Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002252

Physical Location & Seq

Genomic Coordinates Reverse (-)

3756382 .. 3758953

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06140.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAAGTCCATGAATGATCATAACAATAACAACAATGGTAGCAGTAACAGTAACAATAACAACTGGTTTGGTTTTTCACTCTTACCCCACATGAAAATGGAGGATGCTTCTTCTTCTTCCTGCTCAGCTGCCCTTCCAAGCAACAACAGCAGCTTCTATAACCTCAGCAGCTCTGGGCTCTGCTGCTATGGAGTTGGAGATAATGGTAATTTTCAATACTCTCCTCTCTCTGTAATGCCTCTCAAATCAGATGGCTCTCTCTGCATCATGGAAGCTCTCGGAAGGTCACAAACAGAAGGAATAATGCCCAACACATCCCCAAAACTGGAGGACTTTCTAGGAGGAGCAGCTCATGATTATGTGAGTGAGGAGAGAGAAGCCATGGCTCTGAGCTTAGACAGCTACTACAATGCAGCGGCAGAGCAGCAGCAGCAGAATCATCACATTCCTGTCCATTCCAATTCCTACTACTCTGGAATCCCAATCCAAGGAATCTACCATAACCAGTTGGAGGAAGAACATTCTAAGAATACCCAAATGACTCAAATGCCAGAGGACTTGAAAACCTGCTGGGTTTCCAGGCAGTACTCTGCACACCCAGCTCTGGAGCACCACCACATGAACAATGTAACCATGGTTGTTGAGAATGGCGGTTCTGGGTCCGTTCATGGAGGCATGAACCGTGGCGATTTGCAGTCGCTGACACTGTCCATGAGCCCTGGATCACAGACAAGCTGTGTGACAGCTCCAAAGCAGATCTCTCCCACTCAGACAGAATGTGCAGTGGCAGCCATTGAAACAAAGAAGAGGGGCTGCGGAAAGCTTGGCCAGAAGCAGCCTGTTCACAGGAAGTCCATTGACACATTTGGGCAGAGAACCTCACAGTTTAGAGGTGTCACAAGGCATAGATGGACTGGAAGATACGAGGCACATCTGTGGGACAACAGCTGTAAGAAGGAAGGGCAAACCAGAAAAGGAAGGCAAGTTTATCTTGGAGGTTATGATATGGAGGAGAAAGCTGCTAGAGCATATGATCTTGCTGCTCTTAAGTACTGGGGTTCTGCAACTCATATAAACTTTCCGCTGGACAATTACACTGCACAACTTGAAGAGATGAAGAATATGAGCCGGCAGGAATATGTTGCGCATCTGAGAAGGAAAAGCAACATCACCAGCATGGGAGATGGCAAGCTAGGATTGGCAGGGTTGCTGGAAACAAGGATCTTTATCTTGGAACTTTTGGCACCCAAGAGGAAGCTGCAGAAGCTTATGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010492 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098727 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

426

Amino Acids

47.22

Weight (kDa)

