Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002252

Physical Location & Seq

Genomic Coordinates Forward (+)

66727446 .. 66728507

Gene Structure 1062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG505500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAGCCCATACATGATCACAGTCATAACAACAATGGAAGCCATATTAACAATAACAACAACTGGTTGGGGTTTTCACTCTCAGCTCCCCACATGAAAATGGAGGTCACTTCTTCTTCTGACCCTCATCAACACTACAGTCATCAACAAGCTCAGGCCTCCTCTGCTTCAGCTCAGCTTCCAAGTAGCTTCTACAATCTGACCCCACTCTGCTATGAAAATGGTGGGTTTCACTCTCCCTTGACTGTAATGCCACTCAAGTCAGATGGGTCTCTTTGCATCATGGAAGCTCTCACTCGCTCACAAGCTGAAGGAATGGTGCCGAACTCGTCCCCAAAACTTGAGGACTTTCTAGGAGGAGCAAGCATGGGAGCTCATGACTATGGAACCCATCAAAGAGAGGTGGCAATGGCTCTCAGCTTAGACAGCTTGTATTACAATGAAAATGCAGAGGCAGAGCAACAATACTACTCTGGAATCCCTTTCCCTGGAGCTTACCAAACTCAAATGGAGGAAGAGTCCTCTAAGCAAGCCCACATTGTGGGCTGTGATAGTCACCAAATGACCCAGAACTGGGTGACTAGGCAGTACTCTGCTGCTCATCATGCTTTCAATCAACAACACATGAGTAACAACAGCTTGGACAATGGAGGAGTTTCTGGGTCTGTTAATGGTGGAATGCAGTGTGGGGATTTACAGTCTCTTACTTTGTCCATGAGCCCTGGATCTCAGTCCAGCTGTGTCACAGCTCCAAGGCAGATCTCACCCACTGAAACAGAGAGTCTAGCCATGGAAACCAAGAAGAGAGGTTCTGGTAAAATTAGTCAAACAAAGCAGCCAGTGCACAGAAAGTCCATTGACACATTTGGGCAGAGAACTTCACAGTATAGAGGAGTCACAAGGTTAGAGTTTCTCCTAAAACCAGTTAATTCCTTGAATTTCACTATGTTAGTCAAAATTTTGTTTTTGTTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010492 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098727 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

325

Amino Acids

35.76

Weight (kDa)

