Rh6BG500600

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
70043699 .. 70046745
3047 bp
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UTR
Exon/CDS
Intron
Rh6BG500600.1

Sequence Viewer

Length: 1656 bp
ATGAAGCCCATACATGATCACAGTCATAACAACAATGGAAGCCATATTAACAATAACAACAACTGGTTGGGGTTTTCACTCTCAGCTCCCCACATGAAAATGGAGGTCACTTCTTCTTCTGACCCTCATCAACACTACAGTCATCAACAAGCTCAGGCCTCCTCTGCTTCAGCTCAGCTTCCAAGTAGCTTCTACAATCTGACCCCGCTCTGCTATGAAAATGGTGGGTTTCACTCTCCCTTGACTGTAATGCCACTCAAGTCAGATGGGTCTCTTTGCATCATGGAAGCTCTCACTCGCTCACAAGCCGAAGGAATGGTGCCGAACTCGTCCCCAAAACTTGAGGACTTTCTAGGAGGAGCAAGCATGGGAGCTCATGACTATGGAACCCATCAAAGAGAGGTGGCAATGGCTCTCAGCTTAGACAGCTTGTATTACAATGAAAATGCAGAGGCAGAGCAACAATACTACTCTGGAATCCCTTTCCCTGGAGCTTACCAAACTCAAATGGAGGAAGAGTCCTCTAAGCAAGCCCACATTGTGGGCTGTGATAGTCACCAAATGACCCAGAACTGGGTGACTAGGCAGTACTCTGCTGCTCATCATGCTTTCAATCAACAACACATGAGTAACAACAGCTTGGACAATGGAGGAGTTTCTGGGTCTGTTAATGGTGGAATGCAGTGTGGGGATTTACAGTCTCTTACTTTGTCCATGAGCCCTGGATCTCAGTCCAGCTGTGTCACAGCTCCAAGGCAGATCTCACCCACTGAAACAGAGAGTCTAGCCATGGAAACCAAGAAGAGAGGTTCTGGTAAAATTAGTCAAACAAAGCAGCCAGTGCACAGAAAGTCCATTGACACATTTGGGCAGAGAACTTCACAGTATAGAGGAGTCACAAGACATCACCAGCATGGGAGGTGGCAAGCTCGAATTGGCAGGGTTGCAGGAAACAAGGACCTTTATCTTGGTACATTTGGCACCCAAGAGGAAGCAGCCGAAGCTTATGACATAGCTGCAATCAAGTTCCGTGGGGTAAATGCGGTCACCAACTTTGACATTACCAGATATGATGTTGAGAAAATCATGGCCAGCAATACTTTGCTTGCTGGAGAATTCGCTAGGCGTAACAAGGAGGTTGAACCTAACAAACAAGTCATTGAGTACAACTCACCAGCACAGAACAATGTGGAAGCCAATACACCCGAAAATAGTCATGGGAATAGTTCAGATTGGAAAATGGCTTTGTACCAAGCTGCACAGCAACAACAAGCAACTGCTGCTACTTGTGTTCAAACACTTGATCAAAAATCAATGTCTTCAGGGAATTACAGAAGTCCTGCATCTTTCTTGCAAGACCTCATTCGCGTTGAATCAGTGAACTCTAGCCAGCAGTTGATGGATGAATCAGCTAAAGCCGGTGCTCATTTTTCAAATCCTTCGTCGCTGGTGACCAGTCTGAGCAGCTCCAGAGAAGATAGCCCTGACAAATCAGGCCCCACAATGCTGTTTGCAAAACCTCCAATGGCATCAAAGTTCATAAGTCCAAGTACTGCTGCTGCTGTTAGCTCTTGGTTCCCATCAGCTCAGTTGAGGCCTGCAGCTGCCATTTCCATGTCTCACTTGCCTCTATTTGCTGCTTGGAATGACACCTAG

Protein Analysis

551

Amino Acids

60.12

Weight (kDa)