8.02

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37750
fragaria_vesca	FvH4_1g18270 FvH4_1g18270 FvH4_2g32640 FvH4_2g32640
malus_domestica	MD02G1190000.v1.1 MD08G1077100.v1.1 MD15G1064600.v1.1 MD15G1301100.v1.1
prunus_persica	Prupe.1G418600_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1
pyrus_communis	pycom02g15390 pycom02g15400 pycom08g06410 pycom15g06140 pycom15g26370
rosa_chinensis	RchiOBHm_Chr2g0108831 RchiOBHm_Chr6g0310091
rosa_laevigata	RLG00000010512 RLG00000017692
rosa_multiflora	Rmu_sc0000294.1_g000022 Rmu_sc0003973.1_g000013
rosa_roxburghii	Rroxscaffold_2G00134780 Rroxscaffold_7G00158880
rosa_rugosa	Rorug02G0156300 Rorug02G0156400 Rorug06G0377300 Rorug06G0377300
rosa_samantha	Rh2AG206600 Rh2AG206700 Rh2BG217800 Rh2CG209800 Rh2DG213000 Rh6AG491300 Rh6BG500600 Rh6CG505500 Rh6CG505600 Rh6DG491500 Rh6DG491600
rosa_wichuraiana	Rw2G016430 Rw6G042740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1146
Acc36I	ACCTGC	1 cut(s)	575
AccB1I	GGYRCC	1 cut(s)	1243
AciI	CCGC	4 cut(s)	416, 651, 816, 1082
AclWI	GGATC	2 cut(s)	730, 1229
AcoI	YGGCCR	1 cut(s)	826
AfaI	GTAC	2 cut(s)	587, 1052
AfiI	CCNNNNNNNGG	4 cut(s)	325, 488, 511, 604
AflII	CTTAAG	1 cut(s)	1046
AgsI	TTSAA	4 cut(s)	215, 562, 797, 1109
AjnI	CCWGG	2 cut(s)	578, 718
AleI	CACNNNNGTG	1 cut(s)	934
Alw21I	GWGCWC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	730, 1229
AlwNI	CAGNNNCTG	1 cut(s)	700
AoxI	GGCC	1 cut(s)	826
AspLEI	GCGC	1 cut(s)	1147
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	1 cut(s)	1162
AvaII	GGWCC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	828
BanI	GGYRCC	1 cut(s)	1243
BanII	GRGCYC	2 cut(s)	180, 719
Bbv12I	GWGCWC	1 cut(s)	612
BbvCI	CCTCAGC	1 cut(s)	164
BccI	CCATC	3 cut(s)	245, 903, 1178
BciT130I	CCWGG	2 cut(s)	580, 720
BclI	TGATCA	1 cut(s)	16
BfaI	CTAG	3 cut(s)	338, 1023, 1193
BfmI	CTRYAG	1 cut(s)	1259
BfrI	CTTAAG	1 cut(s)	1046
BfuAI	ACCTGC	1 cut(s)	575
BglII	AGATCT	1 cut(s)	756
BlpI	GCTNAGC	1 cut(s)	124
BmcAI	AGTACT	2 cut(s)	587, 1052
Bme1390I	CCNGG	2 cut(s)	580, 720
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	2 cut(s)	661, 1245
BmrFI	CCNGG	2 cut(s)	580, 720
BmrI	ACTGGG	1 cut(s)	1063
BmsI	GCATC	3 cut(s)	94, 273, 1156
BmuI	ACTGGG	1 cut(s)	1063
BpmI	CTGGAG	2 cut(s)	347, 626
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	1226
BsaJI	CCNNGG	5 cut(s)	381, 487, 633, 682, 718
Bsc4I	CCNNNNNNNGG	4 cut(s)	325, 488, 511, 604
Bse118I	RCCGGY	1 cut(s)	1128
Bse1I	ACTGG	5 cut(s)	68, 330, 505, 919, 1058
Bse8I	GATNNNNATC	1 cut(s)	1226
BseBI	CCWGG	2 cut(s)	580, 720
BseDI	CCNNGG	5 cut(s)	381, 487, 633, 682, 718
BseGI	GGATG	2 cut(s)	109, 314
BseJI	GATNNNNATC	1 cut(s)	1226
BseLI	CCNNNNNNNGG	4 cut(s)	325, 488, 511, 604
BseMII	CTCAG	5 cut(s)	138, 178, 380, 782, 1142
BseNI	ACTGG	5 cut(s)	68, 330, 505, 919, 1058
BseRI	GAGGAG	4 cut(s)	213, 357, 383, 1025
BseYI	CCCAGC	2 cut(s)	570, 598
BsgI	GTGCAG	3 cut(s)	576, 801, 1083
BshFI	GGCC	1 cut(s)	828
BshNI	GGYRCC	1 cut(s)	1243
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	1 cut(s)	1129
BslFI	GGGAC	1 cut(s)	953
BslI	CCNNNNNNNGG	4 cut(s)	325, 488, 511, 604
BsmFI	GGGAC	1 cut(s)	953
BsnI	GGCC	1 cut(s)	828
Bsp1286I	GDGCHC	3 cut(s)	180, 612, 719
Bsp143I	GATC	5 cut(s)	16, 722, 756, 1033, 1221
