(s)	72, 618, 783, 869
PspPI	GGNCC	3 cut(s)	53, 70, 781
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	5 cut(s)	77, 765, 788, 1026, 1146
RsaNI	GTAC	5 cut(s)	76, 764, 787, 1025, 1145
RseI	CAYNNNNRTG	3 cut(s)	191, 410, 896
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	375, 815
SatI	GCNGC	3 cut(s)	52, 226, 1012
Sau3AI	GATC	2 cut(s)	487, 1286
Sau96I	GGNCC	3 cut(s)	53, 70, 781
ScaI	AGTACT	1 cut(s)	1146
SchI	GAGTC	2 cut(s)	607, 939
ScrFI	CCNGG	3 cut(s)	236, 941, 1161
SduI	GDGCHC	2 cut(s)	96, 324
SfaNI	GCATC	1 cut(s)	580
SmiMI	CAYNNNNRTG	3 cut(s)	191, 410, 896
SmlI	CTYRAG	2 cut(s)	152, 510
SmoI	CTYRAG	2 cut(s)	152, 510
Sse9I	AATT	5 cut(s)	463, 564, 737, 812, 1120
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	234, 939, 1159
TaaI	ACNGT	1 cut(s)	1293
TaiI	ACGT	1 cut(s)	1111
TaqI	TCGA	5 cut(s)	562, 568, 717, 724, 731
TasI	AATT	5 cut(s)	463, 564, 737, 812, 1120
TatI	WGTACW	2 cut(s)	1024, 1144
TauI	GCSGC	2 cut(s)	54, 1014
TfiI	GAWTC	2 cut(s)	42, 448
Tru1I	TTAA	2 cut(s)	375, 815
Tru9I	TTAA	2 cut(s)	375, 815
TscAI	CASTG	4 cut(s)	193, 783, 898, 1273
TseFI	GTSAC	2 cut(s)	845, 1268
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	2 cut(s)	845, 1268
TspDTI	ATGAA	9 cut(s)	17, 209, 518, 702, 914, 1028, 1163, 1175, 1285
TspRI	CASTG	4 cut(s)	193, 783, 898, 1273
Tth111I	GACNNNGTC	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	1 cut(s)	805
ZrmI	AGTACT	1 cut(s)	1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.