Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002252

Physical Location & Seq

Genomic Coordinates Forward (+)

20954599 .. 20955956

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG206600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAAATCCATGAGTAATGATAACACCAACAGTAGCAATAACTGGTTGGATTTTTCTCTCTCCCCTAACATGAAAATGGATGTTCCTCATCCTCCTTCAGACCCTCACCACCAAATTTCTCAGTCCTCTTCTCCTTCTATTCCAAATGCCTTTTTCAACTCCCCACCTCACTTTAACTATGGAATATACTATGGAGTTGATCAAGGAGATCACACTGGCTTGTACTCTGCTTTGCCCATGATGCCAATAAAGTCTGATGGTTCTCTTTGCATAATGGAAGCTCTCAACAGGTCTCATCATCCTCAAGGAATGGGAACTAGTAGTTCAAGTTCAACTCCAAAACTAGAGGACTTCTTTGGTGGTGCAACCATGGGGACCCATAACCACTATGACAACAATGACAGAGAAGCTCTAAGCTTAGACAGCATGTTTTACCAACAAATCCCAACCCATCATCATCACCATGAGCCAAACAACAACAGCCAAAACTTGCTCAACCAAGAACATGAGTCCCAACAGCAACATTTCTCGTCCTACTACTCTGGCCTAAAAGCCCATGAAATGATGTTTGAGGATCATCAGAAGCAGCAAGCCCAGATTGAGCATTACAACAATGTCCAAAACCCAAGTTTGGGGTCACTTAATCACAGCATTTCTGATATGAAGAACTGGGTTCCCAGAAATTTCTCAGCTAATAATAATCAAGGGGTGTTGGAGCAGAACATGATTGGGTGCATGGGTGACAATGGTGCCGAATCTGCAGGGTCTATTGGGTCAATGCCTTACGGGGATTTACAGTGTTTGAGCTTGTCAATGAGCCCTGGCTCTCAATCAAGCTGTGTTACTGGTTCACAGCAAATCTCACCCACTTTGACTACTAATACGGATTGTGTAGTCGCCATGGATTCTTCCAAGAAAAGAGGGCCTGAAAAAGTGGAGCAAAAGCAAATTGTTCATAGGAAGTCTCTGGATACATTTGGGCAGAGAACTTCTCAGTATAGAGGAGTCACAAGGCATAGATGGACTGGTAGATATGAAGCTCATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAGAGCAGGAAAGGAAGACAAGGTTGGTGGAGCAATCTAGCTATATTCAAATTCAAAATGATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010492 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098727 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

380

Amino Acids

42.72

Weight (kDa)