Bsp1720I	GCTNAGC	1 cut(s)	124
Bsp19I	CCATGG	2 cut(s)	381, 633
BspACI	CCGC	4 cut(s)	416, 651, 816, 1082
BspANI	GGCC	1 cut(s)	828
BspCNI	CTCAG	5 cut(s)	137, 177, 381, 781, 1143
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	661, 1245
BspMAI	CTGCAG	1 cut(s)	1263
BspMI	ACCTGC	1 cut(s)	575
BspPI	GGATC	2 cut(s)	730, 1229
BspT107I	GGYRCC	1 cut(s)	1243
BspTI	CTTAAG	1 cut(s)	1046
BsrFI	RCCGGY	1 cut(s)	1128
BsrI	ACTGG	5 cut(s)	68, 330, 505, 919, 1058
BssAI	RCCGGY	1 cut(s)	1128
BssECI	CCNNGG	5 cut(s)	381, 487, 633, 682, 718
BssMI	GATC	5 cut(s)	16, 722, 756, 1033, 1221
BssT1I	CCWWGG	3 cut(s)	381, 487, 633
Bst2UI	CCWGG	2 cut(s)	580, 720
Bst4CI	ACNGT	4 cut(s)	50, 683, 708, 885
Bst6I	CTCTTC	2 cut(s)	800, 1104
BstAFI	CTTAAG	1 cut(s)	1046
BstC8I	GCNNGC	2 cut(s)	1130, 1190
BstDEI	CTNAG	7 cut(s)	124, 164, 389, 394, 525, 768, 1151
BstDSI	CCRYGG	3 cut(s)	381, 633, 682
BstF5I	GGATG	2 cut(s)	109, 314
BstHHI	GCGC	1 cut(s)	1147
BstKTI	GATC	5 cut(s)	19, 725, 759, 1036, 1224
BstMBI	GATC	5 cut(s)	16, 722, 756, 1033, 1221
BstMWI	GCNNNNNNNGC	8 cut(s)	147, 261, 399, 430, 599, 788, 1025, 1264
BstNI	CCWGG	2 cut(s)	580, 720
BstSCI	CCNGG	2 cut(s)	578, 718
BstSFI	CTRYAG	1 cut(s)	1259
BstX2I	RGATCY	2 cut(s)	756, 1221
BstYI	RGATCY	2 cut(s)	756, 1221
BsuRI	GGCC	1 cut(s)	828
BtgI	CCRYGG	3 cut(s)	381, 633, 682
BtsCI	GGATG	2 cut(s)	109, 314
BtsI	GCAGTG	2 cut(s)	789, 1095
BtsIMutI	CAGTG	3 cut(s)	704, 789, 1095
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	2 cut(s)	1130, 1190
CaiI	CAGNNNCTG	1 cut(s)	700
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	1 cut(s)	1147
Cfr10I	RCCGGY	1 cut(s)	1128
Cfr13I	GGNCC	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	586, 1051
CviQI	GTAC	2 cut(s)	586, 1051
DdeI	CTNAG	7 cut(s)	124, 164, 389, 394, 525, 768, 1151
DpnI	GATC	5 cut(s)	18, 724, 758, 1035, 1223
DpnII	GATC	5 cut(s)	16, 722, 756, 1033, 1221
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	2 cut(s)	800, 1104
EarI	CTCTTC	2 cut(s)	800, 1104
Eco130I	CCWWGG	3 cut(s)	381, 487, 633
Eco24I	GRGCYC	2 cut(s)	180, 719
Eco47I	GGWCC	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	578, 718
EcoT14I	CCWWGG	3 cut(s)	381, 487, 633
EcoT38I	GRGCYC	2 cut(s)	180, 719
ErhI	CCWWGG	3 cut(s)	381, 487, 633
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FaqI	GGGAC	1 cut(s)	953
FauNDI	CATATG	1 cut(s)	1030
FbaI	TGATCA	1 cut(s)	16
FokI	GGATG	2 cut(s)	116, 301
FriOI	GRGCYC	2 cut(s)	180, 719
FspBI	CTAG	3 cut(s)	338, 1023, 1193
FspI	TGCGCA	1 cut(s)	1146
GlaI	GCGC	1 cut(s)	1146
GsaI	CCCAGC	2 cut(s)	574, 602
GsuI	CTGGAG	2 cut(s)	347, 626
HaeIII	GGCC	1 cut(s)	828
HapII	CCGG	1 cut(s)	1129
HhaI	GCGC	1 cut(s)	1147
Hin6I	GCGC	1 cut(s)	1145
HinP1I	GCGC	1 cut(s)	1145
HindIII	AAGCTT	2 cut(s)	821, 1265
HinfI	GANTC	4 cut(s)	436, 477, 492, 541
HpaII	CCGG	1 cut(s)	1129
HphI	GGTGA	1 cut(s)	1162
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188I	TCNGA	5 cut(s)	250, 281, 390, 771, 1152
Hpy188III	TCNNGA	3 cut(s)	353, 474, 605
Hpy8I	GTNNAC	1 cut(s)	844
HpyAV	CCTTC	7 cut(s)	143, 276, 290, 949, 953, 972, 1149
HpyCH4III	ACNGT	4 cut(s)	50, 683, 708, 885
HpyCH4V	TGCA	8 cut(s)	264, 413, 593, 694, 782, 1064, 1100, 1261
HpyF10VI	GCNNNNNNNGC	8 cut(s)	147, 261, 399, 430, 599, 788, 1025, 1264
