RchiOBHm_Chr6g0311041

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008843
Physical Location & Seq
Forward (+)
68154798 .. 68156514
1717 bp
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UTR
Exon/CDS
Intron
PRQ27971

Sequence Viewer

Length: 669 bp
ATGACATGGATTTTTTCTTCAAAAGAACACAACAGAATCAAATGCGACCCAGATTGTTGGCTGGCCCCGTACTTCCCTGCCCATATGCACCAGAAATACAAGAAAGCCCAGCAGGTGTTCGGCAAAATTTACATGACCAAGTTGCTCAAGAGCCTCCACAAGACCCCTAACAAAAGAAGCACTGCCATGAAGAACATCAGAGCCGAAGCCGATATCCGCAGCGCCGACCCGGTCGGCGGTTGTTATGGTGTTGTGAAGGAGCAATGTGCTGTTATAAGGAGACTGGAGAGGGAGATTGCAGGGCAAGAGGAGGAGCTCCGCCGCTTGCGCAGTCAACTTGGTGGTGGAGGAGGAGGAGGGTCTGTTAATGTGGCTATGGCACAACCACCTTTGGCCACCGCCATGTATCAAGAACAGAGCTACAACACTTTTCAGCAGAATCTTGAAGAACAGAATTACAATGCAAGTCAAGGATATGATCAAGAACAGGGCAACTTTGCTCAAGGATTTCCGCATGTTCATCCAGAAGAGGGCAACATTGTTCAAGGATATCGAATTCGACAAGAACAGACTGACATTGATGCTCAGAGTCAAGGATATGTTCAGGCACCCACTCATCTTCCAGAGACTAATCAAGAACAGGGCGACATTTTTTTATTTCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

222

Amino Acids

25.14

Weight (kDa)

6.66

Isoelectric Point (pI)

69.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 10 - 100 3.4e-20 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 275
AarI CACCTGC 1 cut(s) 103
Acc16I TGCGCA 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 103
AccB1I GGYRCC 1 cut(s) 607
AciI CCGC 6 cut(s) 217, 237, 319, 322, 399, 512
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 2 cut(s) 126, 555
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 236, 530
AgsI TTSAA 3 cut(s) 21, 446, 545
AluBI AGCT 2 cut(s) 316, 420
AluI AGCT 2 cut(s) 316, 420
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 2 cut(s) 274, 620
AoxI GGCC 2 cut(s) 63, 393
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 2 cut(s) 126, 555
AspLEI GCGC 2 cut(s) 224, 330
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 230
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 231
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 274, 620
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 2 cut(s) 220, 322
BlsI GCNGC 2 cut(s) 221, 323
Bme1390I CCNGG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 66, 609
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 571
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 131, 486
BpuMI CCSGG 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 530
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 269
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 2 cut(s) 236, 530
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 5 cut(s) 323, 326, 363, 366, 369
BseXI GCAGC 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 2 cut(s) 65, 395
BshNI GGYRCC 1 cut(s) 607
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 236, 530
BsmAI GTCTC 2 cut(s) 274, 620
BsnI GGCC 2 cut(s) 65, 395
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 478
BspACI CCGC 6 cut(s) 217, 237, 319, 322, 399, 512
BspANI GGCC 2 cut(s) 65, 395
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 66, 609
BspMI ACCTGC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 288
BssMI GATC 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 63, 326
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 520
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 224, 330
BstKTI GATC 1 cut(s) 481
BstMAI GTCTC 2 cut(s) 274, 620
BstMBI GATC 1 cut(s) 478
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 65, 395
BtsCI GGATG 1 cut(s) 520
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 63, 326
CfoI GCGC 2 cut(s) 224, 330
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 70
CviAII CATG 5 cut(s) 6, 133, 187, 403, 515
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 585
DpnI GATC 1 cut(s) 480
DpnII GATC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
EciI GGCGGA 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 318
Eco32I GATATC 2 cut(s) 214, 551
Eco53kI GAGCTC 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 555
EcoRV GATATC 2 cut(s) 214, 551
EcoT38I GRGCYC 1 cut(s) 318
FaeI CATG 5 cut(s) 9, 136, 190, 406, 518
FatI CATG 5 cut(s) 5, 132, 186, 402, 514
FauNDI CATATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 220, 322
FokI GGATG 1 cut(s) 507
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 220, 322
FspI TGCGCA 1 cut(s) 329
GlaI GCGC 2 cut(s) 223, 329
GluI GCNGC 2 cut(s) 220, 322
GsaI CCCAGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 65, 395
HapII CCGG 1 cut(s) 230
HhaI GCGC 2 cut(s) 224, 330
Hin1II CATG 5 cut(s) 9, 136, 190, 406, 518
Hin6I GCGC 2 cut(s) 222, 328
HinP1I GCGC 2 cut(s) 222, 328
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HinfI GANTC 3 cut(s) 36, 439, 589
HpaII CCGG 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 2 cut(s) 200, 588
Hpy188III TCNNGA 7 cut(s) 148, 410, 443, 482, 524, 623, 635
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 250
HpyCH4V TGCA 3 cut(s) 88, 299, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 1 cut(s) 585
Hsp92II CATG 5 cut(s) 9, 136, 190, 406, 518
HspAI GCGC 2 cut(s) 222, 328
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 1 cut(s) 478
LmnI GCTCC 3 cut(s) 259, 313, 321
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 571
MalI GATC 1 cut(s) 480
MboI GATC 1 cut(s) 478
MboII GAAGA 5 cut(s) 9, 202, 458, 539, 611
MhlI GDGCHC 1 cut(s) 318
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 3 cut(s) 126, 454, 555
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 598
MnlI CCTC 9 cut(s) 164, 282, 301, 304, 341, 344, 347, 350, 523
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 2 cut(s) 185, 401
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 327
NciI CCSGG 1 cut(s) 230
NdeI CATATG 1 cut(s) 84
NdeII GATC 1 cut(s) 478
NlaIII CATG 5 cut(s) 9, 136, 190, 406, 518
NlaIV GGNNCC 2 cut(s) 66, 609
NsbI TGCGCA 1 cut(s) 329
NspI RCATGY 1 cut(s) 518
PaqCI CACCTGC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 36, 439
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 221, 323
PleI GAGTC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 597
PsiI TTATAA 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 66, 609
PspPI GGNCC 1 cut(s) 64
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 185, 401
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 220, 322
Sau3AI GATC 1 cut(s) 478
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 318
SetI ASST 4 cut(s) 117, 318, 391, 422
SfaNI GCATC 1 cut(s) 571
SmiMI CAYNNNNRTG 2 cut(s) 185, 401
SmlI CTYRAG 2 cut(s) 146, 501
SmoI CTYRAG 2 cut(s) 146, 501
Sse9I AATT 3 cut(s) 126, 454, 555
SsiI CCGC 6 cut(s) 217, 237, 319, 322, 399, 512
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 228
TaqI TCGA 2 cut(s) 553, 559
TasI AATT 3 cut(s) 126, 454, 555
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 2 cut(s) 36, 439
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 187
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 203, 509
TspRI CASTG 1 cut(s) 187
Tth111I GACNNNGTC 1 cut(s) 230
XapI RAATTY 2 cut(s) 126, 555
XceI RCATGY 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.