Rh2BG217800

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
20985350 .. 20988380
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG217800.1

Sequence Viewer

Length: 1728 bp
ATGAAATCCATGAGTAATGATAACACCAACAGTAGCAATAACTGGTTGGATTTTTCTCTCTCCCCTAACATGAAAATGGATGTTCCTCATCCTCCTTCAGACCCTCACCACCAAATTTCTCAGTCCTCTTCTCCTTCTATTCCAAATGCCTTTTTCAACTCCCCACCTCTTTTTAACTATGGAATATACTATGGAGTTGATCAAGGAGATCACACTGGCTTGTACTCTGCTTTGCCCATGATGCCAATAAAGTCTGATGGTTCTCTTTGCATAATGGAAGCTCTCAACAGGTCTCATCATCCTCAAGGAATGGGAACTAGTAGTTCAAGTTCAACTCCAAAACTAGAGGACTTCTTTGGTGGTGCAACCATGGGGACCCATAACCACTATGACAACAATGACAGAGAAGCTCTAAGCTTAGACAGCATGTTTTACCAACAAATCCCAACCCATCATCATCACCATGAGCCAAACAACAACAGCCAAAACTTGCTCAACCAAGAACATGAGTCCCAACAGCAACATTTCTCGTCCTACTACTCTGGCCTAAAAACCCATGAAATGATGTTTGAGGATCATCAGAAGCAGCAAGCCCAGATTGAGCATTACAACAATGTCCAAAACCCAAGTTTGGGGTCACTTAATCACAGCATTTCTGATATGAAGAACTGGGTTCCCAGAAATTTCTCAGCTAATAATAATCAAGGGGTGTTGGAGCAGAACATGATTGGGTGCATGGGTGACAATGGTGCCGAATCTGCAGGGTCTATTGGGTCAATGCCTTACGGGGATTTACAGTGTTTGAGCTTGTCAATGAGCCCTGGCTCTCAATCAAGCTGTGTTACTGGTTCACAGCAAATCTCACCCACTTTGACTACTAATACGGATTGTGTAGTCGCCATGGATTCTTCCAAGAAAAGAGGGCCTGAAAAAGTGGAGCAAAAGCAAATTGTTCATAGGAAGTCTCTGGATACATTTGGGCAGAGAACTTCTCAGTATAGAGGAGTCACAAGGAAAAGCAGTGGATTCTCAAGGGGGGCATCAATGTACAGAGGAGTGACAAGACATCATCAACATGGAAGATGGCAAGCTCGGATTGGAAGGGTTGCTGGGAATAAGGATCTTTACCTTGGGACATTCAGCACACAAGAGGAAGCTGCTGAGGCTTATGACATTGCGGCCATAAAATTTCGAGGACTGAATGCTGTGACCAACTTTGACATAACAAGGTACGATGTGGATCGAATCATGGCAAGCAATACCCTTCTTGCTGGAGACAATGCCAAGCGAAACAAGGTGCTGCCTCGACCAAGTGATGAGGCTACTAACCAAATCAGCAATGGTGAACAAAGCATTACTGTCGCAGTTAAGGACACCAATGAAGTTGAGGAATGGAAAATGATGCAGCTCTTTCAGTCTTCCCAGCAAGTAGTTGATCATCAAAATGTGATTCAAGCAGATCATCGAGCAGAAGAATCCGCAACAATGGGGACTACTACTCACTTGTCTAACACCTCTTCGTTGGTGACAAGCTTGAGCAGCTCAAGAGAAGGCAGCCCTGACAAGTCAAGCCAACCAAGTTTCTTTGGAATGCCTCCAACTGCTTCTAAGTTCTTCTCAAGTTCTGGTACTAATAATACGGTCAGTTCTTGGATCCCAGCAGTCCAATCCAGGCCAGGTCTATCCCTCCCTCACATGCCCATTTTTGCTGCCTGGACTGATGCTTGA

Protein Analysis

575

Amino Acids

63.47

Weight (kDa)