6.28

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 295 - 345 3.8e-10 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 319, 980
AccB7I CCANNNNNTGG 1 cut(s) 541
AccBSI CCGCTC 1 cut(s) 208
AccII CGCG 1 cut(s) 1368
AciI CCGC 2 cut(s) 206, 1043
AclWI GGATC 1 cut(s) 733
AcoI YGGCCR 1 cut(s) 1089
AcsI RAATTY 1 cut(s) 1115
AcuI CTGAAG 2 cut(s) 153, 1305
AdeI CACNNNGTG 1 cut(s) 541
AfaI GTAC 5 cut(s) 590, 973, 1166, 1250, 1552
AfiI CCNNNNNNNGG 4 cut(s) 488, 541, 573, 574
AgsI TTSAA 5 cut(s) 613, 1142, 1295, 1373, 1434
AjnI CCWGG 2 cut(s) 487, 721
Alw21I GWGCWC 3 cut(s) 376, 846, 1426
Alw26I GTCTC 3 cut(s) 276, 705, 1623
Alw44I GTGCAC 1 cut(s) 842
AlwI GGATC 1 cut(s) 733
AoxI GGCC 4 cut(s) 156, 1089, 1495, 1595
ApaLI GTGCAC 1 cut(s) 842
ApoI RAATTY 1 cut(s) 1115
ArsI GACNNNNNNTTYG 2 cut(s) 1427, 1459
AspS9I GGNCC 2 cut(s) 958, 1496
AsuHPI GGTGA 7 cut(s) 548, 589, 756, 899, 1039, 1164, 1462
AvaII GGWCC 1 cut(s) 958
BaeGI GKGCMC 1 cut(s) 846
BalI TGGCCA 1 cut(s) 1091
BanI GGYRCC 2 cut(s) 319, 980
BanII GRGCYC 2 cut(s) 376, 722
BbsI GAAGAC 1 cut(s) 1311
Bbv12I GWGCWC 3 cut(s) 376, 846, 1426
BccI CCATC 4 cut(s) 260, 399, 1393, 1588
BciT130I CCWGG 2 cut(s) 489, 723
BclI TGATCA 2 cut(s) 16, 1303
BcoDI GTCTC 3 cut(s) 276, 705, 1623
BfaI CTAG 6 cut(s) 353, 582, 785, 1122, 1386, 1654
BfmI CTRYAG 2 cut(s) 136, 1599
BglII AGATCT 1 cut(s) 759
BlpI GCTNAGC 1 cut(s) 174
BmcAI AGTACT 2 cut(s) 590, 1552
Bme1390I CCNGG 2 cut(s) 489, 723
Bme18I GGWCC 1 cut(s) 958
BmgT120I GGNCC 2 cut(s) 958, 1496
BmiI GGNNCC 5 cut(s) 321, 388, 982, 1498, 1577
BmrFI CCNGG 2 cut(s) 489, 723
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 3 cut(s) 288, 1352, 1538
BmuI ACTGGG 1 cut(s) 583
BpiI GAAGAC 1 cut(s) 1311
BplI GAGNNNNNCTC 2 cut(s) 1154, 1186
BpmI CTGGAG 3 cut(s) 510, 1131, 1453
Bpu10I CCTNAGC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 242, 362
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 5 cut(s) 487, 721, 752, 789, 1030
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 4 cut(s) 488, 541, 573, 574
Bse118I RCCGGY 1 cut(s) 1418
Bse1I ACTGG 4 cut(s) 68, 578, 839, 1455
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 2 cut(s) 489, 723
BseDI CCNNGG 5 cut(s) 487, 721, 752, 789, 1030
BseGI GGATG 1 cut(s) 1408
BseLI CCNNNNNNNGG 4 cut(s) 488, 541, 573, 574
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 7 cut(s) 96, 167, 188, 430, 743, 1451, 1601
BseNI ACTGG 4 cut(s) 68, 578, 839, 1455
BseRI GAGGAG 4 cut(s) 151, 372, 666, 906
BseSI GKGCMC 1 cut(s) 846
BsgI GTGCAG 1 cut(s) 1242
