Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002252

Physical Location & Seq

Genomic Coordinates Reverse (-)

24683229 .. 24686846

Gene Structure 3618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAGCTCATCTATGGGACAACAGTTGCAAGAAGGAGGGGCAAACCAGAAAAGGAAGGCAAGGTTGGAGGATATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCTGCTCTTAAGTACTGGGGATCTTCAACCCACATAAACTTCCCATTGGAAGATTACACAACACAAATTGAAGAAATGAAGAATATGAACCGGCAAGAATACGTTGCGCATCTGAGGAGGAAAAGCAGTGGATTTTCAAGGGGTGCTTCGATTTACCGTGGAGTTACAAGACATCACCAGCATGGGAGATGGCAAGCTCGAATTGGGAGGGTTGCAGGAAACAAGGACCTTTATCTTGGTACATTTGCCACCCAAGAGGAAGCAGCCGAAGCTTATGACATAGCTGCAATTAAGTTCCGTGGGGTAAATGCGGTCACCAACTTCGACATTACCAGATATGATGTTGAGAAAATCATGGCCAGCAATACCTTGCTTGCTGGGGAATTCGCTAGGCGTAACAAAGAGGTTGAACCTAACAAGCAAGTCATTGAGTACAGCTCACCTGCACAGAACAATGTGGAAGCCAGTCCACCTGAAACTAGCCATGGGAATAGTTCAGATTGGAAAATGGCTTTGTTCCAAGCTGCACAGCAACAACAAGAAACTGCTGCTACTTATGTTCAAACACTTGATCAAAAATCAATGTCTTCAGGGAATTACAGAAGTCCTGCAACTTTCTCAATGGCATTGCAGGACCTCATTCGCATTGAATCAGTTAACTCTAGCCAGCAATTGATGGATGAATCAGCTAAAGCCGGTGCTCAGTTTTCAAATCCTTCGTCCTTGGTGACCAGTCTGAGCAGCTCAAGAGAAGATAGCCCCGACAAATCGGCACCCACAATGCTGTTTGCAAAACCTCCAATGGCATCGAAGTTCATAAGTCCAAGTACTTCTGTTGCTGTTAGCTCTTGGTTCCCATCAGCTCAGCTGAGGCCTGCAGCTTCCATCTCCATGTCTCAGTTGCCTCTCTTTGCTGCCTGGAGTGACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010492 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098727 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

348

Amino Acids

38.43

Weight (kDa)

9.01

Isoelectric Point (pI)

