Rmu_sc0000294.1_g000022

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000294.1
Physical Location & Seq
Forward (+)
116233 .. 119296
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000294.1_g000022.1.cds

Sequence Viewer

Length: 1965 bp
atgaagcccataaatgatcacagtcataacaacaatggaagccatattaacaataacaacaactggttggggttttcactctcagctccccacatgaaaatggaggtcacttcttcttctgaccctcaccaacactacagtcatcaacaagctcaggcctcctctgctacagctcagcttccaagtagcttctacaatctgaccccactctgctatgaaaatggtggctttcactctcccttgactgtaatgccactcaagtcagatgggtctctttgcatcatggaagctctcactcgctcacaagctgaaggaatggtgccgaactcgtccccaaaacttgaggactttctaggaggagcaagcatgggagctcatgactatggaacccatcaaagggaggtggcaatggctctcagcttagacagcttgtattacaacgaaaatgcagaggcagagcaacaatactactctggaatccctttccctggagcttaccaaactcaaatggaggaagagtcctctaagcaagcccacattgtgggctctgatagtcaccaaatgacccagaactgggtgactaggcagtactctgctgctcatcatgctttgaatcaacaacacatgagtaacaacagcttggacaatggaggagtttctgggtctgttaatggtgcaatgcagtgtggggatttacagtctcttactttgtccatgagccctggatctcagtccagctgtgtcacagctccaaggcagatctcacccactgaaacagagtgtctagccatggaaaccaagaagagaggttctggtaaaattagtcaaacaaagcagccagtgcacagaaagtccattgacacatttgggcagagaacttcacagtatagaggagtcacaaggcatagatggaccggtagatatgaagctcatctatgggacaacagttgcaagaaggaggggcaaaccagaaaaggaaggcaagggggatatgatatggaagagaaagctgcaagggcatatgatcttgctgctcttaagtactggggctcttcaacccacataaacttcccattggatgattacacaacacaacttgaagaaatgaagaatatgaaccggcaagagtatgttgcgcatctgaggaggaaaagcagtggattttcaaggggagcttcaatttaccgaggagttacaagacatcaccagcatgggaggtggcaagctagaattggcagggttgcaggaaacaaggacctttatcttggtacatttggcacccaagaggaagcagccgaagcttatgacatagctgcaatcaagttccgtggggtaaatgcggtcaccaactttgacattaccagatatgatgttgagaaaatcatggccagcaatactttgcttgctggagaattcgctaggcgtaacaaggaggttgaacctaacaatcaagtcattgagtacaactcaccagcacagaacaatgtggaagccaatacacccgaaaatagtcatgggaatagttcagattggaaaatggctttgtaccaagctgcacagcaacaacaagcaactgctgctacttgtgttcaaacacttgatcaaaaatcattgtcttcagggaattacagaagtcctgcatctttctcaatggcattgcaagacctcattcgcgttgaatcagtgaactctagccagcagttgatggatgaatcagctaaagccggtgctcatttttcaaatccttcgtcgctggtgaccagtctgagcagctccagagaagatagccctgacaaatcaggccccacaatgctgtttgcaaaacctccaatggcatcaaagttcataagtccaagtactgctgctgctgctgttagctcttggttcccatcagctcagttgaggcctgcagctgccatttccatgtctcacttgcctctatttgctgcttggagcgacacctag