Bsh1236I CGCG 1 cut(s) 1368
BshFI GGCC 4 cut(s) 158, 1091, 1497, 1597
BshNI GGYRCC 2 cut(s) 319, 980
BsiHKAI GWGCWC 3 cut(s) 376, 846, 1426
BsiSI CCGG 1 cut(s) 1419
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 4 cut(s) 488, 541, 573, 574
BsmAI GTCTC 3 cut(s) 276, 705, 1623
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 4 cut(s) 158, 1091, 1497, 1597
Bso31I GGTCTC 1 cut(s) 276
Bsp1286I GDGCHC 4 cut(s) 376, 722, 846, 1426
Bsp143I GATC 4 cut(s) 16, 725, 759, 1303
Bsp1720I GCTNAGC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 2 cut(s) 206, 1043
BspANI GGCC 4 cut(s) 158, 1091, 1497, 1597
BspCNI CTCAG 7 cut(s) 95, 166, 187, 429, 742, 1452, 1600
BspFNI CGCG 1 cut(s) 1368
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 5 cut(s) 321, 388, 982, 1498, 1577
BspMAI CTGCAG 1 cut(s) 1603
BspPI GGATC 1 cut(s) 733
BspT107I GGYRCC 2 cut(s) 319, 980
BspTNI GGTCTC 1 cut(s) 276
BsrBI CCGCTC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 1418
BsrI ACTGG 4 cut(s) 68, 578, 839, 1455
BssAI RCCGGY 1 cut(s) 1418
BssECI CCNNGG 5 cut(s) 487, 721, 752, 789, 1030
BssMI GATC 4 cut(s) 16, 725, 759, 1303
BssT1I CCWWGG 2 cut(s) 752, 789
Bst2UI CCWGG 2 cut(s) 489, 723
Bst4CI ACNGT 5 cut(s) 23, 140, 247, 699, 885
Bst6I CTCTTC 2 cut(s) 510, 797
BstAPI GCANNNNNTGC 2 cut(s) 841, 1280
BstC8I GCNNGC 7 cut(s) 364, 531, 927, 1093, 1107, 1391, 1599
BstDEI CTNAG 9 cut(s) 82, 153, 174, 416, 421, 525, 729, 1460, 1587
BstDSI CCRYGG 2 cut(s) 789, 1030
BstEII GGTNACC 2 cut(s) 1045, 1450
BstF5I GGATG 1 cut(s) 1408
BstFNI CGCG 1 cut(s) 1368
BstKTI GATC 4 cut(s) 19, 728, 762, 1306
BstMAI GTCTC 3 cut(s) 276, 705, 1623
BstMBI GATC 4 cut(s) 16, 725, 759, 1303
BstMWI GCNNNNNNNGC 6 cut(s) 164, 426, 605, 841, 1001, 1280
BstNI CCWGG 2 cut(s) 489, 723
BstPI GGTNACC 2 cut(s) 1045, 1450
BstSCI CCNGG 2 cut(s) 487, 721
BstSFI CTRYAG 2 cut(s) 136, 1599
BstSLI GKGCMC 1 cut(s) 846
BstUI CGCG 1 cut(s) 1368
BstV2I GAAGAC 1 cut(s) 1311
BstX2I RGATCY 2 cut(s) 725, 759
BstYI RGATCY 2 cut(s) 725, 759
BsuRI GGCC 4 cut(s) 158, 1091, 1497, 1597
BtgI CCRYGG 2 cut(s) 789, 1030
BtsCI GGATG 1 cut(s) 1408
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 4 cut(s) 689, 768, 846, 1383
Cac8I GCNNGC 7 cut(s) 364, 531, 927, 1093, 1107, 1391, 1599
CciI TCATGA 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 1418
Cfr13I GGNCC 2 cut(s) 958, 1496
Csp6I GTAC 5 cut(s) 589, 972, 1165, 1249, 1551
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviQI GTAC 5 cut(s) 589, 972, 1165, 1249, 1551
DdeI CTNAG 9 cut(s) 82, 153, 174, 416, 421, 525, 729, 1460, 1587
