Rorug06G0384900

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008843
Physical Location & Seq
Reverse (-)
53051919 .. 53056123
4205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0384900.1

Sequence Viewer

Length: 1029 bp
ATGGAGAGCTTACCGACGACGACGACGTCGAAATCGGACAGACGATCGAGATCGAAGCCTATTCAAACTTCCAAGCCTTCCATCTTCTTGGCCTTCTTCTCCTGCGTCGCTTGGCTCTACGTCGCCGGCCGGTTGTGGCAAGATGCGGAGAACAGAACAGTCTTAGCTAATCTTCTTAAGAAAAACTTAGGCCAGAGACCGATGGTGCTTTCAGTTGAAGATAAGTTAGCAGTCCTTGGATGCAAGGACCTGGAGAGGAGGATTGTTGAAGCTGAGATGGACTTGACGTTGGCCAAGAGTCAAGGCTACCTCAAGAACAACTTGAAGCAAACCTCTGGTCCATTTCTTGCCGTTATTGGAGTTTTTACCGGATTTGGCAGCCGTTTGCAGCGGAATGGGTTTCGAGGGTCTTGGATGCCTAAAGTTGATGCTTTGAAAAAACTTGAAGAAAGAGGAGTAGTCATACGTTTTGTGATTGGTCGGAGTCCCAACAAAGGTGATAGCTTAGACCGCAATATTGATGAGGAAAGTCGCGCGACACAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAGTTGCCTAAGAAAGCAAAGTTCTTCTTCAGTACCGCAGTTCGAAATTGGGATGCTGAATTTTATGTAAAAGTTGATGACCATATCGATCTTGACCTTGAGGGGATAATCGGACTTCTTGAAAAACGTCGTGGTCAAGACAGTGCTTATATTGGTTGTATGAAGTCAGGAGATGTGATTGCTGAAGAGGGAAAGTCTTGGTATGAACCTGACTGGTGGAAGTTTGGCGATCAGAAATCGTACTTTCGACATGCCGGTACTTCACTCTTCATACTATCGAAGAACTTAGCTCAGTACATAAACGTTAACAGTGCATCTTTGAAGACTTATGCTCATGATGATGTATCAGTGGGTTCATGGATGATGGGTATCCAAGCGACTTATATTGATGACAACCGTCTTTGCTGTAGTAGCATTAGACAAGACAAGGTCTGTTCATTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

342

Amino Acids

38.68

Weight (kDa)