Protein Analysis

654

Amino Acids

71.99

Weight (kDa)

6.82

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1137
AccB1I GGYRCC 2 cut(s) 319, 1277
AccB7I CCANNNNNTGG 1 cut(s) 541
AccII CGCG 1 cut(s) 1674
AciI CCGC 1 cut(s) 1340
AclWI GGATC 1 cut(s) 733
AcoI YGGCCR 1 cut(s) 1386
AcsI RAATTY 1 cut(s) 1412
AcuI CTGAAG 2 cut(s) 330, 1602
AdeI CACNNNGTG 1 cut(s) 541
AfaI GTAC 6 cut(s) 590, 1043, 1270, 1463, 1547, 1858
AfiI CCNNNNNNNGG 6 cut(s) 396, 397, 488, 541, 573, 574
AflII CTTAAG 1 cut(s) 1037
AgeI ACCGGT 1 cut(s) 914
AgsI TTSAA 9 cut(s) 613, 1056, 1100, 1167, 1179, 1439, 1592, 1679, 1740
AjnI CCWGG 2 cut(s) 487, 721
Alw21I GWGCWC 3 cut(s) 376, 846, 1732
Alw26I GTCTC 3 cut(s) 276, 705, 1932
Alw44I GTGCAC 1 cut(s) 842
AlwI GGATC 1 cut(s) 733
AoxI GGCC 4 cut(s) 156, 1386, 1801, 1904
ApaLI GTGCAC 1 cut(s) 842
ApoI RAATTY 1 cut(s) 1412
ArsI GACNNNNNNTTYG 2 cut(s) 1733, 1765
AsiGI ACCGGT 1 cut(s) 914
AspLEI GCGC 1 cut(s) 1138
AspS9I GGNCC 3 cut(s) 912, 1255, 1802
AsuHPI GGTGA 8 cut(s) 119, 548, 589, 756, 1196, 1336, 1461, 1768
AvaII GGWCC 2 cut(s) 912, 1255
BaeGI GKGCMC 1 cut(s) 846
BalI TGGCCA 1 cut(s) 1388
BanI GGYRCC 2 cut(s) 319, 1277
BanII GRGCYC 4 cut(s) 376, 548, 722, 1052
BbsI GAAGAC 1 cut(s) 1608
Bbv12I GWGCWC 3 cut(s) 376, 846, 1732
BccI CCATC 5 cut(s) 260, 399, 903, 1699, 1897
BciT130I CCWGG 2 cut(s) 489, 723
BclI TGATCA 2 cut(s) 16, 1600
BcoDI GTCTC 3 cut(s) 276, 705, 1932
BfaI CTAG 7 cut(s) 353, 582, 785, 1227, 1419, 1692, 1963
BfmI CTRYAG 3 cut(s) 136, 168, 1908
BfrI CTTAAG 1 cut(s) 1037
BglII AGATCT 1 cut(s) 759
BlpI GCTNAGC 1 cut(s) 174
BmcAI AGTACT 3 cut(s) 590, 1043, 1858
Bme1390I CCNGG 2 cut(s) 489, 723
Bme18I GGWCC 2 cut(s) 912, 1255
BmgT120I GGNCC 3 cut(s) 912, 1255, 1802
BmiI GGNNCC 5 cut(s) 321, 388, 1279, 1804, 1886
BmrFI CCNGG 2 cut(s) 489, 723
BmrI ACTGGG 2 cut(s) 583, 1054
BmsI GCATC 4 cut(s) 288, 1147, 1649, 1844
BmuI ACTGGG 2 cut(s) 583, 1054
BpiI GAAGAC 1 cut(s) 1608
BplI GAGNNNNNCTC 2 cut(s) 1451, 1483
BpmI CTGGAG 3 cut(s) 510, 1428, 1759
Bpu10I CCTNAGC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 242, 362
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 6 cut(s) 487, 721, 752, 789, 1186, 1327
BsaWI WCCGGW 1 cut(s) 914