DpnI GATC 4 cut(s) 18, 727, 761, 1305
DpnII GATC 4 cut(s) 16, 725, 759, 1303
DraIII CACNNNGTG 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 1089
Eam1104I CTCTTC 2 cut(s) 510, 797
EarI CTCTTC 2 cut(s) 510, 797
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 752, 789
Eco147I AGGCCT 2 cut(s) 158, 1597
Eco24I GRGCYC 2 cut(s) 376, 722
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 958
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 153, 1305
Eco91I GGTNACC 2 cut(s) 1045, 1450
EcoICRI GAGCTC 1 cut(s) 374
EcoO109I RGGNCCY 2 cut(s) 958, 1496
EcoO65I GGTNACC 2 cut(s) 1045, 1450
EcoRI GAATTC 1 cut(s) 1115
EcoRII CCWGG 2 cut(s) 487, 721
EcoT14I CCWWGG 2 cut(s) 752, 789
EcoT38I GRGCYC 2 cut(s) 376, 722
ErhI CCWWGG 2 cut(s) 752, 789
FaqI GGGAC 1 cut(s) 316
FauI CCCGC 1 cut(s) 213
FbaI TGATCA 2 cut(s) 16, 1303
FokI GGATG 1 cut(s) 1415
FriOI GRGCYC 2 cut(s) 376, 722
FspBI CTAG 6 cut(s) 353, 582, 785, 1122, 1386, 1654
GsuI CTGGAG 3 cut(s) 510, 1131, 1453
HaeIII GGCC 4 cut(s) 158, 1091, 1497, 1597
HapII CCGG 1 cut(s) 1419
HindIII AAGCTT 1 cut(s) 1002
HinfI GANTC 6 cut(s) 477, 518, 781, 894, 1373, 1406
HpaII CCGG 1 cut(s) 1419
HphI GGTGA 7 cut(s) 548, 589, 756, 899, 1039, 1164, 1462
Hpy166II GTNNAC 2 cut(s) 844, 1381
Hpy188I TCNGA 5 cut(s) 121, 201, 265, 1231, 1461
Hpy188III TCNNGA 3 cut(s) 377, 474, 1470
Hpy8I GTNNAC 2 cut(s) 844, 1381
Hpy99I CGWCG 1 cut(s) 1447
HpyAV CCTTC 2 cut(s) 305, 1449
HpyCH4III ACNGT 5 cut(s) 23, 140, 247, 699, 885
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 426, 605, 841, 1001, 1280
HpyF3I CTNAG 9 cut(s) 82, 153, 174, 416, 421, 525, 729, 1460, 1587
Ksp22I TGATCA 2 cut(s) 16, 1303
Kzo9I GATC 4 cut(s) 16, 725, 759, 1303
LmnI GCTCC 6 cut(s) 91, 359, 371, 491, 754, 1472
LweI GCATC 3 cut(s) 288, 1352, 1538
MaeI CTAG 6 cut(s) 353, 582, 785, 1122, 1386, 1654
MaeIII GTNAC 9 cut(s) 106, 554, 577, 629, 742, 895, 1045, 1127, 1450
MalI GATC 4 cut(s) 18, 727, 761, 1305
MbiI CCGCTC 1 cut(s) 208
MboI GATC 4 cut(s) 16, 725, 759, 1303
MboII GAAGA 6 cut(s) 105, 108, 527, 814, 1311, 1487
MflI RGATCY 2 cut(s) 725, 759
MhlI GDGCHC 4 cut(s) 376, 722, 846, 1426
MlsI TGGCCA 1 cut(s) 1091
MluCI AATT 4 cut(s) 819, 933, 1115, 1327
MluNI TGGCCA 1 cut(s) 1091
MlyI GAGTC 3 cut(s) 527, 790, 903
Mox20I TGGCCA 1 cut(s) 1091
MscI TGGCCA 1 cut(s) 1091
MseI TTAA 2 cut(s) 48, 669
MslI CAYNNNNRTG 4 cut(s) 98, 381, 912, 1613
Msp20I TGGCCA 1 cut(s) 1091
MspA1I CMGCKG 2 cut(s) 738, 1604
MspI CCGG 1 cut(s) 1419
MspR9I CCNGG 2 cut(s) 489, 723