8.4

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4094 PF13334 24 - 101 1.5e-06 Domain of unknown function (DUF4094)
Galactosyl_T PF01762 130 - 324 1e-30 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AatII GACGTC 1 cut(s) 29
AccII CGCG 2 cut(s) 534, 536
AciI CCGC 4 cut(s) 146, 391, 511, 618
AclI AACGTT 1 cut(s) 885
AcoI YGGCCR 2 cut(s) 127, 291
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 2 cut(s) 595, 786
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 4 cut(s) 616, 824, 841, 878
AfiI CCNNNNNNNGG 1 cut(s) 494
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 9 cut(s) 65, 218, 269, 325, 436, 446, 560, 704, 904
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 6 cut(s) 9, 167, 272, 504, 872, 1025
AluI AGCT 6 cut(s) 9, 167, 272, 504, 872, 1025
Alw26I GTCTC 1 cut(s) 190
AoxI GGCC 4 cut(s) 90, 127, 190, 291
ApeKI GCWGC 2 cut(s) 378, 388
ApoI RAATTY 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 247, 338
AsuHPI GGTGA 1 cut(s) 509
AsuII TTCGAA 1 cut(s) 625
AvaII GGWCC 2 cut(s) 247, 338
BalI TGGCCA 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 911
BbvI GCAGC 2 cut(s) 390, 400
BccI CCATC 4 cut(s) 89, 196, 271, 940
BceAI ACGGC 2 cut(s) 335, 366
BciT130I CCWGG 1 cut(s) 251
BciVI GTATCC 1 cut(s) 962
BcoDI GTCTC 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 988
BfrI CTTAAG 1 cut(s) 176
BfuI GTATCC 1 cut(s) 962
BisI GCNGC 2 cut(s) 379, 389
BlsI GCNGC 2 cut(s) 380, 390
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 2 cut(s) 247, 338
BmgT120I GGNCC 2 cut(s) 247, 338
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 6 cut(s) 133, 230, 405, 418, 625, 905
BoxI GACNNNNGTC 1 cut(s) 978
BpiI GAAGAC 1 cut(s) 911
BpmI CTGGAG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 625
BpuEI CTTGAG 3 cut(s) 296, 561, 701
Bsa29I ATCGAT 1 cut(s) 669
BsaBI GATNNNNATC 2 cut(s) 49, 950
BsaHI GRCGYC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse118I RCCGGY 3 cut(s) 125, 129, 836
Bse1I ACTGG 1 cut(s) 800
Bse8I GATNNNNATC 2 cut(s) 49, 950
BseBI CCWGG 1 cut(s) 251
BseCI ATCGAT 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 4 cut(s) 245, 420, 640, 948
BseJI GATNNNNATC 2 cut(s) 49, 950
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMII CTCAG 2 cut(s) 264, 887
BseNI ACTGG 1 cut(s) 800
BseRI GAGGAG 3 cut(s) 271, 468, 584
BseX3I CGGCCG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 390, 400
Bsh1236I CGCG 2 cut(s) 534, 536
Bsh1285I CGRYCG 2 cut(s) 47, 130
BshFI GGCC 4 cut(s) 92, 129, 192, 293
BshVI ATCGAT 1 cut(s) 669
BsiEI CGRYCG 2 cut(s) 47, 130
BsiSI CCGG 4 cut(s) 126, 130, 369, 837
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 4 cut(s) 92, 129, 192, 293
Bso31I GGTCTC 1 cut(s) 190
Bsp119I TTCGAA 1 cut(s) 625
Bsp143I GATC 4 cut(s) 44, 50, 670, 811
BspACI CCGC 4 cut(s) 146, 391, 511, 618
BspANI GGCC 4 cut(s) 92, 129, 192, 293
BspCNI CTCAG 2 cut(s) 265, 886
BspDI ATCGAT 1 cut(s) 669
BspFNI CGCG 2 cut(s) 534, 536
BspHI TCATGA 2 cut(s) 565, 916
BspT104I TTCGAA 1 cut(s) 625
BspTI CTTAAG 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 190
BsrFI RCCGGY 3 cut(s) 125, 129, 836
BsrI ACTGG 1 cut(s) 800
BssAI RCCGGY 3 cut(s) 125, 129, 836
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 4 cut(s) 44, 50, 670, 811
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 4 cut(s) 160, 725, 893, 980
Bst6I CTCTTC 3 cut(s) 576, 762, 854
BstACI GRCGYC 1 cut(s) 26
BstAFI CTTAAG 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 7 cut(s) 163, 187, 273, 505, 591, 868, 873
BstF5I GGATG 4 cut(s) 245, 420, 640, 948
BstFNI CGCG 2 cut(s) 534, 536
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 4 cut(s) 47, 53, 673, 814
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 4 cut(s) 44, 50, 670, 811
BstMCI CGRYCG 2 cut(s) 47, 130
BstMWI GCNNNNNNNGC 2 cut(s) 510, 993
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 836
BstPAI GACNNNNGTC 1 cut(s) 978
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 988
BstUI CGCG 2 cut(s) 534, 536
BstV1I GCAGC 2 cut(s) 390, 400
BstV2I GAAGAC 1 cut(s) 911
BstXI CCANNNNNNTGG 1 cut(s) 88
BstZI CGGCCG 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 669
BsuI GTATCC 1 cut(s) 962
BsuRI GGCC 4 cut(s) 92, 129, 192, 293
BsuTUI ATCGAT 1 cut(s) 669
BtsCI GGATG 4 cut(s) 245, 420, 640, 948
BtsIMutI CAGTG 3 cut(s) 730, 898, 936
Cac8I GCNNGC 1 cut(s) 127
CciI TCATGA 2 cut(s) 565, 916
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 3 cut(s) 125, 129, 836
Cfr13I GGNCC 2 cut(s) 247, 338
ClaI ATCGAT 1 cut(s) 669
CseI GACGC 1 cut(s) 94
Csp6I GTAC 4 cut(s) 615, 823, 840, 877
CviAII CATG 4 cut(s) 566, 833, 917, 939
CviQI GTAC 4 cut(s) 615, 823, 840, 877
DdeI CTNAG 7 cut(s) 163, 187, 273, 505, 591, 868, 873