6.18

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 350 - 399 8e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 749
AciI CCGC 2 cut(s) 1178, 1479
AclWI GGATC 5 cut(s) 582, 1128, 1248, 1648, 1661
AcoI YGGCCR 1 cut(s) 1179
AcsI RAATTY 3 cut(s) 114, 682, 1187
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 4 cut(s) 224, 1049, 1232, 1630
AfiI CCNNNNNNNGG 2 cut(s) 631, 632
AgsI TTSAA 4 cut(s) 157, 327, 333, 1454
AhlI ACTAGT 1 cut(s) 317
AjnI CCWGG 4 cut(s) 820, 1670, 1675, 1712
Alw26I GTCTC 3 cut(s) 297, 969, 1269
AlwI GGATC 5 cut(s) 582, 1128, 1248, 1648, 1661
AoxI GGCC 4 cut(s) 544, 923, 1179, 1673
ApeKI GCWGC 7 cut(s) 586, 1157, 1300, 1405, 1539, 1554, 1709
ApoI RAATTY 3 cut(s) 114, 682, 1187
AspS9I GGNCC 2 cut(s) 375, 923
AsuHPI GGTGA 6 cut(s) 98, 452, 752, 855, 1355, 1537
AvaII GGWCC 1 cut(s) 375
BamHI GGATCC 1 cut(s) 1653
BanI GGYRCC 1 cut(s) 749
BanII GRGCYC 1 cut(s) 821
BbsI GAAGAC 1 cut(s) 1410
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 7 cut(s) 598, 1144, 1287, 1417, 1551, 1566, 1696
BccI CCATC 3 cut(s) 251, 459, 1077
BcgI CGANNNNNNTGC 2 cut(s) 1342, 1376
BciT130I CCWGG 4 cut(s) 822, 1672, 1677, 1714
BciVI GTATCC 1 cut(s) 964
BclI TGATCA 2 cut(s) 199, 1435
BcoDI GTCTC 3 cut(s) 297, 969, 1269
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 2 cut(s) 318, 344
BfmI CTRYAG 1 cut(s) 759
BfuI GTATCC 1 cut(s) 964
BisI GCNGC 8 cut(s) 587, 1158, 1179, 1301, 1406, 1540, 1555, 1710
BlsI GCNGC 8 cut(s) 588, 1159, 1180, 1302, 1407, 1541, 1556, 1711
Bme1390I CCNGG 4 cut(s) 822, 1672, 1677, 1714
Bme18I GGWCC 1 cut(s) 375
BmgT120I GGNCC 2 cut(s) 375, 923
BmiI GGNNCC 5 cut(s) 376, 377, 675, 751, 1655
BmrFI CCNGG 4 cut(s) 822, 1672, 1677, 1714
BmrI ACTGGG 1 cut(s) 679
BmsI GCATC 4 cut(s) 231, 1049, 1392, 1711
BmuI ACTGGG 1 cut(s) 679
BpiI GAAGAC 1 cut(s) 1410
BplI GAGNNNNNCTC 2 cut(s) 976, 1008
BpmI CTGGAG 1 cut(s) 1293
Bpu10I CCTNAGC 1 cut(s) 1161
BpuEI CTTGAG 5 cut(s) 288, 1015, 1528, 1555, 1603
BsaBI GATNNNNATC 1 cut(s) 1239
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 4 cut(s) 369, 820, 900, 1129
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 632
Bse1I ACTGG 4 cut(s) 47, 220, 674, 850
Bse3DI GCAATG 2 cut(s) 1173, 1345
Bse8I GATNNNNATC 1 cut(s) 1239
BseBI CCWGG 4 cut(s) 822, 1672, 1677, 1714
BseDI CCNNGG 4 cut(s) 369, 820, 900, 1129
BseGI GGATG 3 cut(s) 85, 88, 298
BseJI GATNNNNATC 1 cut(s) 1239
BseLI CCNNNNNNNGG 2 cut(s) 631, 632
BseMI GCAATG 2 cut(s) 1173, 1345
BseMII CTCAG 4 cut(s) 134, 702, 1007, 1152
