Rmu_sc0014619.1_g000001

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014619.1
OG0008843
Physical Location & Seq
Reverse (-)
2 .. 330
329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014619.1_g000001.1.cds

Sequence Viewer

Length: 329 bp
atgaagaacccccagacttgttcctcttgcagacacaacagaatcaaatgcgacccagattgttggctggccccgtacttccctgcccatatgcaccagaaatacaagaaagcccagcaggtgttcggcaaaatttacatgaccaagttgctcaagagcctccaccagacccctaacaaaagaagcactgccatcaagaacatcagagccgaagccgatatccgcagcgccgaccccgtcggcggttgttatggtgttgtgaaggagcaatgtgctgttataaggagactggagagggagattgcagggcaagaggaggagctccgccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

110

Amino Acids

12.72

Weight (kDa)

9.59

Isoelectric Point (pI)

73.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
AciI CCGC 3 cut(s) 223, 243, 325
AcsI RAATTY 1 cut(s) 132
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 242
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 280
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 132
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 280
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 114
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 280
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 324
BspACI CCGC 3 cut(s) 223, 243, 325
BspANI GGCC 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 69
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstMAI GTCTC 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 63
BsuRI GGCC 1 cut(s) 71
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 76
CviAII CATG 1 cut(s) 139
CviJI RGCY 7 cut(s) 67, 71, 113, 159, 209, 215, 322
CviKI_1 RGCY 7 cut(s) 67, 71, 113, 159, 209, 215, 322
CviQI GTAC 1 cut(s) 76
EciI GGCGGA 1 cut(s) 314
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 322
EcoRV GATATC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 1 cut(s) 142
FaiI YATR 5 cut(s) 90, 92, 140, 252, 281
FatI CATG 1 cut(s) 138
FauNDI CATATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 226
GlaI GCGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 226
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 1 cut(s) 71
HhaI GCGC 1 cut(s) 230
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HinfI GANTC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 2 cut(s) 154, 196
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 30, 94, 305
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 228
LmnI GCTCC 3 cut(s) 265, 319, 327
Lsp1109I GCAGC 1 cut(s) 237
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 1 cut(s) 132
MnlI CCTC 5 cut(s) 34, 170, 288, 307, 310
NdeI CATATG 1 cut(s) 90
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 72
PaqCI CACCTGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SacI GAGCTC 1 cut(s) 324
SatI GCNGC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 324
SetI ASST 2 cut(s) 123, 324
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 132
SsiI CCGC 3 cut(s) 223, 243, 325
SstI GAGCTC 1 cut(s) 324
TasI AATT 1 cut(s) 132
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 236
XapI RAATTY 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.