59.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	89 - 138	3e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37750
fragaria_vesca	FvH4_1g18270 FvH4_1g18270 FvH4_2g32640 FvH4_2g32640
malus_domestica	MD02G1190000.v1.1 MD08G1077100.v1.1 MD15G1064600.v1.1 MD15G1301100.v1.1
prunus_persica	Prupe.1G418600_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1
pyrus_communis	pycom02g15390 pycom02g15400 pycom08g06410 pycom15g06140 pycom15g26370
rosa_chinensis	RchiOBHm_Chr2g0108831 RchiOBHm_Chr6g0310091
rosa_laevigata	RLG00000010512 RLG00000017692
rosa_multiflora	Rmu_sc0000294.1_g000022 Rmu_sc0003973.1_g000013
rosa_roxburghii	Rroxscaffold_2G00134780 Rroxscaffold_7G00158880
rosa_rugosa	Rorug02G0156300 Rorug02G0156400 Rorug06G0377300 Rorug06G0377300
rosa_samantha	Rh2AG206600 Rh2AG206700 Rh2BG217800 Rh2CG209800 Rh2DG213000 Rh6AG491300 Rh6BG500600 Rh6CG505500 Rh6CG505600 Rh6DG491500 Rh6DG491600
rosa_wichuraiana	Rw2G016430 Rw6G042740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
Acc16I	TGCGCA	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	883
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	139
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	4 cut(s)	125, 352, 545, 940
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	7 cut(s)	138, 182, 249, 521, 674, 761, 822
AjnI	CCWGG	1 cut(s)	1028
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
Alw21I	GWGCWC	1 cut(s)	814
Alw26I	GTCTC	1 cut(s)	1011
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	2 cut(s)	468, 983
ApeKI	GCWGC	9 cut(s)	92, 113, 374, 395, 635, 659, 852, 989, 1025
ApoI	RAATTY	1 cut(s)	494
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	337, 745
AsuHPI	GGTGA	4 cut(s)	278, 418, 543, 850
AvaII	GGWCC	2 cut(s)	337, 745
BalI	TGGCCA	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	883
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	814
BbvCI	CCTCAGC	1 cut(s)	980
BbvI	GCAGC	9 cut(s)	79, 100, 382, 386, 622, 646, 864, 1001, 1012
BccI	CCATC	4 cut(s)	294, 781, 976, 1004
BciT130I	CCWGG	1 cut(s)	1030
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	1011
BfaI	CTAG	4 cut(s)	501, 591, 774, 1042
BfmI	CTRYAG	1 cut(s)	987
BfrI	CTTAAG	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	9 cut(s)	93, 114, 375, 396, 636, 660, 853, 990, 1026
BlpI	GCTNAGC	1 cut(s)	975
BlsI	GCNGC	9 cut(s)	94, 115, 376, 397, 637, 661, 854, 991, 1027
BmcAI	AGTACT	2 cut(s)	125, 940
Bme1390I	CCNGG	1 cut(s)	1030
Bme18I	GGWCC	2 cut(s)	337, 745
BmgT120I	GGNCC	2 cut(s)	337, 745
BmiI	GGNNCC	2 cut(s)	885, 965
BmrFI	CCNGG	1 cut(s)	1030
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	2 cut(s)	229, 926
BmuI	ACTGGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	690
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
Bpu10I	CCTNAGC	1 cut(s)	980
Bpu1102I	GCTNAGC	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	841
BsaJI	CCNNGG	4 cut(s)	268, 409, 595, 834
Bse118I	RCCGGY	2 cut(s)	201, 806
Bse1I	ACTGG	3 cut(s)	131, 576, 843
Bse3DI	GCAATG	1 cut(s)	737
BseBI	CCWGG	1 cut(s)	1030
BseDI	CCNNGG	4 cut(s)	268, 409, 595, 834
BseGI	GGATG	1 cut(s)	796
BseMI	GCAATG	1 cut(s)	737
BseMII	CTCAG	6 cut(s)	215, 827, 839, 971, 989, 1022
BseNI	ACTGG	3 cut(s)	131, 576, 843
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	9 cut(s)	79, 100, 382, 386, 622, 646, 864, 1001, 1012
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	2 cut(s)	540, 621
BshFI	GGCC	2 cut(s)	470, 985
BshNI	GGYRCC	1 cut(s)	883
BsiHKAI	GWGCWC	1 cut(s)	814
BsiSI	CCGG	2 cut(s)	202, 807
