Rw6G043440

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008843
Physical Location & Seq
Forward (+)
66767252 .. 66767923
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043440.1

Sequence Viewer

Length: 672 bp
ATGAAGAACCCCCAGACTTGTTCCTCTTGCAGACACAACAGAATCAAATGCGACCCAGATTGTTGGCTGGCCCCGTACTTCCCTGCCCATATGCACCAGAAATACAAGAAAGCCCAGCAGGTGTTCGGCAAAATTTACATGACCAAGTTGCTCAAGAGCCTCCACCAGACCCCTAACAAAAGAAGCACTGCCATGAAGAACATCAGAGCCGAAGCCGATATCCGCAGCGCCGACCCGGTCGGCGGTTGTTATGGTGTTGTGAAGGAACAATGTGCTGTTATAAGGAGGCTGGAGAGGGAGATTGCAGGGCAAGAGGAGGAGCTCCGCCGCTTGCGCAGTCAACTTGGTGGTGGAGGAGGAGGAGGGTCTGTTAATGTGGCTATGGAACAACCGCCTTTGGCCACCGCCATGTATCAAGAACAGAGCTACAACACTTTTCAGCAGAATCTTGAAGAACAGAATTACAATGCAAGTCAAGGATATGATCAAGAGCAGGGCAACTTTGCTCAAGGATTTCCGCATGTTCATCCAGAAGAGGGCAACATTGTTCAAGGATATCGAATTCGACAAGAACAGACTGACATTGATGCTCAGAGTCGAGGACATGTTCCGGCACCCACTCATCTTCCAGAGCCTAATCAAGAACAGGGCGACATTTTTTATTTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

223

Amino Acids

25.31

Weight (kDa)

7.66

Isoelectric Point (pI)

77.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 102 7.4e-24 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AarI CACCTGC 1 cut(s) 109
Acc16I TGCGCA 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 613
AciI CCGC 7 cut(s) 223, 243, 325, 328, 392, 405, 518
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 2 cut(s) 132, 561
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 242, 536
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 2 cut(s) 452, 551
AluBI AGCT 2 cut(s) 322, 426
AluI AGCT 2 cut(s) 322, 426
Alw21I GWGCWC 1 cut(s) 324
AoxI GGCC 2 cut(s) 69, 399
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 2 cut(s) 132, 561
AspLEI GCGC 2 cut(s) 230, 336
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 236
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 237
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 2 cut(s) 226, 328
BlsI GCNGC 2 cut(s) 227, 329
Bme1390I CCNGG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 72, 615
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 577
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 137, 492
BpuMI CCSGG 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 536
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 2 cut(s) 242, 536
BseMII CTCAG 1 cut(s) 605
BseRI GAGGAG 5 cut(s) 329, 332, 369, 372, 375
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 71, 401
BshNI GGYRCC 1 cut(s) 613
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 2 cut(s) 236, 611
BslI CCNNNNNNNGG 2 cut(s) 242, 536
BsnI GGCC 2 cut(s) 71, 401
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 484
BspACI CCGC 7 cut(s) 223, 243, 325, 328, 392, 405, 518
BspANI GGCC 2 cut(s) 71, 401
BspCNI CTCAG 1 cut(s) 604
BspLI GGNNCC 2 cut(s) 72, 615
BspMI ACCTGC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 613
BssMI GATC 1 cut(s) 484
Bst6I CTCTTC 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 69, 332
BstDEI CTNAG 1 cut(s) 591
BstF5I GGATG 1 cut(s) 526
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 230, 336
BstKTI GATC 1 cut(s) 487
BstMBI GATC 1 cut(s) 484
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstNSI RCATGY 2 cut(s) 524, 608
BstSCI CCNGG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 63
BsuRI GGCC 2 cut(s) 71, 401
BtsCI GGATG 1 cut(s) 526
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 69, 332
CfoI GCGC 2 cut(s) 230, 336
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 76
CviAII CATG 5 cut(s) 139, 193, 409, 521, 605
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 591
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
EciI GGCGGA 1 cut(s) 314
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco32I GATATC 2 cut(s) 220, 557
Eco53kI GAGCTC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 561
EcoRV GATATC 2 cut(s) 220, 557
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 5 cut(s) 142, 196, 412, 524, 608
FatI CATG 5 cut(s) 138, 192, 408, 520, 604
FauNDI CATATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 2 cut(s) 226, 328
FokI GGATG 1 cut(s) 513
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 226, 328
FspI TGCGCA 1 cut(s) 335
GlaI GCGC 2 cut(s) 229, 335
GluI GCNGC 2 cut(s) 226, 328
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 2 cut(s) 71, 401
HapII CCGG 2 cut(s) 236, 611
HhaI GCGC 2 cut(s) 230, 336
Hin1II CATG 5 cut(s) 142, 196, 412, 524, 608
Hin6I GCGC 2 cut(s) 228, 334
HinP1I GCGC 2 cut(s) 228, 334
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HinfI GANTC 3 cut(s) 42, 445, 595
HpaII CCGG 2 cut(s) 236, 611
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 206, 594
Hpy188III TCNNGA 7 cut(s) 154, 416, 449, 488, 530, 629, 641
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 30, 94, 305, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 591
Hsp92II CATG 5 cut(s) 142, 196, 412, 524, 608
HspAI GCGC 2 cut(s) 228, 334
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 2 cut(s) 319, 327
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 577
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 5 cut(s) 16, 208, 464, 545, 617
MhlI GDGCHC 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 3 cut(s) 132, 460, 561
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 604
Mox20I TGGCCA 1 cut(s) 401
MscI TGGCCA 1 cut(s) 401
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 2 cut(s) 191, 407
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 2 cut(s) 236, 611
MspR9I CCNGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 333
NciI CCSGG 1 cut(s) 236
NdeI CATATG 1 cut(s) 90
NdeII GATC 1 cut(s) 484
NlaIII CATG 5 cut(s) 142, 196, 412, 524, 608
NlaIV GGNNCC 2 cut(s) 72, 615
NsbI TGCGCA 1 cut(s) 335
NspI RCATGY 2 cut(s) 524, 608
PaqCI CACCTGC 1 cut(s) 109
PciI ACATGT 1 cut(s) 604
PfeI GAWTC 2 cut(s) 42, 445
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 227, 329
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
PscI ACATGT 1 cut(s) 604
PsiI TTATAA 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 72, 615
PspPI GGNCC 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 2 cut(s) 191, 407
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 226, 328
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 324
SetI ASST 4 cut(s) 123, 324, 428, 671
SfaNI GCATC 1 cut(s) 577
SmiMI CAYNNNNRTG 2 cut(s) 191, 407
SmlI CTYRAG 2 cut(s) 152, 507
SmoI CTYRAG 2 cut(s) 152, 507
Sse9I AATT 3 cut(s) 132, 460, 561
SsiI CCGC 7 cut(s) 223, 243, 325, 328, 392, 405, 518
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 234
TaqI TCGA 3 cut(s) 559, 565, 598
TasI AATT 3 cut(s) 132, 460, 561
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 2 cut(s) 42, 445
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 3 cut(s) 17, 209, 515
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 236
XapI RAATTY 2 cut(s) 132, 561
XceI RCATGY 2 cut(s) 524, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.