HpyF3I	CTNAG	7 cut(s)	124, 164, 389, 394, 525, 768, 1151
HspAI	GCGC	1 cut(s)	1145
KroI	GCCGGC	1 cut(s)	1128
KroNI	GCCGGC	1 cut(s)	1130
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	16, 722, 756, 1033, 1221
LmnI	GCTCC	3 cut(s)	344, 607, 751
LweI	GCATC	3 cut(s)	94, 273, 1156
MaeI	CTAG	3 cut(s)	338, 1023, 1193
MaeIII	GTNAC	6 cut(s)	44, 50, 285, 628, 739, 895
MalI	GATC	5 cut(s)	18, 724, 758, 1035, 1223
MboI	GATC	5 cut(s)	16, 722, 756, 1033, 1221
MboII	GAAGA	8 cut(s)	102, 105, 108, 527, 817, 930, 1121, 1129
MflI	RGATCY	2 cut(s)	756, 1221
MhlI	GDGCHC	3 cut(s)	180, 612, 719
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	3 cut(s)	208, 460, 1090
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	2 cut(s)	175, 489
Mox20I	TGGCCA	1 cut(s)	828
MroNI	GCCGGC	1 cut(s)	1128
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	1 cut(s)	1047
MslI	CAYNNNNRTG	4 cut(s)	95, 357, 934, 1175
Msp20I	TGGCCA	1 cut(s)	828
MspA1I	CMGCKG	4 cut(s)	128, 416, 948, 1084
MspCI	CTTAAG	1 cut(s)	1046
MspI	CCGG	1 cut(s)	1129
MspR9I	CCNGG	2 cut(s)	580, 720
MvaI	CCWGG	2 cut(s)	580, 720
MwoI	GCNNNNNNNGC	8 cut(s)	147, 261, 399, 430, 599, 788, 1025, 1264
NaeI	GCCGGC	1 cut(s)	1130
NcoI	CCATGG	2 cut(s)	381, 633
NdeI	CATATG	1 cut(s)	1030
NdeII	GATC	5 cut(s)	16, 722, 756, 1033, 1221
NgoMIV	GCCGGC	1 cut(s)	1128
NlaIV	GGNNCC	2 cut(s)	661, 1245
NmuCI	GTSAC	3 cut(s)	285, 739, 895
NsbI	TGCGCA	1 cut(s)	1146
OliI	CACNNNNGTG	1 cut(s)	934
PagI	TCATGA	1 cut(s)	352
PdiI	GCCGGC	1 cut(s)	1130
PfeI	GAWTC	3 cut(s)	436, 477, 492
PflFI	GACNNNGTC	1 cut(s)	706
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	578, 718
PspFI	CCCAGC	2 cut(s)	570, 598
PspGI	CCWGG	2 cut(s)	578, 718
PspN4I	GGNNCC	2 cut(s)	661, 1245
PspPI	GGNCC	1 cut(s)	660
PstI	CTGCAG	1 cut(s)	1263
PstNI	CAGNNNCTG	1 cut(s)	700
PsuI	RGATCY	2 cut(s)	756, 1221
PsyI	GACNNNGTC	1 cut(s)	706
PvuII	CAGCTG	2 cut(s)	128, 948
RsaI	GTAC	2 cut(s)	587, 1052
RsaNI	GTAC	2 cut(s)	586, 1051
RseI	CAYNNNNRTG	4 cut(s)	95, 357, 934, 1175
SaqAI	TTAA	1 cut(s)	1047
Sau3AI	GATC	5 cut(s)	16, 722, 756, 1033, 1221
Sau96I	GGNCC	1 cut(s)	660
ScaI	AGTACT	2 cut(s)	587, 1052
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	580, 720
SduI	GDGCHC	3 cut(s)	180, 612, 719
SfaNI	GCATC	3 cut(s)	94, 273, 1156
SfcI	CTRYAG	1 cut(s)	1259
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	4 cut(s)	95, 357, 934, 1175
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
Sse9I	AATT	3 cut(s)	208, 460, 1090
SsiI	CCGC	4 cut(s)	416, 651, 816, 1082
SspMI	CTAG	3 cut(s)	338, 1023, 1193
StyD4I	CCNGG	2 cut(s)	578, 718
StyI	CCWWGG	3 cut(s)	381, 487, 633
TaaI	ACNGT	4 cut(s)	50, 683, 708, 885
TasI	AATT	3 cut(s)	208, 460, 1090
TatI	WGTACW	2 cut(s)	585, 1050
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	3 cut(s)	436, 477, 492
Tru1I	TTAA	1 cut(s)	1047
Tru9I	TTAA	1 cut(s)	1047
TscAI	CASTG	3 cut(s)	711, 789, 1102
TseFI	GTSAC	3 cut(s)	285, 739, 895
Tsp45I	GTSAC	3 cut(s)	285, 739, 895
TspDTI	ATGAA	7 cut(s)	17, 26, 107, 635, 656, 692, 1130
TspGWI	ACGGA	1 cut(s)	652
TspRI	CASTG	3 cut(s)	711, 789, 1102
Tth111I	GACNNNGTC	1 cut(s)	706
Vha464I	CTTAAG	1 cut(s)	1046
VpaK11BI	GGWCC	1 cut(s)	660
XspI	CTAG	3 cut(s)	338, 1023, 1193
ZrmI	AGTACT	2 cut(s)	587, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.