Rroxscaffold_7G00158080

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008843
Physical Location & Seq
Reverse (-)
1655535 .. 1659637
4103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158080.1

Sequence Viewer

Length: 813 bp
ATGAAGAAGCCCCAGACTTGTTCTTCTTGCAGACACAACAGAATCAAATGCGACCCAGATTGTTGGCTGGCCCCGTACTTCCCTGCCCATATGCACCAGAAATACAAGAAAGCCCAGCAGGTGTTCGGCAAAATTTACATGACCAAGTTGCTCAAGAGCCTCCACCAGACCCCTAACAAAAGAAGCACTGCCATGAAGAACATCAGAGGCGAAGCCGATATCCGCAGCGCCGACCCGGTTGGCGGTTGTTATGGTGTTGTGAAGGAGCAATGTGCTGTTATAAGGAGACTGGAGAGGAAGATTGCAGAGCAAGAGGAGGAGCTCCTCCGCTTGCGCAGTCAACTTGGTGGTGGAGGAGGAGGAGGGTCTGTTAATGTGGCTATGGCACAACCACCTTTGGCCACCGCCATGTATCAAGAACAGGGCTACAACACCTTTCAGCAGAATCTTGAAGAACAAAATTACAATGCAAGTCAAAGATATGATCAAGAACAGGGCAACTTTGCTCTAGGATTTCCTCATGTTCATCAAGAAGAGGGCAACATTGTTCAAGGATATCGAATTCGACAAGAACAGACTAACATTGATGCTCAGAGTCAAGGATATGTTCAGGCACCCACTCATCATCAACAGCTTCTTGCAGAGCCTAATCAAGAACAGGGCGACATTTTTTATTGCAGTGATGAAGTTGTTGTACTTGTGCCAGAACATGATGGTCTCGAGCCTCGACCCAATTCAGGTGAGCACAAGTGCAGTGACATAATAGGCAGGCTTCACAGTTCCAATCAATTTGCAAATGGTAAAAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

270

Amino Acids

30.49

Weight (kDa)