BslFI	GGGAC	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	1011
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	470, 985
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp143I	GATC	3 cut(s)	106, 131, 682
Bsp1720I	GCTNAGC	1 cut(s)	975
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	2 cut(s)	470, 985
BspCNI	CTCAG	6 cut(s)	216, 826, 840, 972, 988, 1021
BspLI	GGNNCC	2 cut(s)	885, 965
BspMAI	CTGCAG	1 cut(s)	991
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	883
BspTI	CTTAAG	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	737
BsrFI	RCCGGY	2 cut(s)	201, 806
BsrI	ACTGG	3 cut(s)	131, 576, 843
BssAI	RCCGGY	2 cut(s)	201, 806
BssECI	CCNNGG	4 cut(s)	268, 409, 595, 834
BssMI	GATC	3 cut(s)	106, 131, 682
BssT1I	CCWWGG	2 cut(s)	595, 834
Bst2UI	CCWGG	1 cut(s)	1030
Bst4CI	ACNGT	2 cut(s)	25, 269
Bst6I	CTCTTC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	119
BstC8I	GCNNGC	5 cut(s)	306, 472, 486, 779, 987
BstDEI	CTNAG	6 cut(s)	224, 813, 848, 975, 980, 1008
BstDSI	CCRYGG	3 cut(s)	268, 409, 595
BstEII	GGTNACC	2 cut(s)	424, 838
BstF5I	GGATG	1 cut(s)	796
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	109, 134, 685
BstMAI	GTCTC	1 cut(s)	1011
BstMBI	GATC	3 cut(s)	106, 131, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 380
BstNI	CCWGG	1 cut(s)	1030
BstPI	GGTNACC	2 cut(s)	424, 838
BstSCI	CCNGG	1 cut(s)	1028
BstSFI	CTRYAG	1 cut(s)	987
BstV1I	GCAGC	9 cut(s)	79, 100, 382, 386, 622, 646, 864, 1001, 1012
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	470, 985
BtgI	CCRYGG	3 cut(s)	268, 409, 595
BtsCI	GGATG	1 cut(s)	796
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	5 cut(s)	306, 472, 486, 779, 987
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	2 cut(s)	201, 806
Cfr13I	GGNCC	2 cut(s)	337, 745
Csp6I	GTAC	4 cut(s)	124, 351, 544, 939
CviAII	CATG	4 cut(s)	293, 466, 596, 1003
CviQI	GTAC	4 cut(s)	124, 351, 544, 939
DdeI	CTNAG	6 cut(s)	224, 813, 848, 975, 980, 1008
DpnI	GATC	3 cut(s)	108, 133, 684
DpnII	GATC	3 cut(s)	106, 131, 682
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	595, 834
Eco147I	AGGCCT	1 cut(s)	985
Eco47I	GGWCC	2 cut(s)	337, 745
Eco57I	CTGAAG	1 cut(s)	684
Eco91I	GGTNACC	2 cut(s)	424, 838
EcoO109I	RGGNCCY	2 cut(s)	337, 745
EcoO65I	GGTNACC	2 cut(s)	424, 838
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	1028
EcoT14I	CCWWGG	2 cut(s)	595, 834
ErhI	CCWWGG	2 cut(s)	595, 834
FaeI	CATG	4 cut(s)	296, 469, 599, 1006
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	292, 465, 595, 1002
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	9 cut(s)	93, 114, 375, 396, 636, 660, 853, 990, 1026
FokI	GGATG	1 cut(s)	803
Fsp4HI	GCNGC	9 cut(s)	93, 114, 375, 396, 636, 660, 853, 990, 1026
FspBI	CTAG	4 cut(s)	501, 591, 774, 1042
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	9 cut(s)	93, 114, 375, 396, 636, 660, 853, 990, 1026
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	470, 985
HapII	CCGG	2 cut(s)	202, 807
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	296, 469, 599, 1006
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	2 cut(s)	761, 794
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	2 cut(s)	202, 807
HphI	GGTGA	4 cut(s)	278, 418, 543, 850
Hpy166II	GTNNAC	2 cut(s)	581, 769
Hpy188I	TCNGA	3 cut(s)	225, 610, 849
Hpy188III	TCNNGA	1 cut(s)	858
Hpy8I	GTNNAC	2 cut(s)	581, 769
HpyAV	CCTTC	3 cut(s)	27, 50, 837
HpyCH4III	ACNGT	2 cut(s)	25, 269
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 380
HpyF3I	CTNAG	6 cut(s)	224, 813, 848, 975, 980, 1008