6.53

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37750
fragaria_vesca	FvH4_1g18270 FvH4_1g18270 FvH4_2g32640 FvH4_2g32640
malus_domestica	MD02G1190000.v1.1 MD08G1077100.v1.1 MD15G1064600.v1.1 MD15G1301100.v1.1
prunus_persica	Prupe.1G418600_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1
pyrus_communis	pycom02g15390 pycom02g15400 pycom08g06410 pycom15g06140 pycom15g26370
rosa_chinensis	RchiOBHm_Chr2g0108831 RchiOBHm_Chr6g0310091
rosa_laevigata	RLG00000010512 RLG00000017692
rosa_multiflora	Rmu_sc0000294.1_g000022 Rmu_sc0003973.1_g000013
rosa_roxburghii	Rroxscaffold_2G00134780 Rroxscaffold_7G00158880
rosa_rugosa	Rorug02G0156300 Rorug02G0156400 Rorug06G0377300 Rorug06G0377300
rosa_samantha	Rh2AG206600 Rh2AG206700 Rh2BG217800 Rh2CG209800 Rh2DG213000 Rh6AG491300 Rh6BG500600 Rh6CG505500 Rh6CG505600 Rh6DG491500 Rh6DG491600
rosa_wichuraiana	Rw2G016430 Rw6G042740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	749
AclWI	GGATC	1 cut(s)	582
AcsI	RAATTY	3 cut(s)	114, 682, 1124
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	631, 632
AgsI	TTSAA	5 cut(s)	157, 327, 333, 1123, 1129
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	820
AjuI	GAANNNNNNNTTGG	2 cut(s)	1081, 1113
AluBI	AGCT	8 cut(s)	281, 410, 417, 692, 807, 837, 1040, 1115
AluI	AGCT	8 cut(s)	281, 410, 417, 692, 807, 837, 1040, 1115
Alw26I	GTCTC	2 cut(s)	297, 969
AlwI	GGATC	1 cut(s)	582
AoxI	GGCC	2 cut(s)	544, 923
ApeKI	GCWGC	1 cut(s)	586
ApoI	RAATTY	3 cut(s)	114, 682, 1124
AspS9I	GGNCC	2 cut(s)	375, 923
AsuHPI	GGTGA	4 cut(s)	98, 452, 752, 855
AvaII	GGWCC	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	1096
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	3 cut(s)	251, 459, 1014
BciT130I	CCWGG	1 cut(s)	822
BciVI	GTATCC	1 cut(s)	964
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	297, 969
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	3 cut(s)	318, 344, 1112
BfmI	CTRYAG	1 cut(s)	759
BfuI	GTATCC	1 cut(s)	964
BisI	GCNGC	1 cut(s)	587
BlsI	GCNGC	1 cut(s)	588
Bme1390I	CCNGG	1 cut(s)	822
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	375, 923
BmiI	GGNNCC	4 cut(s)	376, 377, 675, 751
BmrFI	CCNGG	1 cut(s)	822
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	1096
BplI	GAGNNNNNCTC	2 cut(s)	976, 1008
BpuEI	CTTGAG	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	3 cut(s)	369, 820, 900
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 632
Bse1I	ACTGG	5 cut(s)	47, 220, 674, 850, 1030
BseBI	CCWGG	1 cut(s)	822
BseDI	CCNNGG	3 cut(s)	369, 820, 900
BseGI	GGATG	3 cut(s)	85, 88, 298
BseLI	CCNNNNNNNGG	2 cut(s)	631, 632
BseMII	CTCAG	3 cut(s)	134, 702, 1007
BseNI	ACTGG	5 cut(s)	47, 220, 674, 850, 1030
BseRI	GAGGAG	1 cut(s)	1017
BseXI	GCAGC	1 cut(s)	598
BshFI	GGCC	2 cut(s)	546, 925
BshNI	GGYRCC	1 cut(s)	749
BslFI	GGGAC	3 cut(s)	388, 496, 1064
BslI	CCNNNNNNNGG	2 cut(s)	631, 632
BsmAI	GTCTC	2 cut(s)	297, 969
BsmFI	GGGAC	3 cut(s)	388, 496, 1064
BsnI	GGCC	2 cut(s)	546, 925
Bso31I	GGTCTC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	821
Bsp143I	GATC	3 cut(s)	199, 208, 574
Bsp19I	CCATGG	2 cut(s)	369, 900
BspANI	GGCC	2 cut(s)	546, 925
BspCNI	CTCAG	3 cut(s)	133, 701, 1006
BspLI	GGNNCC	4 cut(s)	376, 377, 675, 751
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	1 cut(s)	582
BspT107I	GGYRCC	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	297
BsrI	ACTGG	5 cut(s)	47, 220, 674, 850, 1030
BssECI	CCNNGG	3 cut(s)	369, 820, 900
BssMI	GATC	3 cut(s)	199, 208, 574
BssT1I	CCWWGG	2 cut(s)	369, 900
Bst2UI	CCWGG	1 cut(s)	822
Bst4CI	ACNGT	3 cut(s)	32, 798, 1058
Bst6I	CTCTTC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	5 cut(s)	120, 413, 418, 688, 993
BstDSI	CCRYGG	2 cut(s)	369, 900
BstF5I	GGATG	3 cut(s)	85, 88, 298
BstKTI	GATC	3 cut(s)	202, 211, 577
BstMAI	GTCTC	2 cut(s)	297, 969
BstMBI	GATC	3 cut(s)	199, 208, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 423, 758
BstNI	CCWGG	1 cut(s)	822
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	820
BstSFI	CTRYAG	1 cut(s)	759