DpnI GATC 4 cut(s) 46, 52, 672, 813
DpnII GATC 4 cut(s) 44, 50, 670, 811
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 2 cut(s) 127, 291
EagI CGGCCG 1 cut(s) 127
Eam1104I CTCTTC 3 cut(s) 576, 762, 854
EarI CTCTTC 3 cut(s) 576, 762, 854
EclXI CGGCCG 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 2 cut(s) 247, 338
Eco52I CGGCCG 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 595, 786
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 569, 836, 920, 942
FalI AAGNNNNNCTT 6 cut(s) 170, 202, 305, 337, 593, 625
FaqI GGGAC 1 cut(s) 471
FatI CATG 4 cut(s) 565, 832, 916, 938
Fnu4HI GCNGC 2 cut(s) 379, 389
FokI GGATG 4 cut(s) 252, 427, 647, 955
Fsp4HI GCNGC 2 cut(s) 379, 389
GlaI GCGC 1 cut(s) 535
GluI GCNGC 2 cut(s) 379, 389
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 4 cut(s) 92, 129, 192, 293
HapII CCGG 4 cut(s) 126, 130, 369, 837
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 536
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 4 cut(s) 569, 836, 920, 942
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HinfI GANTC 3 cut(s) 298, 484, 553
HpaI GTTAAC 1 cut(s) 889
HpaII CCGG 4 cut(s) 126, 130, 369, 837
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 1 cut(s) 889
Hpy188I TCNGA 4 cut(s) 37, 483, 695, 816
Hpy8I GTNNAC 1 cut(s) 889
Hpy99I CGWCG 8 cut(s) 19, 22, 25, 28, 31, 110, 125, 714
HpyAV CCTTC 3 cut(s) 87, 103, 554
HpyCH4III ACNGT 4 cut(s) 160, 725, 893, 980
HpyCH4IV ACGT 6 cut(s) 26, 120, 287, 466, 709, 885
HpyCH4V TGCA 3 cut(s) 243, 388, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 510, 993
HpyF3I CTNAG 7 cut(s) 163, 187, 273, 505, 591, 868, 873
HpySE526I ACGT 6 cut(s) 26, 120, 287, 466, 709, 885
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 4 cut(s) 569, 836, 920, 942
HspAI GCGC 1 cut(s) 534
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
KspAI GTTAAC 1 cut(s) 889
Kzo9I GATC 4 cut(s) 44, 50, 670, 811
Lsp1109I GCAGC 2 cut(s) 390, 400
LweI GCATC 6 cut(s) 133, 230, 405, 418, 625, 905
MaeII ACGT 6 cut(s) 26, 120, 287, 466, 709, 885
MalI GATC 4 cut(s) 46, 52, 672, 813
MboI GATC 4 cut(s) 44, 50, 670, 811
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 2 cut(s) 628, 641
MluNI TGGCCA 1 cut(s) 293
MlyI GAGTC 2 cut(s) 307, 493
MmeI TCCRAC 1 cut(s) 461
Mox20I TGGCCA 1 cut(s) 293
MroNI GCCGGC 1 cut(s) 125
MscI TGGCCA 1 cut(s) 293
MseI TTAA 2 cut(s) 177, 888
MslI CAYNNNNRTG 1 cut(s) 921
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 391
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 4 cut(s) 126, 130, 369, 837
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 2 cut(s) 534, 536
MwoI GCNNNNNNNGC 2 cut(s) 510, 993
NaeI GCCGGC 1 cut(s) 127
NdeII GATC 4 cut(s) 44, 50, 670, 811
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 4 cut(s) 569, 836, 920, 942
NspI RCATGY 1 cut(s) 836
NspV TTCGAA 1 cut(s) 625
PagI TCATGA 2 cut(s) 565, 916
PcsI WCGNNNNNNNCGW 2 cut(s) 23, 26
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 553
PflFI GACNNNGTC 2 cut(s) 25, 1010
PkrI GCNGC 2 cut(s) 380, 390
Ple19I CGATCG 1 cut(s) 47
PleI GAGTC 2 cut(s) 306, 492
PpsI GAGTC 2 cut(s) 306, 492
PpuMI RGGWCCY 1 cut(s) 247
PshAI GACNNNNGTC 1 cut(s) 978
Psp1406I AACGTT 1 cut(s) 885
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspPI GGNCC 2 cut(s) 247, 338
PspPPI RGGWCCY 1 cut(s) 247
PsyI GACNNNGTC 2 cut(s) 25, 1010
PvuI CGATCG 1 cut(s) 47
RsaI GTAC 4 cut(s) 616, 824, 841, 878
RsaNI GTAC 4 cut(s) 615, 823, 840, 877
RseI CAYNNNNRTG 1 cut(s) 921
SaqAI TTAA 2 cut(s) 177, 888
SatI GCNGC 2 cut(s) 379, 389
Sau3AI GATC 4 cut(s) 44, 50, 670, 811
Sau96I GGNCC 2 cut(s) 247, 338
SchI GAGTC 2 cut(s) 307, 493
ScrFI CCNGG 1 cut(s) 251
SfaNI GCATC 6 cut(s) 133, 230, 405, 418, 625, 905
SfcI CTRYAG 1 cut(s) 988
SfuI TTCGAA 1 cut(s) 625
SinI GGWCC 2 cut(s) 247, 338
SmiMI CAYNNNNRTG 1 cut(s) 921
SmlI CTYRAG 4 cut(s) 176, 311, 576, 680
SmoI CTYRAG 4 cut(s) 176, 311, 576, 680
Sse9I AATT 2 cut(s) 628, 641
SsiI CCGC 4 cut(s) 146, 391, 511, 618
SspI AATATT 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 4 cut(s) 160, 725, 893, 980
TaiI ACGT 6 cut(s) 29, 123, 290, 469, 712, 888
TaqI TCGA 8 cut(s) 29, 47, 53, 403, 625, 669, 829, 860
TaqII GACCGA 1 cut(s) 214
TasI AATT 2 cut(s) 628, 641
TatI WGTACW 1 cut(s) 876
TfiI GAWTC 1 cut(s) 553
Tru1I TTAA 2 cut(s) 177, 888
Tru9I TTAA 2 cut(s) 177, 888
TscAI CASTG 3 cut(s) 730, 898, 936
TseI GCWGC 2 cut(s) 378, 388
TspDTI ATGAA 5 cut(s) 758, 801, 841, 927, 1008
TspRI CASTG 3 cut(s) 730, 898, 936
Tth111I GACNNNGTC 2 cut(s) 25, 1010
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 2 cut(s) 247, 338
XapI RAATTY 1 cut(s) 641
XceI RCATGY 1 cut(s) 836
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.