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 6 cut(s) 396, 397, 488, 541, 573, 574
Bse118I RCCGGY 3 cut(s) 914, 1119, 1724
Bse1I ACTGG 5 cut(s) 68, 578, 839, 1049, 1761
Bse3DI GCAATG 3 cut(s) 414, 684, 1655
BseBI CCWGG 2 cut(s) 489, 723
BseDI CCNNGG 6 cut(s) 487, 721, 752, 789, 1186, 1327
BseGI GGATG 2 cut(s) 1084, 1714
BseLI CCNNNNNNNGG 6 cut(s) 396, 397, 488, 541, 573, 574
BseMI GCAATG 3 cut(s) 414, 684, 1655
BseMII CTCAG 8 cut(s) 96, 167, 188, 430, 743, 1133, 1757, 1910
BseNI ACTGG 5 cut(s) 68, 578, 839, 1049, 1761
BseRI GAGGAG 6 cut(s) 151, 372, 666, 906, 1159, 1203
BseSI GKGCMC 1 cut(s) 846
BsgI GTGCAG 1 cut(s) 1539
Bsh1236I CGCG 1 cut(s) 1674
BshFI GGCC 4 cut(s) 158, 1388, 1803, 1906
BshNI GGYRCC 2 cut(s) 319, 1277
BshTI ACCGGT 1 cut(s) 914
BsiHKAI GWGCWC 3 cut(s) 376, 846, 1732
BsiSI CCGG 3 cut(s) 915, 1120, 1725
BslFI GGGAC 2 cut(s) 316, 953
BslI CCNNNNNNNGG 6 cut(s) 396, 397, 488, 541, 573, 574
BsmAI GTCTC 3 cut(s) 276, 705, 1932
BsmFI GGGAC 2 cut(s) 316, 953
BsnI GGCC 4 cut(s) 158, 1388, 1803, 1906
Bso31I GGTCTC 1 cut(s) 276
Bsp1286I GDGCHC 6 cut(s) 376, 548, 722, 846, 1052, 1732
Bsp143I GATC 5 cut(s) 16, 725, 759, 1024, 1600
Bsp1720I GCTNAGC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 1 cut(s) 1340
BspANI GGCC 4 cut(s) 158, 1388, 1803, 1906
BspCNI CTCAG 8 cut(s) 95, 166, 187, 429, 742, 1134, 1758, 1909
BspFNI CGCG 1 cut(s) 1674
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 5 cut(s) 321, 388, 1279, 1804, 1886
BspMAI CTGCAG 1 cut(s) 1912
BspPI GGATC 1 cut(s) 733
BspQI GCTCTTC 1 cut(s) 1057
BspT107I GGYRCC 2 cut(s) 319, 1277
BspTI CTTAAG 1 cut(s) 1037
BspTNI GGTCTC 1 cut(s) 276
BsrDI GCAATG 3 cut(s) 414, 684, 1655
BsrFI RCCGGY 3 cut(s) 914, 1119, 1724
BsrI ACTGG 5 cut(s) 68, 578, 839, 1049, 1761
BssAI RCCGGY 3 cut(s) 914, 1119, 1724
BssECI CCNNGG 6 cut(s) 487, 721, 752, 789, 1186, 1327
BssMI GATC 5 cut(s) 16, 725, 759, 1024, 1600
BssT1I CCWWGG 2 cut(s) 752, 789
Bst2UI CCWGG 2 cut(s) 489, 723
Bst4CI ACNGT 6 cut(s) 23, 140, 247, 699, 885, 947
Bst6I CTCTTC 4 cut(s) 510, 797, 996, 1057
BstAFI CTTAAG 1 cut(s) 1037
BstAPI GCANNNNNTGC 2 cut(s) 841, 1577
BstC8I GCNNGC 7 cut(s) 364, 531, 1224, 1390, 1404, 1697, 1908
BstDSI CCRYGG 2 cut(s) 789, 1327
BstEII GGTNACC 2 cut(s) 1342, 1756