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	296, 469, 599, 1006
HspAI	GCGC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	682
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	3 cut(s)	106, 131, 682
Lsp1109I	GCAGC	9 cut(s)	79, 100, 382, 386, 622, 646, 864, 1001, 1012
LweI	GCATC	2 cut(s)	229, 926
MaeI	CTAG	4 cut(s)	501, 591, 774, 1042
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	5 cut(s)	274, 424, 506, 838, 1034
MalI	GATC	3 cut(s)	108, 133, 684
MboI	GATC	3 cut(s)	106, 131, 682
MboII	GAAGA	7 cut(s)	95, 126, 173, 194, 202, 690, 875
MfeI	CAATTG	1 cut(s)	782
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	814
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	6 cut(s)	177, 312, 399, 494, 706, 782
MluNI	TGGCCA	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	46
Mox20I	TGGCCA	1 cut(s)	470
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	3 cut(s)	120, 402, 768
MslI	CAYNNNNRTG	2 cut(s)	291, 1001
Msp20I	TGGCCA	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	979
MspCI	CTTAAG	1 cut(s)	119
MspI	CCGG	2 cut(s)	202, 807
MspR9I	CCNGG	1 cut(s)	1030
MunI	CAATTG	1 cut(s)	782
MvaI	CCWGG	1 cut(s)	1030
MwoI	GCNNNNNNNGC	2 cut(s)	98, 380
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	3 cut(s)	106, 131, 682
NlaIII	CATG	4 cut(s)	296, 469, 599, 1006
NlaIV	GGNNCC	2 cut(s)	885, 965
NmuCI	GTSAC	3 cut(s)	424, 838, 1034
NsbI	TGCGCA	1 cut(s)	219
PaqCI	CACCTGC	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	985
PfeI	GAWTC	2 cut(s)	761, 794
PkrI	GCNGC	9 cut(s)	94, 115, 376, 397, 637, 661, 854, 991, 1027
PpuMI	RGGWCCY	2 cut(s)	337, 745
Psp5II	RGGWCCY	2 cut(s)	337, 745
Psp6I	CCWGG	1 cut(s)	1028
PspEI	GGTNACC	2 cut(s)	424, 838
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	1028
PspN4I	GGNNCC	2 cut(s)	885, 965
PspPI	GGNCC	2 cut(s)	337, 745
PspPPI	RGGWCCY	2 cut(s)	337, 745
PstI	CTGCAG	1 cut(s)	991
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	979
RsaI	GTAC	4 cut(s)	125, 352, 545, 940
RsaNI	GTAC	4 cut(s)	124, 351, 544, 939
RseI	CAYNNNNRTG	2 cut(s)	291, 1001
SaqAI	TTAA	3 cut(s)	120, 402, 768
SatI	GCNGC	9 cut(s)	93, 114, 375, 396, 636, 660, 853, 990, 1026
Sau3AI	GATC	3 cut(s)	106, 131, 682
Sau96I	GGNCC	2 cut(s)	337, 745
ScaI	AGTACT	2 cut(s)	125, 940
ScrFI	CCNGG	1 cut(s)	1030
SduI	GDGCHC	1 cut(s)	814
SfaNI	GCATC	2 cut(s)	229, 926
SfcI	CTRYAG	1 cut(s)	987
SinI	GGWCC	2 cut(s)	337, 745
SmiMI	CAYNNNNRTG	2 cut(s)	291, 1001
SmlI	CTYRAG	2 cut(s)	119, 856
SmoI	CTYRAG	2 cut(s)	119, 856
Sse9I	AATT	6 cut(s)	177, 312, 399, 494, 706, 782
SseBI	AGGCCT	1 cut(s)	985
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	4 cut(s)	501, 591, 774, 1042
StuI	AGGCCT	1 cut(s)	985
StyD4I	CCNGG	1 cut(s)	1028
StyI	CCWWGG	2 cut(s)	595, 834
TaaI	ACNGT	2 cut(s)	25, 269
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	4 cut(s)	260, 310, 435, 920
TasI	AATT	6 cut(s)	177, 312, 399, 494, 706, 782
TatI	WGTACW	3 cut(s)	123, 543, 938
TfiI	GAWTC	2 cut(s)	761, 794
Tru1I	TTAA	3 cut(s)	120, 402, 768
Tru9I	TTAA	3 cut(s)	120, 402, 768
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	3 cut(s)	424, 838, 1034
TseI	GCWGC	9 cut(s)	92, 113, 374, 395, 635, 659, 852, 989, 1025
Tsp45I	GTSAC	3 cut(s)	424, 838, 1034
TspDTI	ATGAA	5 cut(s)	17, 203, 212, 807, 916
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	244
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	337, 745
XapI	RAATTY	1 cut(s)	494
XspI	CTAG	4 cut(s)	501, 591, 774, 1042
ZrmI	AGTACT	2 cut(s)	125, 940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.