BseNI ACTGG 4 cut(s) 47, 220, 674, 850
BseRI GAGGAG 2 cut(s) 1017, 1068
BseXI GCAGC 7 cut(s) 598, 1144, 1287, 1417, 1551, 1566, 1696
BseYI CCCAGC 3 cut(s) 1109, 1422, 1657
BshFI GGCC 4 cut(s) 546, 925, 1181, 1675
BshNI GGYRCC 1 cut(s) 749
BslFI GGGAC 4 cut(s) 388, 496, 1147, 1504
BslI CCNNNNNNNGG 2 cut(s) 631, 632
BsmAI GTCTC 3 cut(s) 297, 969, 1269
BsmFI GGGAC 4 cut(s) 388, 496, 1147, 1504
BsmI GAATGC 2 cut(s) 1207, 1596
BsnI GGCC 4 cut(s) 546, 925, 1181, 1675
Bso31I GGTCTC 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 821
Bsp1407I TGTACA 1 cut(s) 1047
Bsp143I GATC 8 cut(s) 199, 208, 574, 1120, 1240, 1435, 1459, 1653
Bsp19I CCATGG 2 cut(s) 369, 900
BspACI CCGC 2 cut(s) 1178, 1479
BspANI GGCC 4 cut(s) 546, 925, 1181, 1675
BspCNI CTCAG 4 cut(s) 133, 701, 1006, 1153
BspLI GGNNCC 5 cut(s) 376, 377, 675, 751, 1655
BspMAI CTGCAG 1 cut(s) 763
BspPI GGATC 5 cut(s) 582, 1128, 1248, 1648, 1661
BspT107I GGYRCC 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 2 cut(s) 1173, 1345
BsrGI TGTACA 1 cut(s) 1047
BsrI ACTGG 4 cut(s) 47, 220, 674, 850
BssECI CCNNGG 4 cut(s) 369, 820, 900, 1129
BssMI GATC 8 cut(s) 199, 208, 574, 1120, 1240, 1435, 1459, 1653
BssT1I CCWWGG 3 cut(s) 369, 900, 1129
Bst2UI CCWGG 4 cut(s) 822, 1672, 1677, 1714
Bst4CI ACNGT 4 cut(s) 32, 798, 1360, 1642
Bst6I CTCTTC 2 cut(s) 133, 1522
BstAUI TGTACA 1 cut(s) 1047
BstC8I GCNNGC 3 cut(s) 591, 1089, 1255
BstDEI CTNAG 7 cut(s) 120, 413, 418, 688, 993, 1161, 1608
BstDSI CCRYGG 2 cut(s) 369, 900
BstF5I GGATG 3 cut(s) 85, 88, 298
BstKTI GATC 8 cut(s) 202, 211, 577, 1123, 1243, 1438, 1462, 1656
BstMAI GTCTC 3 cut(s) 297, 969, 1269
BstMBI GATC 8 cut(s) 199, 208, 574, 1120, 1240, 1435, 1459, 1653
BstMWI GCNNNNNNNGC 5 cut(s) 241, 423, 758, 1163, 1539
BstNI CCWGG 4 cut(s) 822, 1672, 1677, 1714
BstNSI RCATGY 2 cut(s) 430, 1699
BstSCI CCNGG 4 cut(s) 820, 1670, 1675, 1712
BstSFI CTRYAG 1 cut(s) 759
BstV1I GCAGC 7 cut(s) 598, 1144, 1287, 1417, 1551, 1566, 1696
BstV2I GAAGAC 1 cut(s) 1410
BstX2I RGATCY 2 cut(s) 1120, 1653
BstYI RGATCY 2 cut(s) 1120, 1653
BsuI GTATCC 1 cut(s) 964
BsuRI GGCC 4 cut(s) 546, 925, 1181, 1675
BtgI CCRYGG 2 cut(s) 369, 900
BtsCI GGATG 3 cut(s) 85, 88, 298
BtsI GCAGTG 1 cut(s) 1027
BtsIMutI CAGTG 3 cut(s) 213, 803, 1027
Cac8I GCNNGC 3 cut(s) 591, 1089, 1255
Cfr13I GGNCC 2 cut(s) 375, 923
Csp6I GTAC 4 cut(s) 223, 1048, 1231, 1629
CviQI GTAC 4 cut(s) 223, 1048, 1231, 1629
DdeI CTNAG 7 cut(s) 120, 413, 418, 688, 993, 1161, 1608
DpnI GATC 8 cut(s) 201, 210, 576, 1122, 1242, 1437, 1461, 1655