BstF5I GGATG 2 cut(s) 1084, 1714
BstFNI CGCG 1 cut(s) 1674
BstHHI GCGC 1 cut(s) 1138
BstKTI GATC 5 cut(s) 19, 728, 762, 1027, 1603
BstMAI GTCTC 3 cut(s) 276, 705, 1932
BstMBI GATC 5 cut(s) 16, 725, 759, 1024, 1600
BstMWI GCNNNNNNNGC 8 cut(s) 164, 426, 605, 841, 1016, 1298, 1577, 1868
BstNI CCWGG 2 cut(s) 489, 723
BstPI GGTNACC 2 cut(s) 1342, 1756
BstSCI CCNGG 2 cut(s) 487, 721
BstSFI CTRYAG 3 cut(s) 136, 168, 1908
BstSLI GKGCMC 1 cut(s) 846
BstUI CGCG 1 cut(s) 1674
BstV2I GAAGAC 1 cut(s) 1608
BstX2I RGATCY 2 cut(s) 725, 759
BstYI RGATCY 2 cut(s) 725, 759
BsuRI GGCC 4 cut(s) 158, 1388, 1803, 1906
BtgI CCRYGG 2 cut(s) 789, 1327
BtsCI GGATG 2 cut(s) 1084, 1714
BtsI GCAGTG 2 cut(s) 689, 1162
BtsIMutI CAGTG 5 cut(s) 689, 768, 846, 1162, 1689
Cac8I GCNNGC 7 cut(s) 364, 531, 1224, 1390, 1404, 1697, 1908
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 1138
Cfr10I RCCGGY 3 cut(s) 914, 1119, 1724
Cfr13I GGNCC 3 cut(s) 912, 1255, 1802
Csp6I GTAC 6 cut(s) 589, 1042, 1269, 1462, 1546, 1857
CspAI ACCGGT 1 cut(s) 914
CspCI CAANNNNNGTGG 2 cut(s) 1309, 1344
CviQI GTAC 6 cut(s) 589, 1042, 1269, 1462, 1546, 1857
DpnI GATC 5 cut(s) 18, 727, 761, 1026, 1602
DpnII GATC 5 cut(s) 16, 725, 759, 1024, 1600
DraIII CACNNNGTG 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 1386
Eam1104I CTCTTC 4 cut(s) 510, 797, 996, 1057
EarI CTCTTC 4 cut(s) 510, 797, 996, 1057
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 752, 789
Eco147I AGGCCT 2 cut(s) 158, 1906
Eco24I GRGCYC 4 cut(s) 376, 548, 722, 1052
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 912, 1255
Eco53kI GAGCTC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 330, 1602
Eco91I GGTNACC 2 cut(s) 1342, 1756
EcoICRI GAGCTC 1 cut(s) 374
EcoO109I RGGNCCY 2 cut(s) 1255, 1802
EcoO65I GGTNACC 2 cut(s) 1342, 1756
EcoRI GAATTC 1 cut(s) 1412
EcoRII CCWGG 2 cut(s) 487, 721
EcoT14I CCWWGG 2 cut(s) 752, 789
EcoT38I GRGCYC 4 cut(s) 376, 548, 722, 1052
ErhI CCWWGG 2 cut(s) 752, 789
FalI AAGNNNNNCTT 2 cut(s) 1159, 1191
FaqI GGGAC 2 cut(s) 316, 953
FauNDI CATATG 1 cut(s) 1021
FbaI TGATCA 2 cut(s) 16, 1600
FokI GGATG 2 cut(s) 1091, 1721
FriOI GRGCYC 4 cut(s) 376, 548, 722, 1052
FspBI CTAG 7 cut(s) 353, 582, 785, 1227, 1419, 1692, 1963
FspI TGCGCA 1 cut(s) 1137