7.63

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 104 3e-23 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AarI CACCTGC 1 cut(s) 109
Acc16I TGCGCA 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 613
AciI CCGC 4 cut(s) 223, 243, 328, 405
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 2 cut(s) 132, 561
AfaI GTAC 2 cut(s) 77, 696
AfiI CCNNNNNNNGG 2 cut(s) 242, 737
AgsI TTSAA 2 cut(s) 452, 551
AluBI AGCT 2 cut(s) 322, 634
AluI AGCT 2 cut(s) 322, 634
Alw21I GWGCWC 2 cut(s) 324, 747
Alw26I GTCTC 2 cut(s) 280, 722
Ama87I CYCGRG 1 cut(s) 719
AoxI GGCC 2 cut(s) 69, 399
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 2 cut(s) 132, 561
AspLEI GCGC 2 cut(s) 230, 336
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 752
AvaI CYCGRG 1 cut(s) 719
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 324
BarI GAAGNNNNNNTAC 2 cut(s) 678, 710
Bbv12I GWGCWC 2 cut(s) 324, 747
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 707
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 280, 722
BfaI CTAG 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 719
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 72, 615
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 577
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 722
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 737
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 275
BseLI CCNNNNNNNGG 2 cut(s) 242, 737
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 6 cut(s) 314, 329, 332, 369, 372, 375
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 772
BshFI GGCC 2 cut(s) 71, 401
BshNI GGYRCC 1 cut(s) 613
BsiHKAI GWGCWC 2 cut(s) 324, 747
BsiHKCI CYCGRG 1 cut(s) 719
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 242, 737
BsmAI GTCTC 2 cut(s) 280, 722
BsnI GGCC 2 cut(s) 71, 401
Bso31I GGTCTC 1 cut(s) 722
BsoBI CYCGRG 1 cut(s) 719
Bsp1286I GDGCHC 2 cut(s) 324, 747
Bsp143I GATC 1 cut(s) 484
BspACI CCGC 4 cut(s) 223, 243, 328, 405
BspANI GGCC 2 cut(s) 71, 401
BspCNI CTCAG 1 cut(s) 604
BspLI GGNNCC 2 cut(s) 72, 615
BspMI ACCTGC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 613
BspTNI GGTCTC 1 cut(s) 722
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 294
BssMI GATC 1 cut(s) 484
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 1 cut(s) 528
BstC8I GCNNGC 3 cut(s) 69, 332, 770
BstDEI CTNAG 1 cut(s) 591
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 230, 336
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 2 cut(s) 280, 722
BstMBI GATC 1 cut(s) 484
BstSCI CCNGG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 63
BsuRI GGCC 2 cut(s) 71, 401
BtsI GCAGTG 3 cut(s) 186, 685, 760
BtsIMutI CAGTG 3 cut(s) 186, 685, 760
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 3 cut(s) 69, 332, 770
CfoI GCGC 2 cut(s) 230, 336
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 76, 695
CviAII CATG 5 cut(s) 139, 193, 409, 521, 710
CviQI GTAC 2 cut(s) 76, 695
DdeI CTNAG 1 cut(s) 591
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 722
Eco32I GATATC 2 cut(s) 220, 557
Eco53kI GAGCTC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 719
EcoICRI GAGCTC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 561
EcoRV GATATC 2 cut(s) 220, 557
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 5 cut(s) 142, 196, 412, 524, 713
FatI CATG 5 cut(s) 138, 192, 408, 520, 709
FauNDI CATATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 509
FspI TGCGCA 1 cut(s) 335
GlaI GCGC 2 cut(s) 229, 335
GluI GCNGC 1 cut(s) 226
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 2 cut(s) 71, 401
HapII CCGG 1 cut(s) 236
HhaI GCGC 2 cut(s) 230, 336
Hin1II CATG 5 cut(s) 142, 196, 412, 524, 713
Hin6I GCGC 2 cut(s) 228, 334
HinP1I GCGC 2 cut(s) 228, 334
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HinfI GANTC 3 cut(s) 42, 445, 595
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 206, 594
Hpy188III TCNNGA 7 cut(s) 154, 416, 449, 488, 530, 653, 719
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4V TGCA 8 cut(s) 30, 94, 305, 470, 641, 678, 753, 794
HpyF3I CTNAG 1 cut(s) 591
Hsp92II CATG 5 cut(s) 142, 196, 412, 524, 713
HspAI GCGC 2 cut(s) 228, 334
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 3 cut(s) 265, 319, 327
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 577
MaeI CTAG 1 cut(s) 509
MaeIII GTNAC 1 cut(s) 755
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MboII GAAGA 6 cut(s) 15, 16, 208, 310, 464, 545
MhlI GDGCHC 2 cut(s) 324, 747
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 5 cut(s) 132, 460, 561, 733, 788
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 604
Mox20I TGGCCA 1 cut(s) 401
MscI TGGCCA 1 cut(s) 401
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 2 cut(s) 191, 407
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 236
NciI CCSGG 1 cut(s) 236
NdeI CATATG 1 cut(s) 90
NdeII GATC 1 cut(s) 484
NlaIII CATG 5 cut(s) 142, 196, 412, 524, 713
NlaIV GGNNCC 2 cut(s) 72, 615
NmuCI GTSAC 1 cut(s) 755
NsbI TGCGCA 1 cut(s) 335
PaeR7I CTCGAG 1 cut(s) 719
PaqCI CACCTGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 42, 445
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
PsiI TTATAA 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 72, 615
PspPI GGNCC 1 cut(s) 70
RsaI GTAC 2 cut(s) 77, 696
RsaNI GTAC 2 cut(s) 76, 695
RseI CAYNNNNRTG 2 cut(s) 191, 407
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 2 cut(s) 324, 747
SetI ASST 6 cut(s) 123, 324, 397, 437, 636, 742
SfaNI GCATC 1 cut(s) 577
Sfr274I CTCGAG 1 cut(s) 719
SlaI CTCGAG 1 cut(s) 719
SmiMI CAYNNNNRTG 2 cut(s) 191, 407
SmlI CTYRAG 2 cut(s) 152, 719
SmoI CTYRAG 2 cut(s) 152, 719
Sse9I AATT 5 cut(s) 132, 460, 561, 733, 788
SsiI CCGC 4 cut(s) 223, 243, 328, 405
SspMI CTAG 1 cut(s) 509
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 779
TaqI TCGA 4 cut(s) 559, 565, 720, 727
TasI AATT 5 cut(s) 132, 460, 561, 733, 788
TatI WGTACW 1 cut(s) 694
TfiI GAWTC 2 cut(s) 42, 445
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 3 cut(s) 193, 685, 760
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 4 cut(s) 17, 209, 515, 699
TspRI CASTG 3 cut(s) 193, 685, 760
XapI RAATTY 2 cut(s) 132, 561
XhoI CTCGAG 1 cut(s) 719
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.