Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8111360.1

Orthogroup ID

OG0008843

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 423

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8111360.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

tatggtgttgtgaaggagcaatgtgctgttataaggagactggagagggagattgcagggcaagaggaggagctccgccgcttgcgcagtcaacttggtggtggaggaggaggagggtctgttaatgtggatatggaacaaccgcctttggccaccgccatgtatcaagaacagagctacaacacttttcagcagaatcttgaagaacagaattacaatgcaagtcaaggatatgatcaagagcagggcaactttgctcaaggatttccgcatgttcatccagaagagggcaacattgttcaaggatatcgaattcgacaagaacagactgacattgatgctcagagtcaaggatatgttcaggcacccactcatcttccagagcctaatcaagaacagggcgacattttttatttcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.88

Weight (kDa)

4.57

Isoelectric Point (pI)

80.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31770 FvH4_2g31780
malus_domestica	MD15G1058700.v1.1
prunus_persica	Prupe.1G411200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0311041 RchiOBHm_Chr6g0311051
rosa_laevigata	RLG00000010440
rosa_multiflora	Rmu_co8111360.1_g000001 Rmu_sc0012235.1_g000005 Rmu_sc0014619.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158070 Rroxscaffold_7G00158080
rosa_rugosa	Rorug06G0384900 Rorug06G0384900
rosa_samantha	Rh6AG498800 Rh6AG498900 Rh6BG509400 Rh6BG509500 Rh6CG515200 Rh6CG515300 Rh6DG501800
rosa_wichuraiana	Rw6G043440 Rw6G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
Acc16I	TGCGCA	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	364
AciI	CCGC	5 cut(s)	76, 79, 143, 156, 269
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	203, 302
AluBI	AGCT	2 cut(s)	73, 177
AluI	AGCT	2 cut(s)	73, 177
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	31
AoxI	GGCC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	366
BmsI	GCATC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	5 cut(s)	80, 83, 120, 123, 126
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	5 cut(s)	76, 79, 143, 156, 269
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	1 cut(s)	87
CviAII	CATG	2 cut(s)	160, 272
CviJI	RGCY	4 cut(s)	73, 152, 177, 385
CviKI_1	RGCY	4 cut(s)	73, 152, 177, 385
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	2 cut(s)	163, 275
FaiI	YATR	7 cut(s)	3, 32, 134, 161, 234, 273, 357
FatI	CATG	2 cut(s)	159, 271
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	264
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	79
FspI	TGCGCA	1 cut(s)	86
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	163, 275
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	92
HindII	GTYRAC	1 cut(s)	92
HinfI	GANTC	2 cut(s)	196, 346
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	6 cut(s)	167, 200, 239, 281, 380, 392
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	56, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	163, 275
HspAI	GCGC	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	3 cut(s)	16, 70, 78
LpnPI	CCDG	8 cut(s)	26, 42, 230, 294, 347, 383, 393, 403
LweI	GCATC	1 cut(s)	328
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	3 cut(s)	215, 296, 368
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	2 cut(s)	211, 312
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	8 cut(s)	39, 58, 61, 98, 101, 104, 107, 280
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	84
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	163, 275
NlaIV	GGNNCC	1 cut(s)	366
NsbI	TGCGCA	1 cut(s)	86
NspI	RCATGY	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	3 cut(s)	75, 179, 422
SfaNI	GCATC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	211, 312
SsiI	CCGC	5 cut(s)	76, 79, 143, 156, 269
SstI	GAGCTC	1 cut(s)	75
TaqI	TCGA	2 cut(s)	310, 316
TasI	AATT	2 cut(s)	211, 312
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	266
XapI	RAATTY	1 cut(s)	312
XceI	RCATGY	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.