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	1 cut(s)	1096
BsuI	GTATCC	1 cut(s)	964
BsuRI	GGCC	2 cut(s)	546, 925
BtgI	CCRYGG	2 cut(s)	369, 900
BtsCI	GGATG	3 cut(s)	85, 88, 298
BtsIMutI	CAGTG	2 cut(s)	213, 803
Cac8I	GCNNGC	1 cut(s)	591
Cfr13I	GGNCC	2 cut(s)	375, 923
Csp6I	GTAC	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	1082, 1117
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	5 cut(s)	120, 413, 418, 688, 993
DpnI	GATC	3 cut(s)	201, 210, 576
DpnII	GATC	3 cut(s)	199, 208, 574
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	369, 900
Eco24I	GRGCYC	1 cut(s)	821
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	81
EcoO109I	RGGNCCY	2 cut(s)	375, 923
EcoRII	CCWGG	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	369, 900
EcoT38I	GRGCYC	1 cut(s)	821
ErhI	CCWWGG	2 cut(s)	369, 900
FaqI	GGGAC	3 cut(s)	388, 496, 1064
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	3 cut(s)	75, 92, 285
FriOI	GRGCYC	1 cut(s)	821
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	3 cut(s)	318, 344, 1112
GluI	GCNGC	1 cut(s)	587
HaeIII	GGCC	2 cut(s)	546, 925
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	4 cut(s)	509, 755, 905, 1005
HphI	GGTGA	4 cut(s)	98, 452, 752, 855
Hpy166II	GTNNAC	1 cut(s)	851
Hpy188I	TCNGA	5 cut(s)	100, 256, 582, 658, 1077
Hpy188III	TCNNGA	1 cut(s)	968
Hpy8I	GTNNAC	1 cut(s)	851
HpyAV	CCTTC	3 cut(s)	105, 144, 1064
HpyCH4III	ACNGT	3 cut(s)	32, 798, 1058
HpyCH4V	TGCA	5 cut(s)	270, 365, 735, 761, 1062
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 423, 758
HpyF3I	CTNAG	5 cut(s)	120, 413, 418, 688, 993
KflI	GGGWCCC	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	199, 208, 574
LmnI	GCTCC	3 cut(s)	715, 937, 1104
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	3 cut(s)	318, 344, 1112
MaeIII	GTNAC	4 cut(s)	636, 740, 841, 1006
MalI	GATC	3 cut(s)	201, 210, 576
MboI	GATC	3 cut(s)	199, 208, 574
MboII	GAAGA	4 cut(s)	120, 676, 900, 1101
MhlI	GDGCHC	1 cut(s)	821
MluCI	AATT	4 cut(s)	114, 682, 948, 1124
MlyI	GAGTC	2 cut(s)	518, 1014
MmeI	TCCRAC	2 cut(s)	27, 693
MseI	TTAA	2 cut(s)	174, 642
MslI	CAYNNNNRTG	2 cut(s)	74, 462
MspR9I	CCNGG	1 cut(s)	822
MvaI	CCWGG	1 cut(s)	822
MwoI	GCNNNNNNNGC	3 cut(s)	241, 423, 758
NcoI	CCATGG	2 cut(s)	369, 900
NdeII	GATC	3 cut(s)	199, 208, 574
NlaIV	GGNNCC	4 cut(s)	376, 377, 675, 751
NmuCI	GTSAC	3 cut(s)	636, 740, 1006
NspI	RCATGY	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	755, 905
PkrI	GCNGC	1 cut(s)	588
PleI	GAGTC	2 cut(s)	517, 1013
PpsI	GAGTC	2 cut(s)	517, 1013
PpuMI	RGGWCCY	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	820
PspGI	CCWGG	1 cut(s)	820
PspN4I	GGNNCC	4 cut(s)	376, 377, 675, 751
PspPI	GGNCC	2 cut(s)	375, 923
PspPPI	RGGWCCY	1 cut(s)	375
PsrI	GAACNNNNNNTAC	2 cut(s)	313, 345
PstI	CTGCAG	1 cut(s)	763
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	2 cut(s)	74, 462
SaqAI	TTAA	2 cut(s)	174, 642
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	3 cut(s)	199, 208, 574
Sau96I	GGNCC	2 cut(s)	375, 923
SchI	GAGTC	2 cut(s)	518, 1014
ScrFI	CCNGG	1 cut(s)	822
SduI	GDGCHC	1 cut(s)	821
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	1 cut(s)	375
SmiMI	CAYNNNNRTG	2 cut(s)	74, 462
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	4 cut(s)	114, 682, 948, 1124
SspMI	CTAG	3 cut(s)	318, 344, 1112
StyD4I	CCNGG	1 cut(s)	820
StyI	CCWWGG	2 cut(s)	369, 900
TaaI	ACNGT	3 cut(s)	32, 798, 1058
TasI	AATT	4 cut(s)	114, 682, 948, 1124
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	755, 905
Tru1I	TTAA	2 cut(s)	174, 642
Tru9I	TTAA	2 cut(s)	174, 642
TscAI	CASTG	2 cut(s)	220, 803
TseFI	GTSAC	3 cut(s)	636, 740, 1006
TseI	GCWGC	1 cut(s)	586
Tsp45I	GTSAC	3 cut(s)	636, 740, 1006
TspDTI	ATGAA	6 cut(s)	17, 86, 573, 677, 944, 1050
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	2 cut(s)	220, 803
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	3 cut(s)	114, 682, 1124
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	3 cut(s)	318, 344, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.