6.36

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37750
fragaria_vesca	FvH4_1g18270 FvH4_1g18270 FvH4_2g32640 FvH4_2g32640
malus_domestica	MD02G1190000.v1.1 MD08G1077100.v1.1 MD15G1064600.v1.1 MD15G1301100.v1.1
prunus_persica	Prupe.1G418600_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1
pyrus_communis	pycom02g15390 pycom02g15400 pycom08g06410 pycom15g06140 pycom15g26370
rosa_chinensis	RchiOBHm_Chr2g0108831 RchiOBHm_Chr6g0310091
rosa_laevigata	RLG00000010512 RLG00000017692
rosa_multiflora	Rmu_sc0000294.1_g000022 Rmu_sc0003973.1_g000013
rosa_roxburghii	Rroxscaffold_2G00134780 Rroxscaffold_7G00158880
rosa_rugosa	Rorug02G0156300 Rorug02G0156400 Rorug06G0377300 Rorug06G0377300
rosa_samantha	Rh2AG206600 Rh2AG206700 Rh2BG217800 Rh2CG209800 Rh2DG213000 Rh6AG491300 Rh6BG500600 Rh6CG505500 Rh6CG505600 Rh6DG491500 Rh6DG491600
rosa_wichuraiana	Rw2G016430 Rw6G042740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	541
AclWI	GGATC	1 cut(s)	733
AcsI	RAATTY	2 cut(s)	937, 957
AcuI	CTGAAG	2 cut(s)	153, 330
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	4 cut(s)	488, 541, 573, 574
AgsI	TTSAA	2 cut(s)	613, 937
AjnI	CCWGG	2 cut(s)	487, 721
Alw21I	GWGCWC	2 cut(s)	376, 846
Alw26I	GTCTC	2 cut(s)	276, 705
Alw44I	GTGCAC	1 cut(s)	842
AlwI	GGATC	1 cut(s)	733
AoxI	GGCC	1 cut(s)	156
ApaLI	GTGCAC	1 cut(s)	842
ApeKI	GCWGC	2 cut(s)	596, 835
ApoI	RAATTY	2 cut(s)	937, 957
AsuHPI	GGTGA	3 cut(s)	548, 589, 756
BaeGI	GKGCMC	1 cut(s)	846
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	376, 722
Bbv12I	GWGCWC	2 cut(s)	376, 846
BbvI	GCAGC	2 cut(s)	583, 847
BccI	CCATC	2 cut(s)	260, 399
BciT130I	CCWGG	2 cut(s)	489, 723
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	276, 705
BfaI	CTAG	3 cut(s)	353, 582, 785
BfmI	CTRYAG	1 cut(s)	136
BglII	AGATCT	1 cut(s)	759
BisI	GCNGC	2 cut(s)	597, 836
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	2 cut(s)	598, 837
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	2 cut(s)	489, 723
BmiI	GGNNCC	2 cut(s)	321, 388
BmrFI	CCNGG	2 cut(s)	489, 723
BmrI	ACTGGG	1 cut(s)	583
BmsI	GCATC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	242, 362
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	487, 721, 752, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	4 cut(s)	488, 541, 573, 574
Bse1I	ACTGG	4 cut(s)	68, 578, 839, 923
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	489, 723
BseDI	CCNNGG	4 cut(s)	487, 721, 752, 789
BseLI	CCNNNNNNNGG	4 cut(s)	488, 541, 573, 574
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	5 cut(s)	96, 167, 188, 430, 743
BseNI	ACTGG	4 cut(s)	68, 578, 839, 923
BseRI	GAGGAG	4 cut(s)	151, 372, 666, 906
BseSI	GKGCMC	1 cut(s)	846
BseXI	GCAGC	2 cut(s)	583, 847
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	376, 846
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	4 cut(s)	488, 541, 573, 574
BsmAI	GTCTC	2 cut(s)	276, 705
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	3 cut(s)	376, 722, 846
Bsp143I	GATC	3 cut(s)	16, 725, 759
Bsp1720I	GCTNAGC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	789
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	5 cut(s)	95, 166, 187, 429, 742
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	321, 388
BspPI	GGATC	1 cut(s)	733
BspT107I	GGYRCC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	4 cut(s)	68, 578, 839, 923
BssECI	CCNNGG	4 cut(s)	487, 721, 752, 789
BssMI	GATC	3 cut(s)	16, 725, 759
BssT1I	CCWWGG	2 cut(s)	752, 789
Bst2UI	CCWGG	2 cut(s)	489, 723
Bst4CI	ACNGT	5 cut(s)	23, 140, 247, 699, 885
Bst6I	CTCTTC	2 cut(s)	510, 797
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstC8I	GCNNGC	2 cut(s)	364, 531
BstDEI	CTNAG	7 cut(s)	82, 153, 174, 416, 421, 525, 729
BstDSI	CCRYGG	1 cut(s)	789
BstKTI	GATC	3 cut(s)	19, 728, 762
BstMAI	GTCTC	2 cut(s)	276, 705
BstMBI	GATC	3 cut(s)	16, 725, 759
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 426, 605, 841
BstNI	CCWGG	2 cut(s)	489, 723
BstSCI	CCNGG	2 cut(s)	487, 721
BstSFI	CTRYAG	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	846
BstV1I	GCAGC	2 cut(s)	583, 847
BstX2I	RGATCY	2 cut(s)	725, 759
BstYI	RGATCY	2 cut(s)	725, 759
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	789
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	3 cut(s)	689, 768, 846
Cac8I	GCNNGC	2 cut(s)	364, 531
CciI	TCATGA	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	9 cut(s)	14, 94, 283, 367, 377, 605, 625, 715, 790