GlaI GCGC 1 cut(s) 1137
GsuI CTGGAG 3 cut(s) 510, 1428, 1759
HaeIII GGCC 4 cut(s) 158, 1388, 1803, 1906
HapII CCGG 3 cut(s) 915, 1120, 1725
HhaI GCGC 1 cut(s) 1138
Hin6I GCGC 1 cut(s) 1136
HinP1I GCGC 1 cut(s) 1136
HindIII AAGCTT 1 cut(s) 1299
HinfI GANTC 6 cut(s) 477, 518, 613, 894, 1679, 1712
HpaII CCGG 3 cut(s) 915, 1120, 1725
HphI GGTGA 8 cut(s) 119, 548, 589, 756, 1196, 1336, 1461, 1768
Hpy166II GTNNAC 2 cut(s) 844, 1687
Hpy188I TCNGA 7 cut(s) 121, 201, 265, 550, 1143, 1528, 1767
Hpy188III TCNNGA 3 cut(s) 377, 474, 1776
Hpy8I GTNNAC 2 cut(s) 844, 1687
Hpy99I CGWCG 1 cut(s) 1753
HpyAV CCTTC 4 cut(s) 305, 949, 972, 1755
HpyCH4III ACNGT 6 cut(s) 23, 140, 247, 699, 885, 947
HpyF10VI GCNNNNNNNGC 8 cut(s) 164, 426, 605, 841, 1016, 1298, 1577, 1868
HspAI GCGC 1 cut(s) 1136
Ksp22I TGATCA 2 cut(s) 16, 1600
Kzo9I GATC 5 cut(s) 16, 725, 759, 1024, 1600
LguI GCTCTTC 1 cut(s) 1057
LmnI GCTCC 8 cut(s) 91, 359, 371, 491, 754, 1172, 1778, 1953
LweI GCATC 4 cut(s) 288, 1147, 1649, 1844
MaeI CTAG 7 cut(s) 353, 582, 785, 1227, 1419, 1692, 1963
MalI GATC 5 cut(s) 18, 727, 761, 1026, 1602
MboI GATC 5 cut(s) 16, 725, 759, 1024, 1600
MflI RGATCY 2 cut(s) 725, 759
MhlI GDGCHC 6 cut(s) 376, 548, 722, 846, 1052, 1732
MlsI TGGCCA 1 cut(s) 1388
MluCI AATT 5 cut(s) 819, 1179, 1230, 1412, 1624
MluNI TGGCCA 1 cut(s) 1388
MlyI GAGTC 2 cut(s) 527, 903
Mox20I TGGCCA 1 cut(s) 1388
MscI TGGCCA 1 cut(s) 1388
MseI TTAA 3 cut(s) 48, 669, 1038
MslI CAYNNNNRTG 4 cut(s) 98, 381, 1209, 1922
Msp20I TGGCCA 1 cut(s) 1388
MspA1I CMGCKG 2 cut(s) 738, 1913
MspCI CTTAAG 1 cut(s) 1037
MspI CCGG 3 cut(s) 915, 1120, 1725
MspR9I CCNGG 2 cut(s) 489, 723
MvaI CCWGG 2 cut(s) 489, 723
MvnI CGCG 1 cut(s) 1674
MwoI GCNNNNNNNGC 8 cut(s) 164, 426, 605, 841, 1016, 1298, 1577, 1868
NcoI CCATGG 1 cut(s) 789
NdeI CATATG 1 cut(s) 1021
NdeII GATC 5 cut(s) 16, 725, 759, 1024, 1600
NlaIV GGNNCC 5 cut(s) 321, 388, 1279, 1804, 1886
NmuCI GTSAC 7 cut(s) 106, 554, 577, 742, 895, 1342, 1756
NsbI TGCGCA 1 cut(s) 1137
PagI TCATGA 1 cut(s) 376
PceI AGGCCT 2 cut(s) 158, 1906
PciSI GCTCTTC 1 cut(s) 1057
PfeI GAWTC 4 cut(s) 477, 613, 1679, 1712
PflMI CCANNNNNTGG 1 cut(s) 541
PinAI ACCGGT 1 cut(s) 914
PleI GAGTC 2 cut(s) 526, 902
PpsI GAGTC 2 cut(s) 526, 902