DpnII GATC 8 cut(s) 199, 208, 574, 1120, 1240, 1435, 1459, 1653
EaeI YGGCCR 1 cut(s) 1179
Eam1104I CTCTTC 2 cut(s) 133, 1522
EarI CTCTTC 2 cut(s) 133, 1522
Eco130I CCWWGG 3 cut(s) 369, 900, 1129
Eco24I GRGCYC 1 cut(s) 821
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 81
EcoO109I RGGNCCY 2 cut(s) 375, 923
EcoRII CCWGG 4 cut(s) 820, 1670, 1675, 1712
EcoT14I CCWWGG 3 cut(s) 369, 900, 1129
EcoT38I GRGCYC 1 cut(s) 821
ErhI CCWWGG 3 cut(s) 369, 900, 1129
FaqI GGGAC 4 cut(s) 388, 496, 1147, 1504
FbaI TGATCA 2 cut(s) 199, 1435
Fnu4HI GCNGC 8 cut(s) 587, 1158, 1179, 1301, 1406, 1540, 1555, 1710
FokI GGATG 3 cut(s) 75, 92, 285
FriOI GRGCYC 1 cut(s) 821
Fsp4HI GCNGC 8 cut(s) 587, 1158, 1179, 1301, 1406, 1540, 1555, 1710
FspBI CTAG 2 cut(s) 318, 344
GluI GCNGC 8 cut(s) 587, 1158, 1179, 1301, 1406, 1540, 1555, 1710
GsaI CCCAGC 3 cut(s) 1113, 1426, 1661
GsuI CTGGAG 1 cut(s) 1293
HaeIII GGCC 4 cut(s) 546, 925, 1181, 1675
HindIII AAGCTT 2 cut(s) 415, 1531
HinfI GANTC 8 cut(s) 509, 755, 905, 1005, 1026, 1245, 1450, 1475
HphI GGTGA 6 cut(s) 98, 452, 752, 855, 1355, 1537
Hpy166II GTNNAC 2 cut(s) 851, 1346
Hpy188I TCNGA 5 cut(s) 100, 256, 582, 658, 1095
Hpy188III TCNNGA 2 cut(s) 968, 1545
Hpy8I GTNNAC 2 cut(s) 851, 1346
HpyAV CCTTC 5 cut(s) 105, 144, 1095, 1274, 1544
HpyCH4III ACNGT 4 cut(s) 32, 798, 1360, 1642
HpyCH4V TGCA 5 cut(s) 270, 365, 735, 761, 1405
HpyF10VI GCNNNNNNNGC 5 cut(s) 241, 423, 758, 1163, 1539
HpyF3I CTNAG 7 cut(s) 120, 413, 418, 688, 993, 1161, 1608
KflI GGGWCCC 1 cut(s) 375
Ksp22I TGATCA 2 cut(s) 199, 1435
Kzo9I GATC 8 cut(s) 199, 208, 574, 1120, 1240, 1435, 1459, 1653
LmnI GCTCC 2 cut(s) 715, 937
Lsp1109I GCAGC 7 cut(s) 598, 1144, 1287, 1417, 1551, 1566, 1696
LweI GCATC 4 cut(s) 231, 1049, 1392, 1711
MaeI CTAG 2 cut(s) 318, 344
MaeIII GTNAC 7 cut(s) 636, 740, 841, 1006, 1057, 1207, 1525
MalI GATC 8 cut(s) 201, 210, 576, 1122, 1242, 1437, 1461, 1655
MboI GATC 8 cut(s) 199, 208, 574, 1120, 1240, 1435, 1459, 1653
MboII GAAGA 8 cut(s) 120, 676, 900, 1092, 1410, 1484, 1509, 1606
MflI RGATCY 2 cut(s) 1120, 1653
MhlI GDGCHC 1 cut(s) 821
MluCI AATT 4 cut(s) 114, 682, 948, 1187
MlyI GAGTC 2 cut(s) 518, 1014
MmeI TCCRAC 3 cut(s) 27, 693, 1622
MseI TTAA 3 cut(s) 174, 642, 1368
MslI CAYNNNNRTG 4 cut(s) 74, 462, 1074, 1443
MspR9I CCNGG 4 cut(s) 822, 1672, 1677, 1714
Mva1269I GAATGC 2 cut(s) 1207, 1596
MvaI CCWGG 4 cut(s) 822, 1672, 1677, 1714
MwoI GCNNNNNNNGC 5 cut(s) 241, 423, 758, 1163, 1539
NcoI CCATGG 2 cut(s) 369, 900