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	7 cut(s)	82, 153, 174, 416, 421, 525, 729
DpnI	GATC	3 cut(s)	18, 727, 761
DpnII	GATC	3 cut(s)	16, 725, 759
DraIII	CACNNNGTG	1 cut(s)	541
Eam1104I	CTCTTC	2 cut(s)	510, 797
EarI	CTCTTC	2 cut(s)	510, 797
Ecl136II	GAGCTC	1 cut(s)	374
Eco130I	CCWWGG	2 cut(s)	752, 789
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	2 cut(s)	376, 722
Eco31I	GGTCTC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	374
Eco57I	CTGAAG	2 cut(s)	153, 330
EcoICRI	GAGCTC	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	487, 721
EcoT14I	CCWWGG	2 cut(s)	752, 789
EcoT38I	GRGCYC	2 cut(s)	376, 722
ErhI	CCWWGG	2 cut(s)	752, 789
FaeI	CATG	9 cut(s)	17, 97, 286, 370, 380, 608, 628, 718, 793
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	9 cut(s)	13, 93, 282, 366, 376, 604, 624, 714, 789
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	597, 836
FriOI	GRGCYC	2 cut(s)	376, 722
Fsp4HI	GCNGC	2 cut(s)	597, 836
FspBI	CTAG	3 cut(s)	353, 582, 785
GluI	GCNGC	2 cut(s)	597, 836
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	158
Hin1II	CATG	9 cut(s)	17, 97, 286, 370, 380, 608, 628, 718, 793
HinfI	GANTC	4 cut(s)	477, 518, 781, 894
HphI	GGTGA	3 cut(s)	548, 589, 756
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188I	TCNGA	3 cut(s)	121, 201, 265
Hpy188III	TCNNGA	2 cut(s)	377, 474
Hpy8I	GTNNAC	1 cut(s)	844
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	5 cut(s)	23, 140, 247, 699, 885
HpyCH4V	TGCA	4 cut(s)	279, 449, 682, 844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 426, 605, 841
HpyF3I	CTNAG	7 cut(s)	82, 153, 174, 416, 421, 525, 729
Hsp92II	CATG	9 cut(s)	17, 97, 286, 370, 380, 608, 628, 718, 793
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 725, 759
LmnI	GCTCC	5 cut(s)	91, 359, 371, 491, 754
Lsp1109I	GCAGC	2 cut(s)	583, 847
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	3 cut(s)	353, 582, 785
MaeIII	GTNAC	6 cut(s)	106, 554, 577, 629, 742, 895
MalI	GATC	3 cut(s)	18, 727, 761
MboI	GATC	3 cut(s)	16, 725, 759
MboII	GAAGA	4 cut(s)	105, 108, 527, 814
MflI	RGATCY	2 cut(s)	725, 759
MhlI	GDGCHC	3 cut(s)	376, 722, 846
MluCI	AATT	4 cut(s)	819, 928, 937, 957
MlyI	GAGTC	3 cut(s)	527, 790, 903
MseI	TTAA	3 cut(s)	48, 669, 927
MslI	CAYNNNNRTG	2 cut(s)	98, 381
MspA1I	CMGCKG	1 cut(s)	738
MspR9I	CCNGG	2 cut(s)	489, 723
Mva1269I	GAATGC	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	489, 723
MwoI	GCNNNNNNNGC	4 cut(s)	164, 426, 605, 841
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	3 cut(s)	16, 725, 759
NlaIII	CATG	9 cut(s)	17, 97, 286, 370, 380, 608, 628, 718, 793
NlaIV	GGNNCC	2 cut(s)	321, 388
NmuCI	GTSAC	5 cut(s)	106, 554, 577, 742, 895
PagI	TCATGA	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	158
PctI	GAATGC	1 cut(s)	684
PfeI	GAWTC	1 cut(s)	477
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	598, 837
PleI	GAGTC	3 cut(s)	526, 789, 902
PpsI	GAGTC	3 cut(s)	526, 789, 902
Psp124BI	GAGCTC	1 cut(s)	376
Psp6I	CCWGG	2 cut(s)	487, 721
PspGI	CCWGG	2 cut(s)	487, 721
PspN4I	GGNNCC	2 cut(s)	321, 388
PsuI	RGATCY	2 cut(s)	725, 759
PvuII	CAGCTG	1 cut(s)	738
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	2 cut(s)	98, 381
SacI	GAGCTC	1 cut(s)	376
SaqAI	TTAA	3 cut(s)	48, 669, 927
SatI	GCNGC	2 cut(s)	597, 836
Sau3AI	GATC	3 cut(s)	16, 725, 759
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	3 cut(s)	527, 790, 903
ScrFI	CCNGG	2 cut(s)	489, 723
SduI	GDGCHC	3 cut(s)	376, 722, 846
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	98, 381
SmlI	CTYRAG	2 cut(s)	257, 341
SmoI	CTYRAG	2 cut(s)	257, 341
Sse9I	AATT	4 cut(s)	819, 928, 937, 957
SseBI	AGGCCT	1 cut(s)	158
SspMI	CTAG	3 cut(s)	353, 582, 785
SstI	GAGCTC	1 cut(s)	376
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	487, 721
StyI	CCWWGG	2 cut(s)	752, 789
TaaI	ACNGT	5 cut(s)	23, 140, 247, 699, 885
TasI	AATT	4 cut(s)	819, 928, 937, 957
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	3 cut(s)	48, 669, 927
Tru9I	TTAA	3 cut(s)	48, 669, 927
TscAI	CASTG	3 cut(s)	689, 775, 846
TseFI	GTSAC	5 cut(s)	106, 554, 577, 742, 895
TseI	GCWGC	2 cut(s)	596, 835
Tsp45I	GTSAC	5 cut(s)	106, 554, 577, 742, 895
TspDTI	ATGAA	4 cut(s)	17, 110, 231, 456
TspRI	CASTG	3 cut(s)	689, 775, 846
Van91I	CCANNNNNTGG	1 cut(s)	541
VneI	GTGCAC	1 cut(s)	842
XapI	RAATTY	2 cut(s)	937, 957
XspI	CTAG	3 cut(s)	353, 582, 785
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.