PpuMI RGGWCCY 1 cut(s) 1255
Psp124BI GAGCTC 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 1255
Psp6I CCWGG 2 cut(s) 487, 721
PspEI GGTNACC 2 cut(s) 1342, 1756
PspGI CCWGG 2 cut(s) 487, 721
PspN4I GGNNCC 5 cut(s) 321, 388, 1279, 1804, 1886
PspPI GGNCC 3 cut(s) 912, 1255, 1802
PspPPI RGGWCCY 1 cut(s) 1255
PstI CTGCAG 1 cut(s) 1912
PsuI RGATCY 2 cut(s) 725, 759
PvuII CAGCTG 2 cut(s) 738, 1913
RsaI GTAC 6 cut(s) 590, 1043, 1270, 1463, 1547, 1858
RsaNI GTAC 6 cut(s) 589, 1042, 1269, 1462, 1546, 1857
RseI CAYNNNNRTG 4 cut(s) 98, 381, 1209, 1922
SacI GAGCTC 1 cut(s) 376
SapI GCTCTTC 1 cut(s) 1057
SaqAI TTAA 3 cut(s) 48, 669, 1038
Sau3AI GATC 5 cut(s) 16, 725, 759, 1024, 1600
Sau96I GGNCC 3 cut(s) 912, 1255, 1802
ScaI AGTACT 3 cut(s) 590, 1043, 1858
SchI GAGTC 2 cut(s) 527, 903
ScrFI CCNGG 2 cut(s) 489, 723
SduI GDGCHC 6 cut(s) 376, 548, 722, 846, 1052, 1732
SfaNI GCATC 4 cut(s) 288, 1147, 1649, 1844
SfcI CTRYAG 3 cut(s) 136, 168, 1908
SinI GGWCC 2 cut(s) 912, 1255
SmiMI CAYNNNNRTG 4 cut(s) 98, 381, 1209, 1922
SmlI CTYRAG 3 cut(s) 257, 341, 1037
SmoI CTYRAG 3 cut(s) 257, 341, 1037
Sse9I AATT 5 cut(s) 819, 1179, 1230, 1412, 1624
SseBI AGGCCT 2 cut(s) 158, 1906
SsiI CCGC 1 cut(s) 1340
SspMI CTAG 7 cut(s) 353, 582, 785, 1227, 1419, 1692, 1963
SstI GAGCTC 1 cut(s) 376
StuI AGGCCT 2 cut(s) 158, 1906
StyD4I CCNGG 2 cut(s) 487, 721
StyI CCWWGG 2 cut(s) 752, 789
TaaI ACNGT 6 cut(s) 23, 140, 247, 699, 885, 947
TasI AATT 5 cut(s) 819, 1179, 1230, 1412, 1624
TatI WGTACW 4 cut(s) 588, 1041, 1461, 1856
TfiI GAWTC 4 cut(s) 477, 613, 1679, 1712
Tru1I TTAA 3 cut(s) 48, 669, 1038
Tru9I TTAA 3 cut(s) 48, 669, 1038
TscAI CASTG 5 cut(s) 689, 775, 846, 1162, 1689
TseFI GTSAC 7 cut(s) 106, 554, 577, 742, 895, 1342, 1756
Tsp45I GTSAC 7 cut(s) 106, 554, 577, 742, 895, 1342, 1756
TspDTI ATGAA 8 cut(s) 17, 110, 231, 939, 1121, 1130, 1725, 1834
TspGWI ACGGA 1 cut(s) 1316
TspRI CASTG 5 cut(s) 689, 775, 846, 1162, 1689
Van91I CCANNNNNTGG 1 cut(s) 541
Vha464I CTTAAG 1 cut(s) 1037
VneI GTGCAC 1 cut(s) 842
VpaK11BI GGWCC 2 cut(s) 912, 1255
XapI RAATTY 1 cut(s) 1412
XspI CTAG 7 cut(s) 353, 582, 785, 1227, 1419, 1692, 1963
ZrmI AGTACT 3 cut(s) 590, 1043, 1858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.