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 2 cut(s) 489, 723
MvnI CGCG 1 cut(s) 1368
MwoI GCNNNNNNNGC 6 cut(s) 164, 426, 605, 841, 1001, 1280
NcoI CCATGG 1 cut(s) 789
NdeII GATC 4 cut(s) 16, 725, 759, 1303
NlaIV GGNNCC 5 cut(s) 321, 388, 982, 1498, 1577
NmuCI GTSAC 7 cut(s) 106, 554, 577, 742, 895, 1045, 1450
PagI TCATGA 1 cut(s) 376
PceI AGGCCT 2 cut(s) 158, 1597
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 3 cut(s) 477, 1373, 1406
PflMI CCANNNNNTGG 1 cut(s) 541
PleI GAGTC 3 cut(s) 526, 789, 902
PpsI GAGTC 3 cut(s) 526, 789, 902
PpuMI RGGWCCY 1 cut(s) 958
Psp124BI GAGCTC 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 958
Psp6I CCWGG 2 cut(s) 487, 721
PspEI GGTNACC 2 cut(s) 1045, 1450
PspGI CCWGG 2 cut(s) 487, 721
PspN4I GGNNCC 5 cut(s) 321, 388, 982, 1498, 1577
PspPI GGNCC 2 cut(s) 958, 1496
PspPPI RGGWCCY 1 cut(s) 958
PstI CTGCAG 1 cut(s) 1603
PsuI RGATCY 2 cut(s) 725, 759
PvuII CAGCTG 2 cut(s) 738, 1604
RsaI GTAC 5 cut(s) 590, 973, 1166, 1250, 1552
RsaNI GTAC 5 cut(s) 589, 972, 1165, 1249, 1551
RseI CAYNNNNRTG 4 cut(s) 98, 381, 912, 1613
SacI GAGCTC 1 cut(s) 376
SaqAI TTAA 2 cut(s) 48, 669
Sau3AI GATC 4 cut(s) 16, 725, 759, 1303
Sau96I GGNCC 2 cut(s) 958, 1496
ScaI AGTACT 2 cut(s) 590, 1552
SchI GAGTC 3 cut(s) 527, 790, 903
ScrFI CCNGG 2 cut(s) 489, 723
SduI GDGCHC 4 cut(s) 376, 722, 846, 1426
SfaNI GCATC 3 cut(s) 288, 1352, 1538
SfcI CTRYAG 2 cut(s) 136, 1599
SinI GGWCC 1 cut(s) 958
SmiMI CAYNNNNRTG 4 cut(s) 98, 381, 912, 1613
SmlI CTYRAG 2 cut(s) 257, 341
SmoI CTYRAG 2 cut(s) 257, 341
Sse9I AATT 4 cut(s) 819, 933, 1115, 1327
SseBI AGGCCT 2 cut(s) 158, 1597
SsiI CCGC 2 cut(s) 206, 1043
SspMI CTAG 6 cut(s) 353, 582, 785, 1122, 1386, 1654
SstI GAGCTC 1 cut(s) 376
StuI AGGCCT 2 cut(s) 158, 1597
StyD4I CCNGG 2 cut(s) 487, 721
StyI CCWWGG 2 cut(s) 752, 789
TaaI ACNGT 5 cut(s) 23, 140, 247, 699, 885
TaqI TCGA 1 cut(s) 931
TasI AATT 4 cut(s) 819, 933, 1115, 1327
TatI WGTACW 3 cut(s) 588, 1164, 1550
TfiI GAWTC 3 cut(s) 477, 1373, 1406
Tru1I TTAA 2 cut(s) 48, 669
Tru9I TTAA 2 cut(s) 48, 669
TscAI CASTG 4 cut(s) 689, 775, 846, 1383
TseFI GTSAC 7 cut(s) 106, 554, 577, 742, 895, 1045, 1450
Tsp45I GTSAC 7 cut(s) 106, 554, 577, 742, 895, 1045, 1450
TspDTI ATGAA 6 cut(s) 17, 110, 231, 456, 1419, 1528
TspGWI ACGGA 1 cut(s) 1019
TspRI CASTG 4 cut(s) 689, 775, 846, 1383
Van91I CCANNNNNTGG 1 cut(s) 541
VneI GTGCAC 1 cut(s) 842
VpaK11BI GGWCC 1 cut(s) 958
XapI RAATTY 1 cut(s) 1115
XspI CTAG 6 cut(s) 353, 582, 785, 1122, 1386, 1654
ZrmI AGTACT 2 cut(s) 590, 1552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.