NdeII GATC 8 cut(s) 199, 208, 574, 1120, 1240, 1435, 1459, 1653
NlaIV GGNNCC 5 cut(s) 376, 377, 675, 751, 1655
NmuCI GTSAC 6 cut(s) 636, 740, 1006, 1057, 1207, 1525
NspI RCATGY 2 cut(s) 430, 1699
PctI GAATGC 2 cut(s) 1207, 1596
PfeI GAWTC 6 cut(s) 755, 905, 1026, 1245, 1450, 1475
PkrI GCNGC 8 cut(s) 588, 1159, 1180, 1302, 1407, 1541, 1556, 1711
PleI GAGTC 2 cut(s) 517, 1013
PpsI GAGTC 2 cut(s) 517, 1013
PpuMI RGGWCCY 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 375
Psp6I CCWGG 4 cut(s) 820, 1670, 1675, 1712
PspFI CCCAGC 3 cut(s) 1109, 1422, 1657
PspGI CCWGG 4 cut(s) 820, 1670, 1675, 1712
PspN4I GGNNCC 5 cut(s) 376, 377, 675, 751, 1655
PspPI GGNCC 2 cut(s) 375, 923
PspPPI RGGWCCY 1 cut(s) 375
PsrI GAACNNNNNNTAC 2 cut(s) 313, 345
PstI CTGCAG 1 cut(s) 763
PsuI RGATCY 2 cut(s) 1120, 1653
RsaI GTAC 4 cut(s) 224, 1049, 1232, 1630
RsaNI GTAC 4 cut(s) 223, 1048, 1231, 1629
RseI CAYNNNNRTG 4 cut(s) 74, 462, 1074, 1443
SaqAI TTAA 3 cut(s) 174, 642, 1368
SatI GCNGC 8 cut(s) 587, 1158, 1179, 1301, 1406, 1540, 1555, 1710
Sau3AI GATC 8 cut(s) 199, 208, 574, 1120, 1240, 1435, 1459, 1653
Sau96I GGNCC 2 cut(s) 375, 923
SchI GAGTC 2 cut(s) 518, 1014
ScrFI CCNGG 4 cut(s) 822, 1672, 1677, 1714
SduI GDGCHC 1 cut(s) 821
SfaNI GCATC 4 cut(s) 231, 1049, 1392, 1711
SfcI CTRYAG 1 cut(s) 759
SinI GGWCC 1 cut(s) 375
SmiMI CAYNNNNRTG 4 cut(s) 74, 462, 1074, 1443
SmlI CTYRAG 5 cut(s) 303, 1030, 1534, 1543, 1618
SmoI CTYRAG 5 cut(s) 303, 1030, 1534, 1543, 1618
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 4 cut(s) 114, 682, 948, 1187
SsiI CCGC 2 cut(s) 1178, 1479
SspMI CTAG 2 cut(s) 318, 344
StyD4I CCNGG 4 cut(s) 820, 1670, 1675, 1712
StyI CCWWGG 3 cut(s) 369, 900, 1129
TaaI ACNGT 4 cut(s) 32, 798, 1360, 1642
TaqI TCGA 4 cut(s) 1192, 1243, 1306, 1465
TasI AATT 4 cut(s) 114, 682, 948, 1187
TatI WGTACW 2 cut(s) 222, 1047
TauI GCSGC 1 cut(s) 1181
TfiI GAWTC 6 cut(s) 755, 905, 1026, 1245, 1450, 1475
Tru1I TTAA 3 cut(s) 174, 642, 1368
Tru9I TTAA 3 cut(s) 174, 642, 1368
TscAI CASTG 3 cut(s) 220, 803, 1027
TseFI GTSAC 6 cut(s) 636, 740, 1006, 1057, 1207, 1525
TseI GCWGC 7 cut(s) 586, 1157, 1300, 1405, 1539, 1554, 1709
Tsp45I GTSAC 6 cut(s) 636, 740, 1006, 1057, 1207, 1525
TspDTI ATGAA 6 cut(s) 17, 86, 573, 677, 944, 1395
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 3 cut(s) 220, 803, 1027
VpaK11BI GGWCC 1 cut(s) 375
XapI RAATTY 3 cut(s) 114, 682, 1187
XceI RCATGY 2 cut(s) 430, 1699
XcmI CCANNNNNNNNNTGG 1 cut(s) 1337
XspI CTAG 2 cut(s) 318, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.